RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux z13-012 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:39 UTC 2017 s390x Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Dec 17:07:02 ntpdate[12009]: adjust time server 10.211.37.1 offset -0.000445 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 /home/buildd/filecache-default/c63540de4962374dad549ddd7685c5c502845718 Creating target for build PACKAGEBUILD-13828740 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 Starting target for build PACKAGEBUILD-13828740 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13828740 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 Updating target for build PACKAGEBUILD-13828740 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x Packages [941 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [518 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe s390x Packages [8005 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4897 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x Packages [52.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [26.5 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x Packages [145 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [94.3 kB] Fetched 15.1 MB in 3s (3981 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 96 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 51.5 MB of archives. After this operation, 686 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main s390x base-files s390x 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x bsdutils s390x 1:2.30.2-0.1ubuntu1 [57.9 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x coreutils s390x 8.26-3ubuntu4 [1197 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x debianutils s390x 4.8.3 [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg s390x 1.19.0.4ubuntu1 [1122 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x libc6-dev s390x 2.26-0ubuntu2 [2022 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libc-dev-bin s390x 2.26-0ubuntu2 [62.8 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x linux-libc-dev s390x 4.14.0-11.13 [955 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libgomp1 s390x 7.2.0-17ubuntu1 [70.0 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libitm1 s390x 7.2.0-17ubuntu1 [26.9 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7-base s390x 7.2.0-17ubuntu1 [18.8 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc1 s390x 1:7.2.0-17ubuntu1 [25.2 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libatomic1 s390x 7.2.0-17ubuntu1 [8244 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x cpp-7 s390x 7.2.0-17ubuntu1 [5173 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libcc1-0 s390x 7.2.0-17ubuntu1 [37.7 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x g++-7 s390x 7.2.0-17ubuntu1 [5969 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7 s390x 7.2.0-17ubuntu1 [5842 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc-7-dev s390x 7.2.0-17ubuntu1 [279 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++-7-dev s390x 7.2.0-17ubuntu1 [1446 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++6 s390x 7.2.0-17ubuntu1 [398 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgmp10 s390x 2:6.1.2+dfsg-1.1 [225 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libbinutils s390x 2.29.1-10ubuntu1 [305 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x binutils s390x 2.29.1-10ubuntu1 [3352 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-common s390x 2.29.1-10ubuntu1 [190 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-s390x-linux-gnu s390x 2.29.1-10ubuntu1 [1696 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x libc6 s390x 2.26-0ubuntu2 [2342 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x e2fslibs s390x 1.43.7-1 [153 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x e2fsprogs s390x 1.43.7-1 [477 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x findutils s390x 4.6.0+git+20170828-2 [287 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libperl5.26 s390x 5.26.1-3 [3372 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x perl s390x 5.26.1-3 [201 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x perl-base s390x 5.26.1-3 [1310 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main s390x libuuid1 s390x 2.30.2-0.1ubuntu1 [14.9 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main s390x libblkid1 s390x 2.30.2-0.1ubuntu1 [112 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main s390x libsmartcols1 s390x 2.30.2-0.1ubuntu1 [74.9 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main s390x libfdisk1 s390x 2.30.2-0.1ubuntu1 [145 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre3 s390x 2:8.39-8 [154 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x libselinux1 s390x 2.7-2 [64.0 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main s390x libmount1 s390x 2.30.2-0.1ubuntu1 [122 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main s390x fdisk s390x 2.30.2-0.1ubuntu1 [100 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main s390x util-linux s390x 2.30.2-0.1ubuntu1 [845 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x base-passwd s390x 3.5.44 [46.2 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x libc-bin s390x 2.26-0ubuntu2 [540 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x sysvinit-utils s390x 2.88dsf-59.10ubuntu1 [18.2 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main s390x libudev1 s390x 235-3ubuntu2 [51.4 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x libapt-pkg5.0 s390x 1.6~alpha5 [724 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x debconf all 1.5.65 [124 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x adduser all 3.116ubuntu1 [163 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x libgpg-error0 s390x 1.27-5 [35.4 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libgcrypt20 s390x 1.8.1-4 [350 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x gpgv s390x 2.1.15-1ubuntu8 [171 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main s390x libseccomp2 s390x 2.3.1-2.1ubuntu3 [40.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x apt s390x 1.6~alpha5 [1111 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x libapparmor1 s390x 2.11.0-2ubuntu18 [27.8 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libcap2 s390x 1:2.25-1.2 [13.2 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x libip4tc0 s390x 1.6.1-2ubuntu2 [19.3 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x mount s390x 2.30.2-0.1ubuntu1 [106 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main s390x systemd s390x 235-3ubuntu2 [2569 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main s390x libsystemd0 s390x 235-3ubuntu2 [180 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x systemd-sysv s390x 235-3ubuntu2 [13.1 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x libcap-ng0 s390x 0.7.7-3.1 [10.7 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libcomerr2 s390x 1.43.7-1 [11.3 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage-common all 2.7-2 [6916 B] Get:65 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage1 s390x 2.7-2 [78.6 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main s390x libss2 s390x 1.43.7-1 [10.7 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main s390x libnettle6 s390x 3.3-2 [103 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libhogweed4 s390x 3.3-2 [134 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libp11-kit0 s390x 0.23.9-2 [188 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x libtasn1-6 s390x 4.12-3 [34.2 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x sensible-utils all 0.0.11 [14.8 kB] Get:73 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libassuan0 s390x 2.4.5-1 [31.9 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x pinentry-curses s390x 1.0.0-3 [33.3 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x libnpth0 s390x 1.5-3 [7512 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg s390x 2.1.15-1ubuntu8 [733 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg-agent s390x 2.1.15-1ubuntu8 [233 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x libsqlite3-0 s390x 3.21.0-1 [460 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu14 [771 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x multiarch-support s390x 2.26-0ubuntu2 [6832 B] Get:81 http://ftpmaster.internal/ubuntu bionic/main s390x openssl s390x 1.0.2g-1ubuntu14 [477 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main s390x tzdata all 2017c-1 [188 kB] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgssapi-krb5-2 s390x 1.15.2-2 [109 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5-3 s390x 1.15.2-2 [261 kB] Get:85 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5support0 s390x 1.15.2-2 [30.7 kB] Get:86 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libk5crypto3 s390x 1.15.2-2 [84.0 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu1 [9092 B] Get:88 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-0 s390x 2.0.4-1 [91.2 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x libpng16-16 s390x 1.6.34-1 [171 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/universe s390x apt-transport-https all 1.6~alpha5 [1692 B] Get:91 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main s390x libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main s390x build-essential s390x 12.4ubuntu1 [4754 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main s390x libpsl5 s390x 0.19.1-4 [40.9 kB] Get:95 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libcurl3-gnutls s390x 7.55.1-1ubuntu3 [177 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main s390x optipng s390x 0.7.6-1ubuntu1 [81.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.5 MB in 2s (17.6 MB/s) (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_s390x.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_s390x.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.3_s390x.deb ... Unpacking debianutils (4.8.3) over (4.8.2) ... Setting up debianutils (4.8.3) ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_s390x.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.26-0ubuntu2_s390x.deb ... Unpacking libc6-dev:s390x (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.26-0ubuntu2_s390x.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.14.0-11.13_s390x.deb ... Unpacking linux-libc-dev:s390x (4.14.0-11.13) over (4.13.0-11.12) ... Preparing to unpack .../3-libgomp1_7.2.0-17ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../4-libitm1_7.2.0-17ubuntu1_s390x.deb ... Unpacking libitm1:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../5-gcc-7-base_7.2.0-17ubuntu1_s390x.deb ... Unpacking gcc-7-base:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Setting up gcc-7-base:s390x (7.2.0-17ubuntu1) ... (Reading database ... 12444 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a7.2.0-17ubuntu1_s390x.deb ... Unpacking libgcc1:s390x (1:7.2.0-17ubuntu1) over (1:7.2.0-6ubuntu1) ... Setting up libgcc1:s390x (1:7.2.0-17ubuntu1) ... (Reading database ... 12444 files and directories currently installed.) Preparing to unpack .../0-libatomic1_7.2.0-17ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../1-cpp-7_7.2.0-17ubuntu1_s390x.deb ... Unpacking cpp-7 (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../2-libcc1-0_7.2.0-17ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../3-g++-7_7.2.0-17ubuntu1_s390x.deb ... Unpacking g++-7 (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../4-gcc-7_7.2.0-17ubuntu1_s390x.deb ... Unpacking gcc-7 (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../5-libgcc-7-dev_7.2.0-17ubuntu1_s390x.deb ... Unpacking libgcc-7-dev:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../6-libstdc++-7-dev_7.2.0-17ubuntu1_s390x.deb ... Unpacking libstdc++-7-dev:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../7-libstdc++6_7.2.0-17ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (7.2.0-17ubuntu1) over (7.2.0-6ubuntu1) ... Setting up libstdc++6:s390x (7.2.0-17ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-1.1_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-1.1) over (2:6.1.2+dfsg-1) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-1.1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libbinutils_2.29.1-10ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.29.1-10ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils_2.29.1-10ubuntu1_s390x.deb ... Unpacking binutils (2.29.1-10ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-common_2.29.1-10ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.29.1-10ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-s390x-linux-gnu_2.29.1-10ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.29.1-10ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../libc6_2.26-0ubuntu2_s390x.deb ... Unpacking libc6:s390x (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc6:s390x (2.26-0ubuntu2) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.7-1_s390x.deb ... Unpacking e2fslibs:s390x (1.43.7-1) over (1.43.5-1) ... Setting up e2fslibs:s390x (1.43.7-1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.7-1_s390x.deb ... Unpacking e2fsprogs (1.43.7-1) over (1.43.5-1) ... Setting up e2fsprogs (1.43.7-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20170828-2_s390x.deb ... Unpacking findutils (4.6.0+git+20170828-2) over (4.6.0+git+20170729-2) ... Setting up findutils (4.6.0+git+20170828-2) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../perl_5.26.1-3_s390x.deb ... Unpacking perl (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-modules-5.26_5.26.1-3_all.deb ... Unpacking perl-modules-5.26 (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../libperl5.26_5.26.1-3_s390x.deb ... Unpacking libperl5.26:s390x (5.26.1-3) over (5.26.0-8ubuntu1) ... Preparing to unpack .../perl-base_5.26.1-3_s390x.deb ... Unpacking perl-base (5.26.1-3) over (5.26.0-8ubuntu1) ... Setting up perl-base (5.26.1-3) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libuuid1_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking libuuid1:s390x (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libuuid1:s390x (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libblkid1_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking libblkid1:s390x (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libblkid1:s390x (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking libsmartcols1:s390x (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libsmartcols1:s390x (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking libfdisk1:s390x (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libfdisk1:s390x (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-8_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-8) over (2:8.39-4) ... Setting up libpcre3:s390x (2:8.39-8) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libselinux1_2.7-2_s390x.deb ... Unpacking libselinux1:s390x (2.7-2) over (2.7-1) ... Setting up libselinux1:s390x (2.7-2) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../libmount1_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking libmount1:s390x (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up libmount1:s390x (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../fdisk_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking fdisk (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up fdisk (2.30.2-0.1ubuntu1) ... (Reading database ... 