https://launchpad.net/ubuntu/+source/readseq/1-14build1/+build/27952265 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-amd64-056 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 x86_64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 22 Mar 16:57:22 ntpdate[1846]: adjust time server 10.211.37.1 offset -0.002575 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27952265 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-27952265 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27952265 Starting target for build PACKAGEBUILD-27952265 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27952265 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27952265 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27952265 Updating target for build PACKAGEBUILD-27952265 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1436 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [518 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.3 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6039 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [239 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4250 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1553 kB] Fetched 30.6 MB in 4s (8617 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libnettle8* libnpth0* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages have been kept back: apt apt-utils optipng The following packages will be upgraded: base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblsan0 liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 157 upgraded, 20 newly installed, 11 to remove and 3 not upgraded. Need to get 117 MB of archives. After this operation, 78.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnsl-dev amd64 1.3.0-3build2 [70.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1 [193 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnss-nisplus amd64 1.3-5 [22.3 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1 [82.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgssapi-krb5-2 amd64 1.20.1-5.1ubuntu1 [142 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkrb5-3 amd64 1.20.1-5.1ubuntu1 [347 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libk5crypto3 amd64 1.20.1-5.1ubuntu1 [81.7 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkrb5support0 amd64 1.20.1-5.1ubuntu1 [33.5 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libacl1 amd64 2.3.2-1 [16.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu2 [49.4 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libaudit-common all 1:3.1.2-2.1 [5674 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcap-ng0 amd64 0.8.4-2build1 [15.1 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libaudit1 amd64 1:3.1.2-2.1 [46.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libblkid1 amd64 2.39.3-9ubuntu2 [122 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libcap2 amd64 1:2.66-5ubuntu1 [29.9 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt1 amd64 1:4.4.36-4 [95.3 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build1 [70.0 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgcrypt20 amd64 1.10.3-2 [532 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma5 amd64 5.6.0-0.2 [157 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libkmod2 amd64 31+20240202-2ubuntu4 [51.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu1 [228 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libselinux1 amd64 3.5-2ubuntu1 [79.5 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmount1 amd64 2.39.3-9ubuntu2 [134 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6 [738 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgdbm6t64 amd64 1.23-5.1 [34.4 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgdbm-compat4t64 amd64 1.23-5.1 [6700 B] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libperl5.38t64 amd64 5.38.2-3.2 [4871 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl amd64 5.38.2-3.2 [231 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-base amd64 5.38.2-3.2 [1823 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu3 [15.7 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtext-iconv-perl amd64 1.7-8build2 [13.5 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtext-charwidth-perl amd64 0.04-11build2 [9322 B] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 openssl amd64 3.0.13-0ubuntu2 [1002 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 255.4-1ubuntu5 [2067 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu2 [266 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3t64 amd64 3.0.13-0ubuntu2 [1936 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 255.4-1ubuntu5 [103 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 255.4-1ubuntu5 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 255.4-1ubuntu5 [3470 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 255.4-1ubuntu5 [428 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu3 [51.9 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-modules amd64 1.5.3-5ubuntu3 [279 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 bzip2 amd64 1.0.8-5ubuntu1 [34.6 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-1.0 amd64 1.0.8-5ubuntu1 [34.4 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu1 [62.7 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86 [205 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86 [124 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam0g amd64 1.5.3-5ubuntu3 [67.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.5-1ubuntu2 [50.3 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 255.4-1ubuntu5 [174 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu2 [139 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuuid1 amd64 2.39.3-9ubuntu2 [35.0 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfdisk1 amd64 2.39.3-9ubuntu2 [146 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 mount amd64 2.39.3-9ubuntu2 [118 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu2 [22.7 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3 [9386 B] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnsl2 amd64 1.3.0-3build2 [41.3 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 linux-libc-dev amd64 6.8.0-20.20 [1597 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-14-base amd64 14-20240315-1ubuntu1 [47.0 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-s1 amd64 14-20240315-1ubuntu1 [78.1 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu7 [74.2 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu2 [794 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdutils amd64 1:2.39.3-9ubuntu2 [94.9 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 coreutils amd64 9.4-3ubuntu3 [1411 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu1 [299 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30 amd64 3.8.3-1ubuntu1 [996 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnettle8t64 amd64 3.9.1-2.2 [181 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++6 amd64 14-20240315-1ubuntu1 [795 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0t64 amd64 2.7.13ubuntu1 [985 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.35+dfsg-3 [253 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg amd64 1.22.6ubuntu4 [1283 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 dash amd64 0.5.12-6ubuntu4 [89.8 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-4 [176 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 gzip amd64 1.12-1ubuntu2 [98.8 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 hostname amd64 3.23+nmu2ubuntu1 [11.0 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-4ubuntu1 [201 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu1 [188 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 sed amd64 4.9-2 [204 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 util-linux amd64 2.39.3-9ubuntu2 [1127 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdebconfclient0 amd64 0.271ubuntu2 [11.3 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3 [51.2 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-6ubuntu2 [34.1 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu2 [22.4 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu2 [221 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu2 [601 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpg amd64 2.4.4-2ubuntu15 [565 