12448 files and directories currently installed.) Preparing to unpack .../util-linux_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking util-linux (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Setting up util-linux (2.30.2-0.1ubuntu1) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.44_s390x.deb ... Unpacking base-passwd (3.5.44) over (3.5.43) ... Setting up base-passwd (3.5.44) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../libc-bin_2.26-0ubuntu2_s390x.deb ... Unpacking libc-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Setting up libc-bin (2.26-0ubuntu2) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.10ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.88dsf-59.10ubuntu1) over (2.88dsf-59.8git1) ... Setting up sysvinit-utils (2.88dsf-59.10ubuntu1) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../libudev1_235-3ubuntu2_s390x.deb ... Unpacking libudev1:s390x (235-3ubuntu2) over (234-2ubuntu10) ... Setting up libudev1:s390x (235-3ubuntu2) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.6~alpha5_s390x.deb ... Unpacking libapt-pkg5.0:s390x (1.6~alpha5) over (1.5~rc4) ... Setting up libapt-pkg5.0:s390x (1.6~alpha5) ... (Reading database ... 12449 files and directories currently installed.) Preparing to unpack .../debconf_1.5.65_all.deb ... Unpacking debconf (1.5.65) over (1.5.63) ... Setting up debconf (1.5.65) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../adduser_3.116ubuntu1_all.deb ... Unpacking adduser (3.116ubuntu1) over (3.113+nmu3ubuntu5) ... Setting up adduser (3.116ubuntu1) ... (Reading database ... 12441 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.27-5_s390x.deb ... Unpacking libgpg-error0:s390x (1.27-5) over (1.27-3) ... Setting up libgpg-error0:s390x (1.27-5) ... (Reading database ... 12441 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.1-4_s390x.deb ... Unpacking libgcrypt20:s390x (1.8.1-4) over (1.7.8-2ubuntu1) ... Setting up libgcrypt20:s390x (1.8.1-4) ... (Reading database ... 12441 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.15-1ubuntu8_s390x.deb ... Unpacking gpgv (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Setting up gpgv (2.1.15-1ubuntu8) ... (Reading database ... 12441 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu3_s390x.deb ... Unpacking libseccomp2:s390x (2.3.1-2.1ubuntu3) over (2.3.1-2.1ubuntu2) ... Setting up libseccomp2:s390x (2.3.1-2.1ubuntu3) ... (Reading database ... 12441 files and directories currently installed.) Preparing to unpack .../apt_1.6~alpha5_s390x.deb ... Unpacking apt (1.6~alpha5) over (1.5~rc4) ... Setting up apt (1.6~alpha5) ... (Reading database ... 12437 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.11.0-2ubuntu18_s390x.deb ... Unpacking libapparmor1:s390x (2.11.0-2ubuntu18) over (2.11.0-2ubuntu17) ... Preparing to unpack .../1-libcap2_1%3a2.25-1.2_s390x.deb ... Unpacking libcap2:s390x (1:2.25-1.2) over (1:2.25-1) ... Preparing to unpack .../2-libip4tc0_1.6.1-2ubuntu2_s390x.deb ... Unpacking libip4tc0:s390x (1.6.1-2ubuntu2) over (1.6.1-2ubuntu1) ... Preparing to unpack .../3-mount_2.30.2-0.1ubuntu1_s390x.deb ... Unpacking mount (2.30.2-0.1ubuntu1) over (2.30.1-0ubuntu4) ... Preparing to unpack .../4-systemd_235-3ubuntu2_s390x.deb ... Unpacking systemd (235-3ubuntu2) over (234-2ubuntu10) ... Preparing to unpack .../5-libsystemd0_235-3ubuntu2_s390x.deb ... Unpacking libsystemd0:s390x (235-3ubuntu2) over (234-2ubuntu10) ... Setting up libsystemd0:s390x (235-3ubuntu2) ... Setting up libapparmor1:s390x (2.11.0-2ubuntu18) ... Setting up libcap2:s390x (1:2.25-1.2) ... Setting up libip4tc0:s390x (1.6.1-2ubuntu2) ... Setting up mount (2.30.2-0.1ubuntu1) ... Setting up systemd (235-3ubuntu2) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/system.conf ... Removing empty /etc/rc.local Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. Removing user `systemd-bus-proxy' ... Warning: group `systemd-bus-proxy' has no more members. Done. (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../systemd-sysv_235-3ubuntu2_s390x.deb ... Unpacking systemd-sysv (235-3ubuntu2) over (234-2ubuntu10) ... Preparing to unpack .../libcap-ng0_0.7.7-3.1_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.7-3.1) over (0.7.7-3build1) ... Setting up libcap-ng0:s390x (0.7.7-3.1) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.7-1_s390x.deb ... Unpacking libcomerr2:s390x (1.43.7-1) over (1.43.5-1) ... Setting up libcomerr2:s390x (1.43.7-1) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.7-2_s390x.deb ... Unpacking libsemanage1:s390x (2.7-2) over (2.7-1) ... Setting up libsemanage1:s390x (2.7-2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libss2_1.43.7-1_s390x.deb ... Unpacking libss2:s390x (1.43.7-1) over (1.43.5-1) ... Setting up libss2:s390x (1.43.7-1) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libnettle6_3.3-2_s390x.deb ... Unpacking libnettle6:s390x (3.3-2) over (3.3-1) ... Setting up libnettle6:s390x (3.3-2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.3-2_s390x.deb ... Unpacking libhogweed4:s390x (3.3-2) over (3.3-1) ... Setting up libhogweed4:s390x (3.3-2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.9-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.9-2) over (0.23.7-3) ... Setting up libp11-kit0:s390x (0.23.9-2) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.12-3_s390x.deb ... Unpacking libtasn1-6:s390x (4.12-3) over (4.12-2.1) ... Setting up libtasn1-6:s390x (4.12-3) ... (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../00-lsb-base_9.20170808ubuntu1_all.deb ... Unpacking lsb-base (9.20170808ubuntu1) over (9.20160110ubuntu5) ... Preparing to unpack .../01-sensible-utils_0.0.11_all.deb ... Unpacking sensible-utils (0.0.11) over (0.0.10) ... Preparing to unpack .../02-libassuan0_2.4.5-1_s390x.deb ... Unpacking libassuan0:s390x (2.4.5-1) over (2.4.3-3) ... Preparing to unpack .../03-pinentry-curses_1.0.0-3_s390x.deb ... Unpacking pinentry-curses (1.0.0-3) over (1.0.0-2) ... Preparing to unpack .../04-libnpth0_1.5-3_s390x.deb ... Unpacking libnpth0:s390x (1.5-3) over (1.5-2) ... Preparing to unpack .../05-gnupg_2.1.15-1ubuntu8_s390x.deb ... Unpacking gnupg (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../06-gnupg-agent_2.1.15-1ubuntu8_s390x.deb ... Unpacking gnupg-agent (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../07-libsqlite3-0_3.21.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.21.0-1) over (3.19.3-3) ... Preparing to unpack .../08-libssl1.0.0_1.0.2g-1ubuntu14_s390x.deb ... Unpacking libssl1.0.0:s390x (1.0.2g-1ubuntu14) over (1.0.2g-1ubuntu13) ... Preparing to unpack .../09-multiarch-support_2.26-0ubuntu2_s390x.deb ... Unpacking multiarch-support (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../10-openssl_1.0.2g-1ubuntu14_s390x.deb ... Unpacking openssl (1.0.2g-1ubuntu14) over (1.0.2g-1ubuntu13) ... Preparing to unpack .../11-tzdata_2017c-1_all.deb ... Unpacking tzdata (2017c-1) over (2017b-2) ... Preparing to unpack .../12-libgssapi-krb5-2_1.15.2-2_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.15.2-2) over (1.15.1-2) ... Preparing to unpack .../13-libkrb5-3_1.15.2-2_s390x.deb ... Unpacking libkrb5-3:s390x (1.15.2-2) over (1.15.1-2) ... Preparing to unpack .../14-libkrb5support0_1.15.2-2_s390x.deb ... Unpacking libkrb5support0:s390x (1.15.2-2) over (1.15.1-2) ... Preparing to unpack .../15-libk5crypto3_1.15.2-2_s390x.deb ... Unpacking libk5crypto3:s390x (1.15.2-2) over (1.15.1-2) ... Preparing to unpack .../16-libkeyutils1_1.5.9-9.2ubuntu1_s390x.deb ... Unpacking libkeyutils1:s390x (1.5.9-9.2ubuntu1) over (1.5.9-9ubuntu1) ... Preparing to unpack .../17-libidn2-0_2.0.4-1_s390x.deb ... Unpacking libidn2-0:s390x (2.0.4-1) over (2.0.2-5) ... Preparing to unpack .../18-libpng16-16_1.6.34-1_s390x.deb ... Unpacking libpng16-16:s390x (1.6.34-1) over (1.6.32-2) ... Preparing to unpack .../19-apt-transport-https_1.6~alpha5_all.deb ... Unpacking apt-transport-https (1.6~alpha5) over (1.5~rc4) ... Preparing to unpack .../20-dpkg-dev_1.19.0.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../21-libdpkg-perl_1.19.0.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../22-build-essential_12.4ubuntu1_s390x.deb ... Unpacking build-essential (12.4ubuntu1) over (12.1ubuntu2) ... Preparing to unpack .../23-libpsl5_0.19.1-4_s390x.deb ... Unpacking libpsl5:s390x (0.19.1-4) over (0.18.0-2) ... Preparing to unpack .../24-libcurl3-gnutls_7.55.1-1ubuntu3_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.55.1-1ubuntu3) over (7.55.1-1ubuntu1) ... Preparing to unpack .../25-optipng_0.7.6-1ubuntu1_s390x.deb ... Unpacking optipng (0.7.6-1ubuntu1) over (0.7.6-1build1) ... Setting up libnpth0:s390x (1.5-3) ... Setting up libgomp1:s390x (7.2.0-17ubuntu1) ... Setting up libatomic1:s390x (7.2.0-17ubuntu1) ... Setting up libcc1-0:s390x (7.2.0-17ubuntu1) ... Setting up apt-transport-https (1.6~alpha5) ... Setting up libidn2-0:s390x (2.0.4-1) ... Setting up libssl1.0.0:s390x (1.0.2g-1ubuntu14) ... Setting up libpng16-16:s390x (1.6.34-1) ... Setting up libpsl5:s390x (0.19.1-4) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 7 17:07:30 UTC 2017. Universal Time is now: Thu Dec 7 17:07:30 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-3ubuntu2) ... Setting up linux-libc-dev:s390x (4.14.0-11.13) ... Setting up perl-modules-5.26 (5.26.1-3) ... Setting up libkrb5support0:s390x (1.15.2-2) ... Setting up optipng (0.7.6-1ubuntu1) ... Setting up cpp-7 (7.2.0-17ubuntu1) ... Setting up lsb-base (9.20170808ubuntu1) ... Setting up binutils-common:s390x (2.29.1-10ubuntu1) ... Setting up sensible-utils (0.0.11) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:s390x (5.26.1-3) ... Setting up openssl (1.0.2g-1ubuntu14) ... Setting up libsqlite3-0:s390x (3.21.0-1) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:s390x (2.26-0ubuntu2) ... Setting up libassuan0:s390x (2.4.5-1) ... Setting up libitm1:s390x (7.2.0-17ubuntu1) ... Setting up libk5crypto3:s390x (1.15.2-2) ... Setting up libbinutils:s390x (2.29.1-10ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.29.1-10ubuntu1) ... Setting up libgcc-7-dev:s390x (7.2.0-17ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.2.0-17ubuntu1) ... Setting up perl (5.26.1-3) ... Setting up pinentry-curses (1.0.0-3) ... Setting up libkrb5-3:s390x (1.15.2-2) ... Setting up binutils (2.29.1-10ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up gcc-7 (7.2.0-17ubuntu1) ... Setting up g++-7 (7.2.0-17ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.15.2-2) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:s390x (7.55.1-1ubuntu3) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13828740 s390x bionic-proposed -c chroot:build-PACKAGEBUILD-13828740 --arch=s390x --dist=bionic-proposed --nolog relion_1.4+dfsg-3.dsc Initiating build PACKAGEBUILD-13828740 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:39 UTC 2017 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-012.buildd +==============================================================================+ | relion 1.4+dfsg-3 (s390x) 07 Dec 2017 17:07 | +==============================================================================+ Package: relion Version: 1.4+dfsg-3 Source Version: 1.4+dfsg-3 Distribution: bionic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/relion-ZziUmF/relion-1.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/relion-ZziUmF' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13828740/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- relion_1.4+dfsg-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-umZ3BT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-umZ3BT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-umZ3BT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-umZ3BT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-umZ3BT/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-umZ3BT/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (264 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-umZ3BT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12440 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-relion-dummy' in '/<>/resolver-8rzv5P/apt_archive/sbuild-build-depends-relion-dummy.deb'. Ign:1 copy:/<>/resolver-8rzv5P/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8rzv5P/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8rzv5P/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8rzv5P/apt_archive ./ Sources [250 B] Get:5 copy:/<>/resolver-8rzv5P/apt_archive ./ Packages [566 B] Fetched 2935 B in 0s (225 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install relion build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcairo2 libcroco3 libdrm-common libdrm-nouveau2 libdrm2 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libjpeg-turbo8 libjpeg8 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpixman-1-0 libpthread-stubs0-dev libsensors4 libsigsegv2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf ucf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libfftw3-doc fltk1.3-doc libcairo2-dev libjpeg-dev libpng-dev libxext-dev libxft-dev libxinerama-dev zlib1g-dev | libz-dev libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils lm-sensors gfortran | fortran95-compiler gcj-jdk libxcb-doc m4-doc less www-browser apparmor opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl fluid libgl1-mesa-dev | libgl-dev libglu1-mesa-dev | libglu-dev libtxc-dxtn-s2tc | libtxc-dxtn-s2tc0 | libtxc-dxtn0 libglib2.0-data shared-mime-info xdg-user-dirs openmpi-bin libx11-doc libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcairo2 libcroco3 libdrm-common libdrm-nouveau2 libdrm2 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libjpeg-turbo8 libjpeg8 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpixman-1-0 libpthread-stubs0-dev libsensors4 libsigsegv2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf sbuild-build-depends-relion-dummy ucf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 106 newly installed, 1 to remove and 0 not upgraded. Need to get 32.1 MB of archives. After this operation, 141 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8rzv5P/apt_archive ./ sbuild-build-depends-relion-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x groff-base s390x 1.22.3-9 [1174 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x libbsd0 s390x 0.8.6-3 [40.2 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x bsdmainutils s390x 9.0.14ubuntu1 [178 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x man-db s390x 2.7.6.1-4 [886 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libjpeg-turbo8 s390x 1.5.2-0ubuntu5 [100 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic-mgc s390x 1:5.32-1 [185 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic1 s390x 1:5.32-1 [66.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x file s390x 1:5.32-1 [21.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libexpat1 s390x 2.2.5-0ubuntu2 [78.9 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libglib2.0-0 s390x 2.54.1-1ubuntu1 [1075 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libicu60 s390x 60.1-1ubuntu2 [7830 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-5.1ubuntu1 [593 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x gettext-base s390x 0.19.8.1-4ubuntu1 [47.7 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x libdrm-common all 2.4.88-1 [4780 B] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x libdrm2 s390x 2.4.88-1 [28.5 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libxau6 s390x 1:1.0.8-1 [7420 B] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x libxdmcp6 s390x 1:1.1.2-3 [10.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb1 s390x 1.12-1ubuntu1 [43.3 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libx11-data all 2:1.6.4-3 [114 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libx11-6 s390x 2:1.6.4-3 [546 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x libsigsegv2 s390x 2.11-1 [12.6 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x autoconf all 2.69-11 [322 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x automake all 1:1.15.1-3ubuntu1 [509 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libtool all 2.4.6-2 [194 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x dh-autoreconf all 15 [15.8 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x libarchive-zip-perl all 1.59-1 [84.0 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main s390x libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main s390x dh-strip-nondeterminism all 0.040-1 [5196 B] Get:37 http://ftpmaster.internal/ubuntu bionic/main s390x libcroco3 s390x 0.6.12-1 [74.7 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main s390x gettext s390x 0.19.8.1-4ubuntu1 [1048 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main s390x po-debconf all 1.0.20 [232 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main s390x debhelper all 10.10.9ubuntu1 [871 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x libnl-3-200 s390x 3.2.29-0ubuntu3 [50.2 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x libnl-route-3-200 s390x 3.2.29-0ubuntu3 [135 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libibverbs1 s390x 15.1-1 [41.1 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x ibverbs-providers s390x 15.1-1 [136 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x libfreetype6 s390x 2.8-0.2ubuntu2 [313 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libfontconfig1 s390x 2.12.6-0ubuntu1 [132 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x libpixman-1-0 s390x 0.34.0-1 [136 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-render0 s390x 1.12-1ubuntu1 [14.7 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-shm0 s390x 1.12-1ubuntu1 [5420 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x libcairo2 s390x 1.15.8-2 [528 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x libdrm-nouveau2 s390x 2.4.88-1 [15.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libfftw3-double3 s390x 3.3.6p2-2 [425 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x libfftw3-long3 s390x 3.3.6p2-2 [570 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x libfftw3-single3 s390x 3.3.6p2-2 [408 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main s390x libfftw3-bin s390x 3.3.6p2-2 [27.6 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main s390x libfftw3-dev s390x 3.3.6p2-2 [1273 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x libxfixes3 s390x 1:5.0.3-1 [10.4 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x libxcursor1 s390x 1:1.1.14-3ubuntu1 [19.8 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libxft2 s390x 2.3.2-1 [36.7 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libxinerama1 s390x 2:1.1.3-1 [7002 B] Get:65 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk1.3 s390x 1.3.4-6 [498 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk-cairo1.3 s390x 1.3.4-6 [6288 B] Get:67 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk-forms1.3 s390x 1.3.4-6 [12.6 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libglapi-mesa s390x 17.2.4-0ubuntu2 [38.3 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libx11-xcb1 s390x 2:1.6.4-3 [9632 B] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-dri2-0 s390x 1.12-1ubuntu1 [6842 B] Get:71 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-dri3-0 s390x 1.12-1ubuntu1 [5098 B] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-glx0 s390x 1.12-1ubuntu1 [22.5 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-present0 s390x 1.12-1ubuntu1 [5348 B] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-sync1 s390x 1.12-1ubuntu1 [8630 B] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x libxdamage1 s390x 1:1.1.4-3 [6740 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x libxshmfence1 s390x 1.2-1 [4874 B] Get:77 http://ftpmaster.internal/ubuntu bionic/main s390x libxxf86vm1 s390x 1:1.1.4-1 [9952 B] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x libsensors4 s390x 1:3.4.0-4 [27.2 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main s390x libgl1-mesa-dri s390x 17.2.4-0ubuntu2 [2448 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x libgl1-mesa-glx s390x 17.2.4-0ubuntu2 [132 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk-gl1.3 s390x 1.3.4-6 [34.7 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:83 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk-images1.3 s390x 1.3.4-6 [24.4 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main s390x xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main s390x x11proto-core-dev all 7.0.31-1 [700 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main s390x libxau-dev s390x 1:1.0.8-1 [9352 B] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x libxdmcp-dev s390x 1:1.1.2-3 [25.1 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main s390x x11proto-input-dev all 2.3.2-1 [118 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x x11proto-kb-dev all 1.0.7-1 [226 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main s390x xtrans-dev all 1.3.5-1 [70.5 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main s390x libpthread-stubs0-dev s390x 0.3-4 [3892 B] Get:92 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb1-dev s390x 1.12-1ubuntu1 [78.2 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main s390x libx11-dev s390x 2:1.6.4-3 [608 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/universe s390x libfltk1.3-dev s390x 1.3.4-6 [771 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main s390x libltdl7 s390x 2.4.6-2 [37.8 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main s390x libltdl-dev s390x 2.4.6-2 [161 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main s390x libpciaccess0 s390x 0.13.4-1ubuntu1 [16.7 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/universe s390x openmpi-common all 2.1.1-7 [140 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main s390x dh-exec s390x 0.23build1 [24.5 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc5 s390x 1.11.8-1 [91.1 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc-dev s390x 1.11.8-1 [154 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main s390x ocl-icd-libopencl1 s390x 2.2.11-1ubuntu1 [31.0 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc-plugins s390x 1.11.8-1 [11.7 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libibverbs-dev s390x 15.1-1 [96.8 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/universe s390x libopenmpi2 s390x 2.1.1-7 [1832 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/universe s390x libopenmpi-dev s390x 2.1.1-7 [918 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.1 MB in 3s (8961 kB/s) (Reading database ... 12440 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12431 files and directories currently installed.) Preparing to unpack .../000-groff-base_1.22.3-9_s390x.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../001-libbsd0_0.8.6-3_s390x.deb ... Unpacking libbsd0:s390x (0.8.6-3) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_9.0.14ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.14ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../003-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.7.6.1-4_s390x.deb ... Unpacking man-db (2.7.6.1-4) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../005-libjpeg-turbo8_1.5.2-0ubuntu5_s390x.deb ... Unpacking libjpeg-turbo8:s390x (1.5.2-0ubuntu5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.32-1_s390x.deb ... Unpacking libmagic-mgc (1:5.32-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../007-libmagic1_1%3a5.32-1_s390x.deb ... Unpacking libmagic1:s390x (1:5.32-1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.32-1_s390x.deb ... Unpacking file (1:5.32-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../009-libexpat1_2.2.5-0ubuntu2_s390x.deb ... Unpacking libexpat1:s390x (2.2.5-0ubuntu2) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../010-libglib2.0-0_2.54.1-1ubuntu1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.54.1-1ubuntu1) ... Selecting previously unselected package libicu60:s390x. Preparing to unpack .../011-libicu60_60.1-1ubuntu2_s390x.deb ... Unpacking libicu60:s390x (60.1-1ubuntu2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../012-libxml2_2.9.4+dfsg1-5.1ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-5.1ubuntu1) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-4ubuntu1_s390x.deb ... Unpacking gettext-base (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../015-libdrm-common_2.4.88-1_all.deb ... Unpacking libdrm-common (2.4.88-1) ... Selecting previously unselected package libdrm2:s390x. Preparing to unpack .../016-libdrm2_2.4.88-1_s390x.deb ... Unpacking libdrm2:s390x (2.4.88-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../017-libxau6_1%3a1.0.8-1_s390x.deb ... Unpacking libxau6:s390x (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../018-libxdmcp6_1%3a1.1.2-3_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.2-3) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../019-libxcb1_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb1:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../020-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../021-libx11-6_2%3a1.6.4-3_s390x.deb ... Unpacking libx11-6:s390x (2:1.6.4-3) ... Selecting previously unselected package libxext6:s390x. Preparing to unpack .../022-libxext6_2%3a1.3.3-1_s390x.deb ... Unpacking libxext6:s390x (2:1.3.3-1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../023-libsigsegv2_2.11-1_s390x.deb ... Unpacking libsigsegv2:s390x (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../024-m4_1.4.18-1_s390x.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../025-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../026-autotools-dev_20161112.1+nmu1_all.deb ... Unpacking autotools-dev (20161112.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../027-automake_1%3a1.15.1-3ubuntu1_all.deb ... Unpacking automake (1:1.15.1-3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../028-autopoint_0.19.8.1-4ubuntu1_all.deb ... Unpacking autopoint (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../029-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../030-dh-autoreconf_15_all.deb ... Unpacking dh-autoreconf (15) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../031-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../032-libfile-stripnondeterminism-perl_0.040-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.040-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../033-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../034-dh-strip-nondeterminism_0.040-1_all.deb ... Unpacking dh-strip-nondeterminism (0.040-1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../035-libcroco3_0.6.12-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.12-1) ... Selecting previously unselected package gettext. Preparing to unpack .../036-gettext_0.19.8.1-4ubuntu1_s390x.deb ... Unpacking gettext (0.19.8.1-4ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../037-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../038-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../039-debhelper_10.10.9ubuntu1_all.deb ... Unpacking debhelper (10.10.9ubuntu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../040-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../041-fontconfig-config_2.12.6-0ubuntu1_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu1) ... Selecting previously unselected package libnl-3-200:s390x. Preparing to unpack .../042-libnl-3-200_3.2.29-0ubuntu3_s390x.deb ... Unpacking libnl-3-200:s390x (3.2.29-0ubuntu3) ... Selecting previously unselected package libnl-route-3-200:s390x. Preparing to unpack .../043-libnl-route-3-200_3.2.29-0ubuntu3_s390x.deb ... Unpacking libnl-route-3-200:s390x (3.2.29-0ubuntu3) ... Selecting previously unselected package libibverbs1:s390x. Preparing to unpack .../044-libibverbs1_15.1-1_s390x.deb ... Unpacking libibverbs1:s390x (15.1-1) ... Selecting previously unselected package ibverbs-providers:s390x. Preparing to unpack .../045-ibverbs-providers_15.1-1_s390x.deb ... Unpacking ibverbs-providers:s390x (15.1-1) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../046-libfreetype6_2.8-0.2ubuntu2_s390x.deb ... Unpacking libfreetype6:s390x (2.8-0.2ubuntu2) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../047-libfontconfig1_2.12.6-0ubuntu1_s390x.deb ... Unpacking libfontconfig1:s390x (2.12.6-0ubuntu1) ... Selecting previously unselected package libpixman-1-0:s390x. Preparing to unpack .../048-libpixman-1-0_0.34.0-1_s390x.deb ... Unpacking libpixman-1-0:s390x (0.34.0-1) ... Selecting previously unselected package libxcb-render0:s390x. Preparing to unpack .../049-libxcb-render0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-render0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-shm0:s390x. Preparing to unpack .../050-libxcb-shm0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-shm0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxrender1:s390x. Preparing to unpack .../051-libxrender1_1%3a0.9.10-1_s390x.deb ... Unpacking libxrender1:s390x (1:0.9.10-1) ... Selecting previously unselected package libcairo2:s390x. Preparing to unpack .../052-libcairo2_1.15.8-2_s390x.deb ... Unpacking libcairo2:s390x (1.15.8-2) ... Selecting previously unselected package libdrm-nouveau2:s390x. Preparing to unpack .../053-libdrm-nouveau2_2.4.88-1_s390x.deb ... Unpacking libdrm-nouveau2:s390x (2.4.88-1) ... Selecting previously unselected package libfftw3-double3:s390x. Preparing to unpack .../054-libfftw3-double3_3.3.6p2-2_s390x.deb ... Unpacking libfftw3-double3:s390x (3.3.6p2-2) ... Selecting previously unselected package libfftw3-long3:s390x. Preparing to unpack .../055-libfftw3-long3_3.3.6p2-2_s390x.deb ... Unpacking libfftw3-long3:s390x (3.3.6p2-2) ... Selecting previously unselected package libfftw3-single3:s390x. Preparing to unpack .../056-libfftw3-single3_3.3.6p2-2_s390x.deb ... Unpacking libfftw3-single3:s390x (3.3.6p2-2) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../057-libfftw3-bin_3.3.6p2-2_s390x.deb ... Unpacking libfftw3-bin (3.3.6p2-2) ... Selecting previously unselected package libfftw3-dev:s390x. Preparing to unpack .../058-libfftw3-dev_3.3.6p2-2_s390x.deb ... Unpacking libfftw3-dev:s390x (3.3.6p2-2) ... Selecting previously unselected package libxfixes3:s390x. Preparing to unpack .../059-libxfixes3_1%3a5.0.3-1_s390x.deb ... Unpacking libxfixes3:s390x (1:5.0.3-1) ... Selecting previously unselected package libxcursor1:s390x. Preparing to unpack .../060-libxcursor1_1%3a1.1.14-3ubuntu1_s390x.deb ... Unpacking libxcursor1:s390x (1:1.1.14-3ubuntu1) ... Selecting previously unselected package libxft2:s390x. Preparing to unpack .../061-libxft2_2.3.2-1_s390x.deb ... Unpacking libxft2:s390x (2.3.2-1) ... Selecting previously unselected package libxinerama1:s390x. Preparing to unpack .../062-libxinerama1_2%3a1.1.3-1_s390x.deb ... Unpacking libxinerama1:s390x (2:1.1.3-1) ... Selecting previously unselected package libfltk1.3:s390x. Preparing to unpack .../063-libfltk1.3_1.3.4-6_s390x.deb ... Unpacking libfltk1.3:s390x (1.3.4-6) ... Selecting previously unselected package libfltk-cairo1.3:s390x. Preparing to unpack .../064-libfltk-cairo1.3_1.3.4-6_s390x.deb ... Unpacking libfltk-cairo1.3:s390x (1.3.4-6) ... Selecting previously unselected package libfltk-forms1.3:s390x. Preparing to unpack .../065-libfltk-forms1.3_1.3.4-6_s390x.deb ... Unpacking libfltk-forms1.3:s390x (1.3.4-6) ... Selecting previously unselected package libglapi-mesa:s390x. Preparing to unpack .../066-libglapi-mesa_17.2.4-0ubuntu2_s390x.deb ... Unpacking libglapi-mesa:s390x (17.2.4-0ubuntu2) ... Selecting previously unselected package libx11-xcb1:s390x. Preparing to unpack .../067-libx11-xcb1_2%3a1.6.4-3_s390x.deb ... Unpacking libx11-xcb1:s390x (2:1.6.4-3) ... Selecting previously unselected package libxcb-dri2-0:s390x. Preparing to unpack .../068-libxcb-dri2-0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-dri2-0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-dri3-0:s390x. Preparing to unpack .../069-libxcb-dri3-0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-dri3-0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-glx0:s390x. Preparing to unpack .../070-libxcb-glx0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-glx0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-present0:s390x. Preparing to unpack .../071-libxcb-present0_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-present0:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxcb-sync1:s390x. Preparing to unpack .../072-libxcb-sync1_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb-sync1:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libxdamage1:s390x. Preparing to unpack .../073-libxdamage1_1%3a1.1.4-3_s390x.deb ... Unpacking libxdamage1:s390x (1:1.1.4-3) ... Selecting previously unselected package libxshmfence1:s390x. Preparing to unpack .../074-libxshmfence1_1.2-1_s390x.deb ... Unpacking libxshmfence1:s390x (1.2-1) ... Selecting previously unselected package libxxf86vm1:s390x. Preparing to unpack .../075-libxxf86vm1_1%3a1.1.4-1_s390x.deb ... Unpacking libxxf86vm1:s390x (1:1.1.4-1) ... Selecting previously unselected package libsensors4:s390x. Preparing to unpack .../076-libsensors4_1%3a3.4.0-4_s390x.deb ... Unpacking libsensors4:s390x (1:3.4.0-4) ... Selecting previously unselected package libgl1-mesa-dri:s390x. Preparing to unpack .../077-libgl1-mesa-dri_17.2.4-0ubuntu2_s390x.deb ... Unpacking libgl1-mesa-dri:s390x (17.2.4-0ubuntu2) ... Selecting previously unselected package libgl1-mesa-glx:s390x. Preparing to unpack .../078-libgl1-mesa-glx_17.2.4-0ubuntu2_s390x.deb ... Unpacking libgl1-mesa-glx:s390x (17.2.4-0ubuntu2) ... Selecting previously unselected package libfltk-gl1.3:s390x. Preparing to unpack .../079-libfltk-gl1.3_1.3.4-6_s390x.deb ... Unpacking libfltk-gl1.3:s390x (1.3.4-6) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../080-libjpeg8_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu8) ... Selecting previously unselected package libfltk-images1.3:s390x. Preparing to unpack .../081-libfltk-images1.3_1.3.4-6_s390x.deb ... Unpacking libfltk-images1.3:s390x (1.3.4-6) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../082-xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../083-x11proto-core-dev_7.0.31-1_all.deb ... Unpacking x11proto-core-dev (7.0.31-1) ... Selecting previously unselected package libxau-dev:s390x. Preparing to unpack .../084-libxau-dev_1%3a1.0.8-1_s390x.deb ... Unpacking libxau-dev:s390x (1:1.0.8-1) ... Selecting previously unselected package libxdmcp-dev:s390x. Preparing to unpack .../085-libxdmcp-dev_1%3a1.1.2-3_s390x.deb ... Unpacking libxdmcp-dev:s390x (1:1.1.2-3) ... Selecting previously unselected package x11proto-input-dev. Preparing to unpack .../086-x11proto-input-dev_2.3.2-1_all.deb ... Unpacking x11proto-input-dev (2.3.2-1) ... Selecting previously unselected package x11proto-kb-dev. Preparing to unpack .../087-x11proto-kb-dev_1.0.7-1_all.deb ... Unpacking x11proto-kb-dev (1.0.7-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../088-xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) ... Selecting previously unselected package libpthread-stubs0-dev:s390x. Preparing to unpack .../089-libpthread-stubs0-dev_0.3-4_s390x.deb ... Unpacking libpthread-stubs0-dev:s390x (0.3-4) ... Selecting previously unselected package libxcb1-dev:s390x. Preparing to unpack .../090-libxcb1-dev_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb1-dev:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libx11-dev:s390x. Preparing to unpack .../091-libx11-dev_2%3a1.6.4-3_s390x.deb ... Unpacking libx11-dev:s390x (2:1.6.4-3) ... Selecting previously unselected package libfltk1.3-dev. Preparing to unpack .../092-libfltk1.3-dev_1.3.4-6_s390x.deb ... Unpacking libfltk1.3-dev (1.3.4-6) ... Selecting previously unselected package libltdl7:s390x. Preparing to unpack .../093-libltdl7_2.4.6-2_s390x.deb ... Unpacking libltdl7:s390x (2.4.6-2) ... Selecting previously unselected package libltdl-dev:s390x. Preparing to unpack .../094-libltdl-dev_2.4.6-2_s390x.deb ... Unpacking libltdl-dev:s390x (2.4.6-2) ... Selecting previously unselected package libpciaccess0:s390x. Preparing to unpack .../095-libpciaccess0_0.13.4-1ubuntu1_s390x.deb ... Unpacking libpciaccess0:s390x (0.13.4-1ubuntu1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../096-openmpi-common_2.1.1-7_all.deb ... Unpacking openmpi-common (2.1.1-7) ... Selecting previously unselected package dh-exec. Preparing to unpack .../097-dh-exec_0.23build1_s390x.deb ... Unpacking dh-exec (0.23build1) ... Selecting previously unselected package libhwloc5:s390x. Preparing to unpack .../098-libhwloc5_1.11.8-1_s390x.deb ... Unpacking libhwloc5:s390x (1.11.8-1) ... Selecting previously unselected package libhwloc-dev:s390x. Preparing to unpack .../099-libhwloc-dev_1.11.8-1_s390x.deb ... Unpacking libhwloc-dev:s390x (1.11.8-1) ... Selecting previously unselected package ocl-icd-libopencl1:s390x. Preparing to unpack .../100-ocl-icd-libopencl1_2.2.11-1ubuntu1_s390x.deb ... Unpacking ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../101-libhwloc-plugins_1.11.8-1_s390x.deb ... Unpacking libhwloc-plugins (1.11.8-1) ... Selecting previously unselected package libibverbs-dev:s390x. Preparing to unpack .../102-libibverbs-dev_15.1-1_s390x.deb ... Unpacking libibverbs-dev:s390x (15.1-1) ... Selecting previously unselected package libopenmpi2:s390x. Preparing to unpack .../103-libopenmpi2_2.1.1-7_s390x.deb ... Unpacking libopenmpi2:s390x (2.1.1-7) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../104-libopenmpi-dev_2.1.1-7_s390x.deb ... Unpacking libopenmpi-dev (2.1.1-7) ... Selecting previously unselected package sbuild-build-depends-relion-dummy. Preparing to unpack .../105-sbuild-build-depends-relion-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-relion-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.2.5-0ubuntu2) ... Setting up libicu60:s390x (60.1-1ubuntu2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.11-1) ... Setting up libpthread-stubs0-dev:s390x (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:s390x (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libxshmfence1:s390x (1.2-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:s390x (1.5.2-0ubuntu5) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up libglapi-mesa:s390x (17.2.4-0ubuntu2) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:s390x (3.3.6p2-2) ... Setting up libbsd0:s390x (0.8.6-3) ... Setting up ucf (3.0036) ... Setting up libxml2:s390x (2.9.4+dfsg1-5.1ubuntu1) ... Setting up libfreetype6:s390x (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:s390x (1:5.32-1) ... Setting up libdrm-common (2.4.88-1) ... Setting up libcroco3:s390x (0.6.12-1) ... Setting up libx11-xcb1:s390x (2:1.6.4-3) ... Setting up libpixman-1-0:s390x (0.34.0-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up openmpi-common (2.1.1-7) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libltdl7:s390x (2.4.6-2) ... Setting up libpciaccess0:s390x (0.13.4-1ubuntu1) ... Setting up libfftw3-single3:s390x (3.3.6p2-2) ... Setting up libsensors4:s390x (1:3.4.0-4) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:s390x (3.2.29-0ubuntu3) ... Setting up libfftw3-long3:s390x (3.3.6p2-2) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfftw3-bin (3.3.6p2-2) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up x11proto-core-dev (7.0.31-1) ... Setting up libltdl-dev:s390x (2.4.6-2) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libxau-dev:s390x (1:1.0.8-1) ... Setting up libnl-route-3-200:s390x (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up libhwloc5:s390x (1.11.8-1) ... Setting up libdrm2:s390x (2.4.88-1) ... Setting up libhwloc-plugins (1.11.8-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:s390x (1:1.1.2-3) ... Setting up libfftw3-dev:s390x (3.3.6p2-2) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libdrm-nouveau2:s390x (2.4.88-1) ... Setting up libxcb1:s390x (1.12-1ubuntu1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libtool (2.4.6-2) ... Setting up libibverbs1:s390x (15.1-1) ... Setting up libxcb-present0:s390x (1.12-1ubuntu1) ... Setting up libfontconfig1:s390x (2.12.6-0ubuntu1) ... Setting up libxcb-dri2-0:s390x (1.12-1ubuntu1) ... Setting up libxcb-dri3-0:s390x (1.12-1ubuntu1) ... Setting up libxcb-glx0:s390x (1.12-1ubuntu1) ... Setting up libxcb-render0:s390x (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:s390x (1.11.8-1) ... Setting up libx11-6:s390x (2:1.6.4-3) ... Setting up libgl1-mesa-dri:s390x (17.2.4-0ubuntu2) ... Setting up libxcb-sync1:s390x (1.12-1ubuntu1) ... Setting up ibverbs-providers:s390x (15.1-1) ... Setting up libxcb-shm0:s390x (1.12-1ubuntu1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libxcb1-dev:s390x (1.12-1ubuntu1) ... Setting up libopenmpi2:s390x (2.1.1-7) ... Setting up libx11-dev:s390x (2:1.6.4-3) ... Setting up libxft2:s390x (2.3.2-1) ... Setting up libibverbs-dev:s390x (15.1-1) ... Setting up libxdamage1:s390x (1:1.1.4-3) ... Setting up libxext6:s390x (2:1.3.3-1) ... Setting up libxfixes3:s390x (1:5.0.3-1) ... Setting up libopenmpi-dev (2.1.1-7) ... update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libxcursor1:s390x (1:1.1.14-3ubuntu1) ... Setting up libxxf86vm1:s390x (1:1.1.4-1) ... Setting up libcairo2:s390x (1.15.8-2) ... Setting up libxinerama1:s390x (2:1.1.3-1) ... Setting up libgl1-mesa-glx:s390x (17.2.4-0ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/s390x-linux-gnu_GL.conf (s390x-linux-gnu_gl_conf) in auto mode Setting up libfltk1.3:s390x (1.3.4-6) ... Setting up libfltk-images1.3:s390x (1.3.4-6) ... Setting up libfltk-forms1.3:s390x (1.3.4-6) ... Setting up libfltk-gl1.3:s390x (1.3.4-6) ... Setting up libfltk-cairo1.3:s390x (1.3.4-6) ... Setting up libfltk1.3-dev (1.3.4-6) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up dh-autoreconf (15) ... Setting up dh-exec (0.23build1) ... Setting up sbuild-build-depends-relion-dummy (0.invalid.0) ... (Reading database ... 16739 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic s390x (s390x) Toolchain package versions: binutils_2.29.1-10ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-17ubuntu1 gcc-7_7.2.0-17ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-17ubuntu1 libstdc++6_7.2.0-17ubuntu1 linux-libc-dev_4.14.0-11.13 Package versions: adduser_3.116ubuntu1 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-10ubuntu1 binutils-common_2.29.1-10ubuntu1 binutils-s390x-linux-gnu_2.29.1-10ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-17ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-exec_0.23build1 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 fontconfig-config_2.12.6-0ubuntu1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-17ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-17ubuntu1 gcc-7-base_7.2.0-17ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 ibverbs-providers_15.1-1 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.5-1 libatomic1_7.2.0-17ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-10ubuntu1 libblkid1_2.30.2-0.1ubuntu1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcairo2_1.15.8-2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-17ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu3 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libdrm-common_2.4.88-1 libdrm-nouveau2_2.4.88-1 libdrm2_2.4.88-1 libexpat1_2.2.5-0ubuntu2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-2 libfftw3-dev_3.3.6p2-2 libfftw3-double3_3.3.6p2-2 libfftw3-long3_3.3.6p2-2 libfftw3-single3_3.3.6p2-2 libfile-stripnondeterminism-perl_0.040-1 libfltk-cairo1.3_1.3.4-6 libfltk-forms1.3_1.3.4-6 libfltk-gl1.3_1.3.4-6 libfltk-images1.3_1.3.4-6 libfltk1.3_1.3.4-6 libfltk1.3-dev_1.3.4-6 libfontconfig1_2.12.6-0ubuntu1 libfreetype6_2.8-0.2ubuntu2 libgcc-7-dev_7.2.0-17ubuntu1 libgcc1_1:7.2.0-17ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgl1-mesa-dri_17.2.4-0ubuntu2 libgl1-mesa-glx_17.2.4-0ubuntu2 libglapi-mesa_17.2.4-0ubuntu2 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-17ubuntu1 libgpg-error0_1.27-5 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhwloc-dev_1.11.8-1 libhwloc-plugins_1.11.8-1 libhwloc5_1.11.8-1 libhx509-5-heimdal_7.4.0.dfsg.1-2 libibverbs-dev_15.1-1 libibverbs1_15.1-1 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-17ubuntu1 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libopenmpi-dev_2.1.1-7 libopenmpi2_2.1.1-7 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpciaccess0_0.13.4-1ubuntu1 libpcre3_2:8.39-8 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-4 libpthread-stubs0-dev_0.3-4 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsensors4_1:3.4.0-4 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.2-0.1ubuntu1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-17ubuntu1 libstdc++6_7.2.0-17ubuntu1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libudev1_235-3ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.4.0.dfsg.1-2 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.12-1ubuntu1 libxcb-dri3-0_1.12-1ubuntu1 libxcb-glx0_1.12-1ubuntu1 libxcb-present0_1.12-1ubuntu1 libxcb-render0_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb-sync1_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxcb1-dev_1.12-1ubuntu1 libxcursor1_1:1.1.14-3ubuntu1 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxft2_2.3.2-1 libxinerama1_2:1.1.3-1 libxml2_2.9.4+dfsg1-5.1ubuntu1 libxrender1_1:0.9.10-1 libxshmfence1_1.2-1 libxxf86vm1_1:1.1.4-1 linux-libc-dev_4.14.0-11.13 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-common_2.1.1-7 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-relion-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.30.2-0.1ubuntu1 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 7 13:32:04 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./relion_1.4+dfsg-3.dsc dpkg-source: info: extracting relion in relion-1.4+dfsg dpkg-source: info: unpacking relion_1.4+dfsg.orig.tar.xz dpkg-source: info: unpacking relion_1.4+dfsg-3.debian.tar.xz dpkg-source: info: applying 0001-Fix-fltk-config-path-in-configure.patch dpkg-source: info: applying 0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch dpkg-source: info: applying 0003-Add-enable-gui-flag-to-configure.patch dpkg-source: info: applying 0004-Fix-fltk-header-includes.patch dpkg-source: info: applying 0005-gcc-6.patch dpkg-source: info: applying 0006-correct-copy-overflow.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13828740 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13828740 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13828740 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 1.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build relion-1.4+dfsg dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz fakeroot debian/rules clean Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh clean --parallel --with autoreconf dh_clean -O--parallel debian/rules build-arch Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh build-arch --parallel --with autoreconf dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:16: installing './compile' configure.ac:4: installing './missing' /usr/share/automake-1.15/am/ltlibrary.am: warning: 'librelion-@RELION_API_VERSION@.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.15/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' Makefile.am:44: while processing Libtool library 'librelion-@RELION_API_VERSION@.la' Makefile.am: installing './depcomp' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We need to build 4 different versions for the 4 different binary # packages. This is necessary because unfortunately the binaries work # only with the exact same librelion they were built with. # First no MPI, no GUI (for relion-bin) ... dh_auto_configure -- --libdir=\${prefix}/lib/s390x-linux-gnu --disable-gui ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/s390x-linux-gnu --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j4; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/simple/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o src/assembly.cpp: In member function ‘void Assembly::writePDB(std::__cxx11::string)’: src/assembly.cpp:363:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] molecules[imol].name.c_str()); ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o src/ctffind_runner.cpp: In member function ‘void CtffindRunner::executeCtffind(FileName)’: src/ctffind_runner.cpp:237:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o src/preprocessing.cpp: In member function ‘void Preprocessing::runExtractParticles()’: src/preprocessing.cpp:287:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o librelion-1.4.la -rpath /usr/lib/s390x-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/7/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o -lfftw3_threads -lfftw3 -L/usr/lib/gcc/s390x-linux-gnu/7 -L/usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/7/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/7/crtendS.o /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: ranlib /<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/.' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/<>/relion-1.4+dfsg/debian/tmp/simple/usr/lib/s390x-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make clean make[2]: Entering directory '/<>/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/<>/relion-1.4+dfsg' # ... then add MPI (for relion-bin+mpi) ... MPICXX=mpicxx.openmpi dh_auto_configure -- --libdir=\${prefix}/lib/s390x-linux-gnu --enable-mpi --disable-gui ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/s390x-linux-gnu --enable-mpi --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for mpic++... mpicxx.openmpi checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j4; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/mpi/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o src/assembly.cpp: In member function ‘void Assembly::writePDB(std::__cxx11::string)’: src/assembly.cpp:363:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] molecules[imol].name.c_str()); ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o src/ctffind_runner.cpp: In member function ‘void CtffindRunner::executeCtffind(FileName)’: src/ctffind_runner.cpp:237:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o src/preprocessing.cpp: In member function ‘void Preprocessing::runExtractParticles()’: src/preprocessing.cpp:287:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o src/preprocessing_mpi.cpp: In member function ‘void PreprocessingMpi::runExtractParticles()’: src/preprocessing_mpi.cpp:58:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("mkdir -p Particles"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/preprocessing_mpi.cpp:68:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o librelion-1.4.la -rpath /usr/lib/s390x-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/7/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o -lfftw3_threads -lfftw3 -L/usr/lib/gcc/s390x-linux-gnu/7 -L/usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/7/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/7/crtendS.o /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine_mpi src/apps/refine_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess_mpi src/apps/preprocess_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick_mpi src/apps/autopick_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: ranlib /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/mpi.h src/autopicker_mpi.h src/ctffind_runner_mpi.h src/particle_polisher_mpi.h src/particle_sorter_mpi.h src/preprocessing_mpi.h src/ml_optimiser_mpi.h '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/.' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/<>/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/s390x-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make clean make[2]: Entering directory '/<>/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot refine_mpi preprocess_mpi autopick_mpi particle_polish_mpi particle_sort_mpi run_ctffind_mpi mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/<>/relion-1.4+dfsg' # ... then add GUI (for relion-bin+gui) ... dh_auto_configure -- --libdir=\${prefix}/lib/s390x-linux-gnu --enable-gui \ CPPFLAGS="$(fltk-config --cxxflags)" \ LDFLAGS="$(fltk-config --ldflags)" ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/s390x-linux-gnu --enable-gui "CPPFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 " "LDFLAGS=-lfltk -lX11" configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking for /usr/bin/fltk-config... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j4; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/gui/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o src/assembly.cpp: In member function ‘void Assembly::writePDB(std::__cxx11::string)’: src/assembly.cpp:363:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] molecules[imol].name.c_str()); ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o src/ctffind_runner.cpp: In member function ‘void CtffindRunner::executeCtffind(FileName)’: src/ctffind_runner.cpp:237:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o src/preprocessing.cpp: In member function ‘void Preprocessing::runExtractParticles()’: src/preprocessing.cpp:287:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 src/displayer.cpp: In member function ‘void multiViewerCanvas::showOriginalImage(int)’: src/displayer.cpp:743:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ src/displayer.cpp: In member function ‘void displayerGuiWindow::cb_display_i()’: src/displayer.cpp:1666:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o src/gui_jobwindow.cpp: In member function ‘void RelionJobWindow::prepareFinalCommand(std::__cxx11::string&, std::vector >&, std::__cxx11::string&)’: src/gui_jobwindow.cpp:376:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(makedirs.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~ src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_display_i()’: src/gui_mainwindow.cpp:387:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_run_i()’: src/gui_mainwindow.cpp:457:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(final_command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 src/manualpicker.cpp: In function ‘void cb_viewmic(Fl_Widget*, void*)’: src/manualpicker.cpp:109:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/manualpicker.cpp: In function ‘void cb_viewctf(Fl_Widget*, void*)’: src/manualpicker.cpp:140:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp src/apps/maingui.cpp: In function ‘int main(int, char**)’: src/apps/maingui.cpp:40:8: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd(my_dir, _MAX_PATH); ~~~~~~^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/s390x-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/7/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/s390x-linux-gnu/7 -L/usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/7/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/7/crtendS.o /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: ranlib /<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick /bin/bash ./libtool --mode=install /usr/bin/install -c display '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/displayer.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/manualpicker.h '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/.' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/<>/relion-1.4+dfsg/debian/tmp/gui/usr/lib/s390x-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make clean make[2]: Entering directory '/<>/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot manualpick display maingui mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/<>/relion-1.4+dfsg' # ... finally add MPI + GUI (for librelion-bin+mpi+gui) MPICXX=mpicxx.openmpi dh_auto_configure -- --libdir=\${prefix}/lib/s390x-linux-gnu --enable-mpi --enable-gui \ CPPFLAGS="$(fltk-config --cxxflags)" \ LDFLAGS="$(fltk-config --ldflags)" ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/s390x-linux-gnu --enable-mpi --enable-gui "CPPFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 " "LDFLAGS=-lfltk -lX11" configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for mpic++... mpicxx.openmpi checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking for /usr/bin/fltk-config... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j4; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o src/assembly.cpp: In member function ‘void Assembly::writePDB(std::__cxx11::string)’: src/assembly.cpp:363:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] molecules[imol].name.c_str()); ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o src/ctffind_runner.cpp: In member function ‘void CtffindRunner::executeCtffind(FileName)’: src/ctffind_runner.cpp:237:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o src/preprocessing.cpp: In member function ‘void Preprocessing::runExtractParticles()’: src/preprocessing.cpp:287:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o src/preprocessing_mpi.cpp: In member function ‘void PreprocessingMpi::runExtractParticles()’: src/preprocessing_mpi.cpp:58:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("mkdir -p Particles"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/preprocessing_mpi.cpp:68:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o src/displayer.cpp: In member function ‘void multiViewerCanvas::showOriginalImage(int)’: src/displayer.cpp:743:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ src/displayer.cpp: In member function ‘void displayerGuiWindow::cb_display_i()’: src/displayer.cpp:1666:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_display_i()’: src/gui_mainwindow.cpp:387:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/gui_jobwindow.cpp: In member function ‘void RelionJobWindow::prepareFinalCommand(std::__cxx11::string&, std::vector >&, std::__cxx11::string&)’: src/gui_jobwindow.cpp:376:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(makedirs.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~ src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_run_i()’: src/gui_mainwindow.cpp:457:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(final_command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o src/manualpicker.cpp: In function ‘void cb_viewmic(Fl_Widget*, void*)’: src/manualpicker.cpp:109:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/manualpicker.cpp: In function ‘void cb_viewctf(Fl_Widget*, void*)’: src/manualpicker.cpp:140:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp src/apps/maingui.cpp: In function ‘int main(int, char**)’: src/apps/maingui.cpp:40:8: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd(my_dir, _MAX_PATH); ~~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/s390x-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/7/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/s390x-linux-gnu/7 -L/usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/7/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/7/crtendS.o /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine_mpi src/apps/refine_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: install: ranlib /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick /bin/bash ./libtool --mode=install /usr/bin/install -c display '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/mpi.h src/autopicker_mpi.h src/ctffind_runner_mpi.h src/particle_polisher_mpi.h src/particle_sorter_mpi.h src/preprocessing_mpi.h src/ml_optimiser_mpi.h src/displayer.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/manualpicker.h '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/.' /bin/mkdir -p '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/<>/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/s390x-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Leaving directory '/<>/relion-1.4+dfsg' make clean make[2]: Entering directory '/<>/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot refine_mpi preprocess_mpi autopick_mpi particle_polish_mpi particle_sort_mpi run_ctffind_mpi manualpick display maingui mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/<>/relion-1.4+dfsg' # clear dependency_libs field in *.la files # see lintian non-empty-dependency_libs-in-la-file for reference sed -i "/dependency_libs/ s/'.*'/''/" $(find debian/tmp/ -name '*.la') make[1]: Leaving directory '/<>/relion-1.4+dfsg' dh_auto_test -a -O--parallel make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o src/assembly.cpp: In member function ‘void Assembly::writePDB(std::__cxx11::string)’: src/assembly.cpp:363:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] molecules[imol].name.c_str()); ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp src/ctffind_runner.cpp: In member function ‘void CtffindRunner::executeCtffind(FileName)’: src/ctffind_runner.cpp:237:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp src/preprocessing.cpp: In member function ‘void Preprocessing::runExtractParticles()’: src/preprocessing.cpp:287:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o src/preprocessing_mpi.cpp: In member function ‘void PreprocessingMpi::runExtractParticles()’: src/preprocessing_mpi.cpp:58:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("mkdir -p Particles"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/preprocessing_mpi.cpp:68:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o src/displayer.cpp: In member function ‘void multiViewerCanvas::showOriginalImage(int)’: src/displayer.cpp:743:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ src/displayer.cpp: In member function ‘void displayerGuiWindow::cb_display_i()’: src/displayer.cpp:1666:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cl.c_str()); ~~~~~~^~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o src/gui_jobwindow.cpp: In member function ‘void RelionJobWindow::prepareFinalCommand(std::__cxx11::string&, std::vector >&, std::__cxx11::string&)’: src/gui_jobwindow.cpp:376:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(makedirs.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~ src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_display_i()’: src/gui_mainwindow.cpp:387:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/gui_mainwindow.cpp: In member function ‘void RelionMainWindow::cb_run_i()’: src/gui_mainwindow.cpp:457:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(final_command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o src/manualpicker.cpp: In function ‘void cb_viewmic(Fl_Widget*, void*)’: src/manualpicker.cpp:109:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ src/manualpicker.cpp: In function ‘void cb_viewctf(Fl_Widget*, void*)’: src/manualpicker.cpp:140:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp src/apps/maingui.cpp: In function ‘int main(int, char**)’: src/apps/maingui.cpp:40:8: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd(my_dir, _MAX_PATH); ~~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/s390x-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/s390x-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crti.o /usr/lib/gcc/s390x-linux-gnu/7/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/s390x-linux-gnu/7 -L/usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu -L/usr/lib/gcc/s390x-linux-gnu/7/../../../../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/s390x-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/s390x-linux-gnu/7/crtendS.o /usr/lib/gcc/s390x-linux-gnu/7/../../../s390x-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine_mpi src/apps/refine_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[1]: Leaving directory '/<>/relion-1.4+dfsg' fakeroot debian/rules binary-arch Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh binary-arch --parallel --with autoreconf dh_testroot -a -O--parallel debian/rules override_dh_prep make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We don't want debian/tmp to be removed again ... dh_prep -X debian/tmp make[1]: Leaving directory '/<>/relion-1.4+dfsg' debian/rules override_dh_install-arch make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh_install -a # relion_qsub.csh should just go to GUI d/examples find debian/relion-bi*/usr/bin -name relion_qsub.csh -delete make[1]: Leaving directory '/<>/relion-1.4+dfsg' dh_installdocs -a -O--parallel dh_installchangelogs -a -O--parallel dh_installexamples -a -O--parallel dh_lintian -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_missing -a -O--parallel dh_strip -a -O--parallel dh_makeshlibs -a -O--parallel debian/rules override_dh_shlibdeps make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # First for all packages apart from relion-bin* dh_shlibdeps -- -xrelion-bin -xrelion-bin+mpi -xrelion-bin+gui -xrelion-bin+mpi+gui dpkg-shlibdeps: warning: symbol MPI_Win_set_name used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Wait used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Win_unlock used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Gatherv used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Group_rank used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Type_create_resized used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Exscan used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Win_post used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Win_get_group used by debian/librelion+mpi-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion+gui-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion+gui-1.4-1/usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries # Now for the relion-bin* packages for pkg in relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui ; do \ echo -e "\n-- Info: Run dpkg-shlibdeps for $pkg --\n"; \ dpkg-shlibdeps -e debian/${pkg}/usr/bin/relion_* \ -Sdebian/librelion${pkg#relion-bin}-1.4-1 \ -Tdebian/${pkg}.substvars; \ done -e -- Info: Run dpkg-shlibdeps for relion-bin -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_singlefiles' -e -- Info: Run dpkg-shlibdeps for relion-bin+mpi -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_printtable' -e -- Info: Run dpkg-shlibdeps for relion-bin+gui -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_printtable' -e -- Info: Run dpkg-shlibdeps for relion-bin+mpi+gui -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_singlefiles' make[1]: Leaving directory '/<>/relion-1.4+dfsg' dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin+gui-dbgsym (in debian/.debhelper/relion-bin+gui/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing librelion+gui-dev (in debian/librelion+gui-dev); do_strip: , oemstrip: pkgstriptranslations: processing relion-bin (in debian/relion-bin); do_strip: , oemstrip: pkgstriptranslations: processing librelion+mpi-1.4-1-dbgsym (in debian/.debhelper/librelion+mpi-1.4-1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/relion-bin/DEBIAN/control, package relion-bin, directory debian/relion-bin pkgstripfiles: processing control file: debian/.debhelper/relion-bin+gui/dbgsym-root/DEBIAN/control, package relion-bin+gui-dbgsym, directory debian/.debhelper/relion-bin+gui/dbgsym-root pkgstripfiles: processing control file: debian/librelion+gui-dev/DEBIAN/control, package librelion+gui-dev, directory debian/librelion+gui-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+gui-dbgsym ... Searching for duplicated docs in dependency librelion-1.4-1... INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin+gui-dbgsym' in 'debian/.debhelper/scratch-space/build-relion-bin+gui/relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.deb'. symlinking changelog.Debian.gz in relion-bin to file in librelion-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin' in '../relion-bin_1.4+dfsg-3_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/librelion+mpi-1.4-1/dbgsym-root/DEBIAN/control, package librelion+mpi-1.4-1-dbgsym, directory debian/.debhelper/librelion+mpi-1.4-1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+mpi-1.4-1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+mpi-1.4-1-dbgsym' in 'debian/.debhelper/scratch-space/build-librelion+mpi-1.4-1/librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin-dbgsym (in debian/.debhelper/relion-bin/dbgsym-root); do_strip: , oemstrip: Renaming relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.deb to relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.ddeb INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin+mpi+gui (in debian/relion-bin+mpi+gui); do_strip: , oemstrip: pkgstripfiles: processing control file: debian/.debhelper/relion-bin/dbgsym-root/DEBIAN/control, package relion-bin-dbgsym, directory debian/.debhelper/relion-bin/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin-dbgsym' in 'debian/.debhelper/scratch-space/build-relion-bin/relion-bin-dbgsym_1.4+dfsg-3_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/relion-bin+mpi+gui/DEBIAN/control, package relion-bin+mpi+gui, directory debian/relion-bin+mpi+gui INFO: pkgstripfiles: waiting for lock (relion-bin+mpi+gui) ... Renaming relion-bin-dbgsym_1.4+dfsg-3_s390x.deb to relion-bin-dbgsym_1.4+dfsg-3_s390x.ddeb Renaming librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb to librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin+mpi (in debian/relion-bin+mpi); do_strip: , oemstrip: INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion+gui-1.4-1 (in debian/librelion+gui-1.4-1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/relion-bin+mpi/DEBIAN/control, package relion-bin+mpi, directory debian/relion-bin+mpi Searching for duplicated docs in dependency librelion+mpi-1.4-1... symlinking changelog.Debian.gz in relion-bin+mpi to file in librelion+mpi-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+mpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin+mpi' in '../relion-bin+mpi_1.4+dfsg-3_s390x.deb'. pkgstripfiles: processing control file: debian/librelion+gui-1.4-1/DEBIAN/control, package librelion+gui-1.4-1, directory debian/librelion+gui-1.4-1 INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (relion-bin+mpi+gui) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin+mpi-dbgsym (in debian/.debhelper/relion-bin+mpi/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/relion-bin+mpi/dbgsym-root/DEBIAN/control, package relion-bin+mpi-dbgsym, directory debian/.debhelper/relion-bin+mpi/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+mpi-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin+mpi-dbgsym' in 'debian/.debhelper/scratch-space/build-relion-bin+mpi/relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (relion-bin+mpi+gui) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... Renaming relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.deb to relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.ddeb INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstriptranslations version 131 INFO: pkgstripfiles: waiting for lock (relion-bin+mpi+gui) ... pkgstriptranslations: processing relion-bin+gui (in debian/relion-bin+gui); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/relion-bin+gui/DEBIAN/control, package relion-bin+gui, directory debian/relion-bin+gui Searching for duplicated docs in dependency librelion+gui-1.4-1... symlinking changelog.Debian.gz in relion-bin+gui to file in librelion+gui-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+gui ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin+gui' in '../relion-bin+gui_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... Searching for duplicated docs in dependency librelion-1.4-1... symlinking changelog.Debian.gz in relion-bin+mpi+gui to file in librelion-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+mpi+gui ... pkgstripfiles: No PNG files. dpkg-deb: building package 'relion-bin+mpi+gui' in '../relion-bin+mpi+gui_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstriptranslations version 131 pkgstriptranslations: processing relion-bin+mpi+gui-dbgsym (in debian/.debhelper/relion-bin+mpi+gui/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/relion-bin+mpi+gui/dbgsym-root/DEBIAN/control, package relion-bin+mpi+gui-dbgsym, directory debian/.debhelper/relion-bin+mpi+gui/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package relion-bin+mpi+gui-dbgsym ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... dpkg-deb: building package 'relion-bin+mpi+gui-dbgsym' in 'debian/.debhelper/scratch-space/build-relion-bin+mpi+gui/relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... Renaming relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.deb to relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion-dev (in debian/librelion-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librelion-dev/DEBIAN/control, package librelion-dev, directory debian/librelion-dev Searching for duplicated docs in dependency librelion-1.4-1... symlinking changelog.Debian.gz in librelion-dev to file in librelion-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion-dev' in '../librelion-dev_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstriptranslations version 131 INFO: pkgstripfiles: waiting for lock (librelion+gui-dev) ... pkgstriptranslations: processing librelion+mpi-dev (in debian/librelion+mpi-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librelion+mpi-dev/DEBIAN/control, package librelion+mpi-dev, directory debian/librelion+mpi-dev Searching for duplicated docs in dependency librelion+mpi-1.4-1... symlinking changelog.Debian.gz in librelion+mpi-dev to file in librelion+mpi-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+mpi-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+mpi-dev' in '../librelion+mpi-dev_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... Searching for duplicated docs in dependency librelion+gui-1.4-1... symlinking changelog.Debian.gz in librelion+gui-dev to file in librelion+gui-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+gui-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+gui-dev' in '../librelion+gui-dev_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion+mpi+gui-dev (in debian/librelion+mpi+gui-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librelion+mpi+gui-dev/DEBIAN/control, package librelion+mpi+gui-dev, directory debian/librelion+mpi+gui-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+mpi+gui-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+mpi+gui-dev' in '../librelion+mpi+gui-dev_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion-1.4-1 (in debian/librelion-1.4-1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librelion-1.4-1/DEBIAN/control, package librelion-1.4-1, directory debian/librelion-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion-1.4-1 ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... dpkg-deb: building package 'librelion-1.4-1' in '../librelion-1.4-1_1.4+dfsg-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion-1.4-1-dbgsym (in debian/.debhelper/librelion-1.4-1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/librelion-1.4-1/dbgsym-root/DEBIAN/control, package librelion-1.4-1-dbgsym, directory debian/.debhelper/librelion-1.4-1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion-1.4-1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion-1.4-1-dbgsym' in 'debian/.debhelper/scratch-space/build-librelion-1.4-1/librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb'. INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... INFO: pkgstripfiles: waiting for lock (librelion+gui-1.4-1) ... Renaming librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb to librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion+mpi-1.4-1 (in debian/librelion+mpi-1.4-1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librelion+mpi-1.4-1/DEBIAN/control, package librelion+mpi-1.4-1, directory debian/librelion+mpi-1.4-1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+mpi-1.4-1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+mpi-1.4-1' in '../librelion+mpi-1.4-1_1.4+dfsg-3_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+gui-1.4-1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+gui-1.4-1' in '../librelion+gui-1.4-1_1.4+dfsg-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librelion+gui-1.4-1-dbgsym (in debian/.debhelper/librelion+gui-1.4-1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/librelion+gui-1.4-1/dbgsym-root/DEBIAN/control, package librelion+gui-1.4-1-dbgsym, directory debian/.debhelper/librelion+gui-1.4-1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package librelion+gui-1.4-1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librelion+gui-1.4-1-dbgsym' in 'debian/.debhelper/scratch-space/build-librelion+gui-1.4-1/librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb'. Renaming librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.deb to librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../relion_1.4+dfsg-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build relion-1.4+dfsg dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171207-1714 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ relion_1.4+dfsg-3_s390x.changes: -------------------------------- Format: 1.8 Date: Thu, 07 Dec 2017 10:27:59 +0100 Source: relion Binary: relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui librelion-dev-common librelion-dev librelion+mpi-dev librelion+gui-dev librelion+mpi+gui-dev librelion-1.4-1 librelion+mpi-1.4-1 librelion+gui-1.4-1 librelion+mpi+gui-1.4-1 Architecture: s390x Version: 1.4+dfsg-3 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gert Wollny Description: librelion+gui-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion+mpi+gui-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+mpi+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion+mpi-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+mpi-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion-dev-common - C++ API for RELION (3D reconstructions in cryo-electron microscop relion-bin - toolkit for 3D reconstructions in cryo-electron microscopy relion-bin+gui - parallel toolkit for 3D reconstructions in cryo-electron microsco relion-bin+mpi - parallel toolkit for 3D reconstructions in cryo-electron microsco relion-bin+mpi+gui - parallel toolkit for 3D reconstructions in cryo-electron microsco Closes: 873865 Changes: relion (1.4+dfsg-3) unstable; urgency=medium . * Team upload * d/control: Enable all archs, Closes: #873865 * d/control: Update standards to 4.1.1 (no changes) Checksums-Sha1: c9da5feb9685d94087920884cb3265c9b5e7cb94 5843328 librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb 637cc1ed2d1871b625a119d35685cc8c40a985e6 562728 librelion+gui-1.4-1_1.4+dfsg-3_s390x.deb 68ec744e89fae9ef45406a891d5b0813d0771b1b 682832 librelion+gui-dev_1.4+dfsg-3_s390x.deb 0c0c4b800e33d408df9537f089a62f34ceedb9e3 775396 librelion+mpi+gui-dev_1.4+dfsg-3_s390x.deb fa1621112099aa140415eaa3c562f94953bd3116 5906284 librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb ca0ac117e995b69d1df00869252415c78a7ec3a6 506964 librelion+mpi-1.4-1_1.4+dfsg-3_s390x.deb 733b7e7616040432edf1ec21e917952f730a6150 663268 librelion+mpi-dev_1.4+dfsg-3_s390x.deb 2a9f8fdbb267e7dcde8de026fe19e7025800949a 4952560 librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb ff355f36dea65d94be99580bb96882ac817c065b 463608 librelion-1.4-1_1.4+dfsg-3_s390x.deb b512ce83a5a687d9a6660949a5585b77c53d6894 572780 librelion-dev_1.4+dfsg-3_s390x.deb d53773322d3feeb8c1f303be3b4fca2f945822b5 2696276 relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 59b4edda3901d6a42fb43d37b295bfc54ed8ed2a 171776 relion-bin+gui_1.4+dfsg-3_s390x.deb 7f1b5a9e9d20d4867f5274a6ca6a4d89a97a1269 3756988 relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 8139f27da77a1621cd1414228eaed67af9b90fa3 218228 relion-bin+mpi+gui_1.4+dfsg-3_s390x.deb 4409e2811b550690a34d07c07c1428dbb29c21dc 3552516 relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.ddeb ae9523e3cf648d39b4a437709516b92aaef25ccb 220268 relion-bin+mpi_1.4+dfsg-3_s390x.deb 4e2d0abab5091a6fa6baa8dd81b8d5e786a38fdb 2493256 relion-bin-dbgsym_1.4+dfsg-3_s390x.ddeb 4bcdc530ea1c62d7986adcc1ab3d9920adef512d 168168 relion-bin_1.4+dfsg-3_s390x.deb a935a09ec48f215f81976949cd5a834b6340ca4c 12076 relion_1.4+dfsg-3_s390x.buildinfo Checksums-Sha256: ceeceb66e388a06ab80d107aeb157d76fd9d9910546c50cab73436d4e92ff7b9 5843328 librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb e7bc05af8d021ef04ae0141966d00b4cdda831d60c401c722943b9c37f32e250 562728 librelion+gui-1.4-1_1.4+dfsg-3_s390x.deb c113a833d20287268452a3101c1c91b3153b269cf63a5924573d3408a6044eb7 682832 librelion+gui-dev_1.4+dfsg-3_s390x.deb 8782ac03f501328d4814b7b8e7a9a675cc2d806fa96d8f28b6af15ffa906ce3c 775396 librelion+mpi+gui-dev_1.4+dfsg-3_s390x.deb 537f2a8b40fbc78efb9287cb4c12709550b1f027a30952503eb07e01a8b5fb8e 5906284 librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb e4cfe18befbbd9fdea46a71d704e54eda4435e131f76920a38479f48a61feffd 506964 librelion+mpi-1.4-1_1.4+dfsg-3_s390x.deb 880a20e1eb2b4644a0150eda7faec5f528420516d12343f7e44f9effeb0f3ef5 663268 librelion+mpi-dev_1.4+dfsg-3_s390x.deb 015b10ac7136f3620cdd573bbd0c3eb926886282703b90ea241fbe2304ffdb27 4952560 librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb 9f1b398ec31866a6bb35599ada5cf1aa6d43ffe5c78fd6b71ce25ffd7f0e6126 463608 librelion-1.4-1_1.4+dfsg-3_s390x.deb 9fb547d18b486b4f35f8d7fd7b7e4025562007fdbd509987452ca9a7b3d54d78 572780 librelion-dev_1.4+dfsg-3_s390x.deb cf018508c86e1d26a19a254626a4274ea28fb4affca8d9795bb97d845119d44d 2696276 relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 6162c62d40ee5e57055569c9b6d32b7d83bf04839ffcc20495a723ee4ad87008 171776 relion-bin+gui_1.4+dfsg-3_s390x.deb 1312cea441a3a98c7af2744caa2ec0ef81b016451edae6217992ef6cbd2e7848 3756988 relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 1561344d59c6bf4cca562f26cd23051f7a1df0ed2efa4f7c834d3666172137fc 218228 relion-bin+mpi+gui_1.4+dfsg-3_s390x.deb a5d27cb354dc4bdec9cb3051aab91747a31fcc49cb56a5bac9f1b865a0e0df30 3552516 relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.ddeb 02daaaea172995c7b89a7d6dc368f10cf460913224b7104c75b94a011738683f 220268 relion-bin+mpi_1.4+dfsg-3_s390x.deb 8b484586b9daf8af43ada21e996bc9719674c5403363523c64fbbc0252d7cd24 2493256 relion-bin-dbgsym_1.4+dfsg-3_s390x.ddeb 29f996c09cdadc5e419e8e57c1f0f9bbd84e7f6b9c5ebf18b330c335daa3b0cf 168168 relion-bin_1.4+dfsg-3_s390x.deb 13795587f86f1ef9edfe7ddd3f46b326a3d82a3b29964e32abebce766456b7b8 12076 relion_1.4+dfsg-3_s390x.buildinfo Files: 7a7d31847d4bcd201f36f3a9b07a2b96 5843328 debug optional librelion+gui-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb 3ba747ad0e4128ef847432b7874c7a26 562728 libs optional librelion+gui-1.4-1_1.4+dfsg-3_s390x.deb e70578ba2be68cc7052b4d65d8e73c84 682832 libdevel optional librelion+gui-dev_1.4+dfsg-3_s390x.deb 045e88234278aa2a6a43686230ccc084 775396 libdevel optional librelion+mpi+gui-dev_1.4+dfsg-3_s390x.deb ac18815280af48338e6b000138d76c5a 5906284 debug optional librelion+mpi-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb 1c4e4ac34b484ec861b4dd2ada4ab277 506964 libs optional librelion+mpi-1.4-1_1.4+dfsg-3_s390x.deb e3eeaef97aecc8ebeb0bf7ea8c07268a 663268 libdevel optional librelion+mpi-dev_1.4+dfsg-3_s390x.deb d66fc64c5a460c459e6928dc27444678 4952560 debug optional librelion-1.4-1-dbgsym_1.4+dfsg-3_s390x.ddeb 85c55aefa0db9ec5fcdf159fa2575499 463608 libs optional librelion-1.4-1_1.4+dfsg-3_s390x.deb 9f39d6d64223795c34e3a1c0358293af 572780 libdevel optional librelion-dev_1.4+dfsg-3_s390x.deb db1bfd9af2ab92940879466c67d510df 2696276 debug optional relion-bin+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 893d50f10dc3c48d89c86c068e88ee7b 171776 science optional relion-bin+gui_1.4+dfsg-3_s390x.deb 239c014cd4d90a603cdaf42e72a363f0 3756988 debug optional relion-bin+mpi+gui-dbgsym_1.4+dfsg-3_s390x.ddeb 43130b2d72e981b213cf2728b60ab400 218228 science optional relion-bin+mpi+gui_1.4+dfsg-3_s390x.deb ca9f863bf966d41df39346aaed4503e4 3552516 debug optional relion-bin+mpi-dbgsym_1.4+dfsg-3_s390x.ddeb 3196a2aa03561f5f29e6fea5bfda845a 220268 science optional relion-bin+mpi_1.4+dfsg-3_s390x.deb 95bd41806939cef87ecc9e3709ac0459 2493256 debug optional relion-bin-dbgsym_1.4+dfsg-3_s390x.ddeb a645bf3dc6bc6bdbac2041cf3469ee1c 168168 science optional relion-bin_1.4+dfsg-3_s390x.deb 2f5b7b1d2b29fe586aa321e941993b6d 12076 science optional relion_1.4+dfsg-3_s390x.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librelion+gui-1.4-1_1.4+dfsg-3_s390x.deb ---------------------------------------- new debian package, version 2.0. size 562728 bytes: control archive=1180 bytes. 1277 bytes, 23 lines control 329 bytes, 4 lines md5sums 36 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: librelion+gui-1.4-1 Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1946 Depends: libc6 (>= 2.4), libfftw3-double3 (>= 3.3.5), libfltk1.3 (>= 1.3.1), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Conflicts: librelion+gui-1.3-1, librelion+gui-1.3-1v5, librelion+mpi+gui-1.3-1, librelion+mpi+gui-1.3-1v5, librelion+mpi+gui-1.4-1, librelion+mpi-1.3-1, librelion+mpi-1.3-1v5, librelion+mpi-1.4-1, librelion-1.3-1, librelion-1.3-1v5, librelion-1.4-1 Replaces: librelion+gui-1.3-1, librelion+gui-1.3-1v5 Section: libs Priority: optional Multi-Arch: same Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: RELION dynnamic library (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the runtime library for use with GUI but without MPI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1 -> librelion-1.4.so.1.0.4 -rw-r--r-- root/root 1975288 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+gui-1.4-1/ -rw-r--r-- root/root 861 2017-12-07 09:27 ./usr/share/doc/librelion+gui-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion+gui-1.4-1/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 395 2017-12-07 09:27 ./usr/share/lintian/overrides/librelion+gui-1.4-1 librelion+gui-dev_1.4+dfsg-3_s390x.deb -------------------------------------- new debian package, version 2.0. size 682832 bytes: control archive=1020 bytes. 978 bytes, 21 lines control 383 bytes, 5 lines md5sums Package: librelion+gui-dev Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4857 Depends: librelion+gui-1.4-1 (= 1.4+dfsg-3), librelion-dev-common Conflicts: librelion+mpi+gui-dev, librelion+mpi-dev, librelion-dev Section: libdevel Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the developers API package for use with GUI but without MPI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/src/ -rw-r--r-- root/root 3216 2017-12-07 09:27 ./usr/include/relion-1.4/src/manualpicker.h drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 4950916 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.a -rw-r--r-- root/root 983 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.la lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so -> librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 284 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/relion-1.4.pc drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+gui-dev/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+gui-dev/changelog.Debian.gz -> ../librelion+gui-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion+gui-dev/copyright librelion+mpi+gui-dev_1.4+dfsg-3_s390x.deb ------------------------------------------ new debian package, version 2.0. size 775396 bytes: control archive=1272 bytes. 974 bytes, 21 lines control 1033 bytes, 13 lines md5sums Package: librelion+mpi+gui-dev Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6400 Depends: librelion+mpi+gui-1.4-1 (= 1.4+dfsg-3), librelion-dev-common Conflicts: librelion+gui-dev, librelion+mpi-dev, librelion-dev Section: libdevel Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the developers API package for use with MPI and GUI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/src/ -rw-r--r-- root/root 611 2017-12-07 09:27 ./usr/include/relion-1.4/src/autopicker_mpi.h -rw-r--r-- root/root 1471 2017-12-07 09:27 ./usr/include/relion-1.4/src/ctffind_runner_mpi.h -rw-r--r-- root/root 3216 2017-12-07 09:27 ./usr/include/relion-1.4/src/manualpicker.h -rw-r--r-- root/root 4242 2017-12-07 09:27 ./usr/include/relion-1.4/src/ml_optimiser_mpi.h -rw-r--r-- root/root 3359 2017-12-07 09:27 ./usr/include/relion-1.4/src/mpi.h -rw-r--r-- root/root 2112 2017-12-07 09:27 ./usr/include/relion-1.4/src/particle_polisher_mpi.h -rw-r--r-- root/root 1480 2017-12-07 09:27 ./usr/include/relion-1.4/src/particle_sorter_mpi.h -rw-r--r-- root/root 1499 2017-12-07 09:27 ./usr/include/relion-1.4/src/preprocessing_mpi.h drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 6510784 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.a -rw-r--r-- root/root 983 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.la lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so -> librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 284 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/relion-1.4.pc drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+mpi+gui-dev/ -rw-r--r-- root/root 861 2017-12-07 09:27 ./usr/share/doc/librelion+mpi+gui-dev/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion+mpi+gui-dev/copyright librelion+mpi-1.4-1_1.4+dfsg-3_s390x.deb ---------------------------------------- new debian package, version 2.0. size 506964 bytes: control archive=1176 bytes. 1254 bytes, 23 lines control 329 bytes, 4 lines md5sums 36 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: librelion+mpi-1.4-1 Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1704 Depends: libc6 (>= 2.4), libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Conflicts: librelion+gui-1.3-1, librelion+gui-1.3-1v5, librelion+gui-1.4-1, librelion+mpi+gui-1.3-1, librelion+mpi+gui-1.3-1v5, librelion+mpi+gui-1.4-1, librelion+mpi-1.3-1, librelion+mpi-1.3-1v5, librelion-1.3-1, librelion-1.3-1v5, librelion-1.4-1 Replaces: librelion+mpi-1.3-1, librelion+mpi-1.3-1v5 Section: libs Priority: optional Multi-Arch: same Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: RELION dynnamic library (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the runtime library for use with MPI but without GUI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1 -> librelion-1.4.so.1.0.4 -rw-r--r-- root/root 1726536 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-1.4-1/ -rw-r--r-- root/root 861 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-1.4-1/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 355 2017-12-07 09:27 ./usr/share/lintian/overrides/librelion+mpi-1.4-1 librelion+mpi-dev_1.4+dfsg-3_s390x.deb -------------------------------------- new debian package, version 2.0. size 663268 bytes: control archive=1204 bytes. 978 bytes, 21 lines control 863 bytes, 11 lines md5sums Package: librelion+mpi-dev Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5560 Depends: librelion+mpi-1.4-1 (= 1.4+dfsg-3), librelion-dev-common Conflicts: librelion+gui-dev, librelion+mpi+gui-dev, librelion-dev Section: libdevel Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the developers API package for use with MPI but without GUI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/include/relion-1.4/src/ -rw-r--r-- root/root 611 2017-12-07 09:27 ./usr/include/relion-1.4/src/autopicker_mpi.h -rw-r--r-- root/root 1471 2017-12-07 09:27 ./usr/include/relion-1.4/src/ctffind_runner_mpi.h -rw-r--r-- root/root 4242 2017-12-07 09:27 ./usr/include/relion-1.4/src/ml_optimiser_mpi.h -rw-r--r-- root/root 3359 2017-12-07 09:27 ./usr/include/relion-1.4/src/mpi.h -rw-r--r-- root/root 2112 2017-12-07 09:27 ./usr/include/relion-1.4/src/particle_polisher_mpi.h -rw-r--r-- root/root 1480 2017-12-07 09:27 ./usr/include/relion-1.4/src/particle_sorter_mpi.h -rw-r--r-- root/root 1499 2017-12-07 09:27 ./usr/include/relion-1.4/src/preprocessing_mpi.h drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 5654708 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.a -rw-r--r-- root/root 983 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.la lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so -> librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 284 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/relion-1.4.pc drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-dev/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-dev/changelog.Debian.gz -> ../librelion+mpi-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion+mpi-dev/copyright librelion-1.4-1_1.4+dfsg-3_s390x.deb ------------------------------------ new debian package, version 2.0. size 463608 bytes: control archive=1128 bytes. 1213 bytes, 23 lines control 239 bytes, 3 lines md5sums 32 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: librelion-1.4-1 Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1525 Depends: libc6 (>= 2.4), libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Conflicts: librelion+gui-1.3-1, librelion+gui-1.3-1v5, librelion+gui-1.4-1, librelion+mpi+gui-1.3-1, librelion+mpi+gui-1.3-1v5, librelion+mpi+gui-1.4-1, librelion+mpi-1.3-1, librelion+mpi-1.3-1v5, librelion+mpi-1.4-1, librelion-1.3-1, librelion-1.3-1v5 Replaces: librelion-1.3-1, librelion-1.3-1v5 Section: libs Priority: optional Multi-Arch: same Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: RELION dynnamic library (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the runtime library. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1 -> librelion-1.4.so.1.0.4 -rw-r--r-- root/root 1546312 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion-1.4-1/ -rw-r--r-- root/root 861 2017-12-07 09:27 ./usr/share/doc/librelion-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion-1.4-1/copyright librelion-dev_1.4+dfsg-3_s390x.deb ---------------------------------- new debian package, version 2.0. size 572780 bytes: control archive=972 bytes. 969 bytes, 21 lines control 303 bytes, 4 lines md5sums Package: librelion-dev Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4013 Depends: librelion-1.4-1 (= 1.4+dfsg-3), librelion-dev-common Conflicts: librelion+gui-dev, librelion+mpi+gui-dev, librelion+mpi-dev Section: libdevel Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: C++ API for RELION (3D reconstructions in cryo-electron microscopy) RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . This is the developers API package for use without GUI and MPI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 4092984 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.a -rw-r--r-- root/root 983 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.la lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/librelion-1.4.so -> librelion-1.4.so.1.0.4 drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 284 2017-12-07 09:27 ./usr/lib/s390x-linux-gnu/pkgconfig/relion-1.4.pc drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion-dev/ lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/librelion-dev/changelog.Debian.gz -> ../librelion-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/librelion-dev/copyright relion-bin+gui_1.4+dfsg-3_s390x.deb ----------------------------------- new debian package, version 2.0. size 171776 bytes: control archive=1704 bytes. 1016 bytes, 22 lines control 1881 bytes, 29 lines md5sums Package: relion-bin+gui Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 884 Depends: libc6 (>= 2.4), libfltk1.3, libgcc1 (>= 1:3.0), librelion+gui-1.4-1, libstdc++6 (>= 5.2) Conflicts: relion-bin, relion-bin+mpi, relion-bin+mpi+gui Section: science Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: parallel toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . relion-bin+gui provides the serial command-line tools and the graphical user interface. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/bin/ -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_autopick -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_display -rwxr-xr-x root/root 63600 2017-12-07 09:27 ./usr/bin/relion_find_tiltpairs -rwxr-xr-x root/root 129136 2017-12-07 09:27 ./usr/bin/relion_image_handler -rwxr-xr-x root/root 10336 2017-12-07 09:27 ./usr/bin/relion_maingui -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_manualpick -rwxr-xr-x root/root 88168 2017-12-07 09:27 ./usr/bin/relion_mask_create -rwxr-xr-x root/root 34920 2017-12-07 09:27 ./usr/bin/relion_particle_polish -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_particle_sort -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_postprocess -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_preprocess -rwxr-xr-x root/root 108656 2017-12-07 09:27 ./usr/bin/relion_project -rwxr-xr-x root/root 125040 2017-12-07 09:27 ./usr/bin/relion_reconstruct -rwxr-xr-x root/root 43112 2017-12-07 09:27 ./usr/bin/relion_refine -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_run_ctffind -rwxr-xr-x root/root 100464 2017-12-07 09:27 ./usr/bin/relion_stack_create -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_star_compare -rwxr-xr-x root/root 1055 2017-12-07 09:27 ./usr/bin/relion_star_datablock_ctfdat -rwxr-xr-x root/root 714 2017-12-07 09:27 ./usr/bin/relion_star_datablock_singlefiles -rwxr-xr-x root/root 767 2017-12-07 09:27 ./usr/bin/relion_star_datablock_stack -rwxr-xr-x root/root 675 2017-12-07 09:27 ./usr/bin/relion_star_loopheader -rwxr-xr-x root/root 1217 2017-12-07 09:27 ./usr/bin/relion_star_plottable -rwxr-xr-x root/root 1177 2017-12-07 09:27 ./usr/bin/relion_star_printtable -rwxr-xr-x root/root 43120 2017-12-07 09:27 ./usr/bin/relion_tiltpair_plot drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+gui/ -rw-r--r-- root/root 496 2014-12-02 13:41 ./usr/share/doc/relion-bin+gui/AUTHORS -rw-r--r-- root/root 719 2014-12-02 13:41 ./usr/share/doc/relion-bin+gui/README lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+gui/changelog.Debian.gz -> ../librelion+gui-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/relion-bin+gui/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+gui/examples/ -rw-r--r-- root/root 227 2017-12-07 09:27 ./usr/share/doc/relion-bin+gui/examples/relion_qsub.csh drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 74 2017-12-07 09:27 ./usr/share/lintian/overrides/relion-bin+gui relion-bin+mpi+gui_1.4+dfsg-3_s390x.deb --------------------------------------- new debian package, version 2.0. size 218228 bytes: control archive=1876 bytes. 1077 bytes, 22 lines control 2288 bytes, 35 lines md5sums Package: relion-bin+mpi+gui Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1486 Depends: libc6 (>= 2.4), libfltk1.3, libgcc1 (>= 1:3.0), libopenmpi2, librelion-1.4-1, libstdc++6 (>= 5.2), openmpi-gcc | openmpi-bin Conflicts: relion-bin, relion-bin+gui, relion-bin+mpi Section: science Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: parallel toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . relion-bin+mpi+gui provides the serial and parallel command-line tools as well as the graphical user interface. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/bin/ -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_autopick -rwxr-xr-x root/root 96360 2017-12-07 09:27 ./usr/bin/relion_autopick_mpi -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_display -rwxr-xr-x root/root 63600 2017-12-07 09:27 ./usr/bin/relion_find_tiltpairs -rwxr-xr-x root/root 129136 2017-12-07 09:27 ./usr/bin/relion_image_handler -rwxr-xr-x root/root 10336 2017-12-07 09:27 ./usr/bin/relion_maingui -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_manualpick -rwxr-xr-x root/root 88168 2017-12-07 09:27 ./usr/bin/relion_mask_create -rwxr-xr-x root/root 34920 2017-12-07 09:27 ./usr/bin/relion_particle_polish -rwxr-xr-x root/root 112744 2017-12-07 09:27 ./usr/bin/relion_particle_polish_mpi -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_particle_sort -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_particle_sort_mpi -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_postprocess -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_preprocess -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_preprocess_mpi -rwxr-xr-x root/root 108656 2017-12-07 09:27 ./usr/bin/relion_project -rwxr-xr-x root/root 125040 2017-12-07 09:27 ./usr/bin/relion_reconstruct -rwxr-xr-x root/root 43112 2017-12-07 09:27 ./usr/bin/relion_refine -rwxr-xr-x root/root 125032 2017-12-07 09:27 ./usr/bin/relion_refine_mpi -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_run_ctffind -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_run_ctffind_mpi -rwxr-xr-x root/root 100464 2017-12-07 09:27 ./usr/bin/relion_stack_create -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_star_compare -rwxr-xr-x root/root 1055 2017-12-07 09:27 ./usr/bin/relion_star_datablock_ctfdat -rwxr-xr-x root/root 714 2017-12-07 09:27 ./usr/bin/relion_star_datablock_singlefiles -rwxr-xr-x root/root 767 2017-12-07 09:27 ./usr/bin/relion_star_datablock_stack -rwxr-xr-x root/root 675 2017-12-07 09:27 ./usr/bin/relion_star_loopheader -rwxr-xr-x root/root 1217 2017-12-07 09:27 ./usr/bin/relion_star_plottable -rwxr-xr-x root/root 1177 2017-12-07 09:27 ./usr/bin/relion_star_printtable -rwxr-xr-x root/root 43120 2017-12-07 09:27 ./usr/bin/relion_tiltpair_plot drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi+gui/ -rw-r--r-- root/root 496 2014-12-02 13:41 ./usr/share/doc/relion-bin+mpi+gui/AUTHORS -rw-r--r-- root/root 719 2014-12-02 13:41 ./usr/share/doc/relion-bin+mpi+gui/README lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi+gui/changelog.Debian.gz -> ../librelion-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi+gui/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi+gui/examples/ -rw-r--r-- root/root 227 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi+gui/examples/relion_qsub.csh drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 82 2017-12-07 09:27 ./usr/share/lintian/overrides/relion-bin+mpi+gui relion-bin+mpi_1.4+dfsg-3_s390x.deb ----------------------------------- new debian package, version 2.0. size 220268 bytes: control archive=1744 bytes. 1042 bytes, 22 lines control 2006 bytes, 31 lines md5sums Package: relion-bin+mpi Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1455 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libopenmpi2, librelion+mpi-1.4-1, libstdc++6 (>= 5.2), openmpi-gcc | openmpi-bin Conflicts: relion-bin, relion-bin+gui, relion-bin+mpi+gui Section: science Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: parallel toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . relion-bin+mpi provides the serial and parallel command-line tools based on OpenMPI. drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/bin/ -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_autopick -rwxr-xr-x root/root 96360 2017-12-07 09:27 ./usr/bin/relion_autopick_mpi -rwxr-xr-x root/root 63600 2017-12-07 09:27 ./usr/bin/relion_find_tiltpairs -rwxr-xr-x root/root 129136 2017-12-07 09:27 ./usr/bin/relion_image_handler -rwxr-xr-x root/root 88168 2017-12-07 09:27 ./usr/bin/relion_mask_create -rwxr-xr-x root/root 34920 2017-12-07 09:27 ./usr/bin/relion_particle_polish -rwxr-xr-x root/root 112744 2017-12-07 09:27 ./usr/bin/relion_particle_polish_mpi -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_particle_sort -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_particle_sort_mpi -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_postprocess -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_preprocess -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_preprocess_mpi -rwxr-xr-x root/root 108656 2017-12-07 09:27 ./usr/bin/relion_project -rwxr-xr-x root/root 125040 2017-12-07 09:27 ./usr/bin/relion_reconstruct -rwxr-xr-x root/root 47208 2017-12-07 09:27 ./usr/bin/relion_refine -rwxr-xr-x root/root 125032 2017-12-07 09:27 ./usr/bin/relion_refine_mpi -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_run_ctffind -rwxr-xr-x root/root 92264 2017-12-07 09:27 ./usr/bin/relion_run_ctffind_mpi -rwxr-xr-x root/root 100464 2017-12-07 09:27 ./usr/bin/relion_stack_create -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_star_compare -rwxr-xr-x root/root 1055 2017-12-07 09:27 ./usr/bin/relion_star_datablock_ctfdat -rwxr-xr-x root/root 714 2017-12-07 09:27 ./usr/bin/relion_star_datablock_singlefiles -rwxr-xr-x root/root 767 2017-12-07 09:27 ./usr/bin/relion_star_datablock_stack -rwxr-xr-x root/root 675 2017-12-07 09:27 ./usr/bin/relion_star_loopheader -rwxr-xr-x root/root 1217 2017-12-07 09:27 ./usr/bin/relion_star_plottable -rwxr-xr-x root/root 1177 2017-12-07 09:27 ./usr/bin/relion_star_printtable -rwxr-xr-x root/root 43120 2017-12-07 09:27 ./usr/bin/relion_tiltpair_plot drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi/ -rw-r--r-- root/root 496 2014-12-02 13:41 ./usr/share/doc/relion-bin+mpi/AUTHORS -rw-r--r-- root/root 719 2014-12-02 13:41 ./usr/share/doc/relion-bin+mpi/README lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi/changelog.Debian.gz -> ../librelion+mpi-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/relion-bin+mpi/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 39 2017-12-07 09:27 ./usr/share/lintian/overrides/relion-bin+mpi relion-bin_1.4+dfsg-3_s390x.deb ------------------------------- new debian package, version 2.0. size 168168 bytes: control archive=1560 bytes. 952 bytes, 21 lines control 1603 bytes, 25 lines md5sums Package: relion-bin Source: relion Version: 1.4+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 849 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), librelion-1.4-1, libstdc++6 (>= 5.2) Conflicts: relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui Section: science Priority: optional Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description: toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions as well as a C++ API. . relion-bin provides the serial command-line tools drwxr-xr-x root/root 0 2017-12-07 09:27 ./ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/bin/ -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_autopick -rwxr-xr-x root/root 63600 2017-12-07 09:27 ./usr/bin/relion_find_tiltpairs -rwxr-xr-x root/root 129136 2017-12-07 09:27 ./usr/bin/relion_image_handler -rwxr-xr-x root/root 88168 2017-12-07 09:27 ./usr/bin/relion_mask_create -rwxr-xr-x root/root 34920 2017-12-07 09:27 ./usr/bin/relion_particle_polish -rwxr-xr-x root/root 14440 2017-12-07 09:27 ./usr/bin/relion_particle_sort -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_postprocess -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_preprocess -rwxr-xr-x root/root 108656 2017-12-07 09:27 ./usr/bin/relion_project -rwxr-xr-x root/root 125040 2017-12-07 09:27 ./usr/bin/relion_reconstruct -rwxr-xr-x root/root 43112 2017-12-07 09:27 ./usr/bin/relion_refine -rwxr-xr-x root/root 10344 2017-12-07 09:27 ./usr/bin/relion_run_ctffind -rwxr-xr-x root/root 100464 2017-12-07 09:27 ./usr/bin/relion_stack_create -rwxr-xr-x root/root 22632 2017-12-07 09:27 ./usr/bin/relion_star_compare -rwxr-xr-x root/root 1055 2017-12-07 09:27 ./usr/bin/relion_star_datablock_ctfdat -rwxr-xr-x root/root 714 2017-12-07 09:27 ./usr/bin/relion_star_datablock_singlefiles -rwxr-xr-x root/root 767 2017-12-07 09:27 ./usr/bin/relion_star_datablock_stack -rwxr-xr-x root/root 675 2017-12-07 09:27 ./usr/bin/relion_star_loopheader -rwxr-xr-x root/root 1217 2017-12-07 09:27 ./usr/bin/relion_star_plottable -rwxr-xr-x root/root 1177 2017-12-07 09:27 ./usr/bin/relion_star_printtable -rwxr-xr-x root/root 43120 2017-12-07 09:27 ./usr/bin/relion_tiltpair_plot drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin/ -rw-r--r-- root/root 496 2014-12-02 13:41 ./usr/share/doc/relion-bin/AUTHORS -rw-r--r-- root/root 719 2014-12-02 13:41 ./usr/share/doc/relion-bin/README lrwxrwxrwx root/root 0 2017-12-07 09:27 ./usr/share/doc/relion-bin/changelog.Debian.gz -> ../librelion-1.4-1/changelog.Debian.gz -rw-r--r-- root/root 1930 2017-12-07 09:27 ./usr/share/doc/relion-bin/copyright drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-12-07 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 35 2017-12-07 09:27 ./usr/share/lintian/overrides/relion-bin +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 737276 Build-Time: 388 Distribution: bionic-proposed Host Architecture: s390x Install-Time: 14 Job: relion_1.4+dfsg-3.dsc Machine Architecture: s390x Package: relion Package-Time: 403 Source-Version: 1.4+dfsg-3 Space: 737276 Status: successful Version: 1.4+dfsg-3 -------------------------------------------------------------------------------- Finished at 20171207-1714 Build needed 00:06:43, 737276k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 Scanning for processes to kill in build PACKAGEBUILD-13828740 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 Stopping target for build PACKAGEBUILD-13828740 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13828740 Removing build PACKAGEBUILD-13828740