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libreadline8t64 amd64 8.2-3.1 [153 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpgconf amd64 2.4.4-2ubuntu15 [103 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpg-agent amd64 2.4.4-2ubuntu15 [227 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libnpth0t64 amd64 1.6-3.1 [8316 B] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 readline-common all 8.2-3.1 [56.4 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu1 [148 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu1 [108 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu2 [64.4 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 uuid-runtime amd64 2.39.3-9ubuntu2 [33.0 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libattr1 amd64 1:2.5.2-1 [11.4 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libmd0 amd64 1.1.0-2 [27.1 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage-common all 3.5-1build4 [10.1 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage2 amd64 3.5-1build4 [93.1 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu1 [844 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gpgv amd64 2.4.4-2ubuntu15 [157 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.6-1 [24.7 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.7-2 [66.0 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-13 amd64 13.2.0-19ubuntu1 [14.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13 amd64 13.2.0-19ubuntu1 [477 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-13 amd64 13.2.0-19ubuntu1 [1032 B] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-19ubuntu1 [11.2 MB] Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcc1-0 amd64 14-20240315-1ubuntu1 [47.7 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgprofng0 amd64 2.42-4ubuntu1 [851 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf0 amd64 2.42-4ubuntu1 [94.6 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu1 [97.1 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsframe1 amd64 2.42-4ubuntu1 [14.8 kB] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu1 [2470 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbinutils amd64 2.42-4ubuntu1 [573 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils amd64 2.42-4ubuntu1 [18.0 kB] Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-common amd64 2.42-4ubuntu1 [239 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-19ubuntu1 [2342 kB] Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgomp1 amd64 14-20240315-1ubuntu1 [147 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libitm1 amd64 14-20240315-1ubuntu1 [28.9 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libatomic1 amd64 14-20240315-1ubuntu1 [10.4 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libasan8 amd64 14-20240315-1ubuntu1 [3026 kB] Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblsan0 amd64 14-20240315-1ubuntu1 [1310 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-13-dev amd64 13.2.0-19ubuntu1 [2687 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtsan2 amd64 14-20240315-1ubuntu1 [2732 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libubsan1 amd64 14-20240315-1ubuntu1 [1172 kB] Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libhwasan0 amd64 14-20240315-1ubuntu1 [1629 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libquadmath0 amd64 14-20240315-1ubuntu1 [155 kB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-19ubuntu1 [21.8 MB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-19ubuntu1 [12.5 MB] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13-base amd64 13.2.0-19ubuntu1 [47.7 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu1 [59.2 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu2 [17.0 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20240123-1 [127 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-4ubuntu1 [708 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libip4tc2 amd64 1.8.10-3ubuntu1 [23.3 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu1 [701 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 tzdata all 2024a-1ubuntu1 [273 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bsdextrautils amd64 2.39.3-9ubuntu2 [73.6 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16 amd64 1.6.43-1 [186 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 psmisc amd64 23.7-1 [179 kB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 xz-utils amd64 5.6.0-0.2 [272 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] Get:171 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg-dev all 1.22.6ubuntu4 [1074 kB] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdpkg-perl all 1.22.6ubuntu4 [268 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.33-1 [32.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.33-1 [67.2 kB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 pinentry-curses amd64 1.2.1-3ubuntu4 [35.2 kB] Preconfiguring packages ... 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Setting up libc6-dev:amd64 (2.39-0ubuntu6) ... Setting up gpg (2.4.4-2ubuntu15) ... Setting up libstdc++-13-dev:amd64 (13.2.0-19ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.42-4ubuntu1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg-agent (2.4.4-2ubuntu15) ... Setting up cpp-13 (13.2.0-19ubuntu1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-19ubuntu1) ... Setting up binutils (2.42-4ubuntu1) ... Setting up dpkg-dev (1.22.6ubuntu4) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.1) ... Setting up gcc-13 (13.2.0-19ubuntu1) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:amd64 (1.3.0-3build2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-19ubuntu1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libnss-nisplus:amd64 (1.3-5) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:amd64 (1.3.0-3build2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-19ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu6) ... Processing triggers for debianutils (5.17) ... (Reading database ... 15762 files and directories currently installed.) Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27952265 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-27952265 --arch=amd64 --dist=noble-proposed --nolog -A readseq_1-14build1.dsc Initiating build PACKAGEBUILD-27952265 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-amd64-056.buildd +==============================================================================+ | readseq 1-14build1 (amd64) Fri, 22 Mar 2024 16:57:59 +0000 | +==============================================================================+ Package: readseq Version: 1-14build1 Source Version: 1-14build1 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27952265/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-ycHyee/resolver-4xUtdH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- readseq_1-14build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/readseq-ycHyee/readseq-1' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-ycHyee' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [373 B] Get:5 copy:/<>/apt_archive ./ Packages [457 B] Fetched 1787 B in 0s (174 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64 libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc libmagic1t64 libncbi6-dev libncbi6t64 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db ncbi-data po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl ncbi-tools-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1t64 libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc libmagic1t64 libncbi6-dev libncbi6t64 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db ncbi-data po-debconf sbuild-build-depends-main-dummy 0 upgraded, 34 newly installed, 0 to remove and 3 not upgraded. Need to get 33.5 MB of archives. After this operation, 134 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [674 B] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libicu74 amd64 74.2-1ubuntu1 [10.9 MB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu2 [762 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmagic-mgc amd64 1:5.45-3 [307 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmagic1t64 amd64 1:5.45-3 [87.2 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 file amd64 1:5.45-3 [22.0 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-14ubuntu1 [38.3 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.8-1 [75.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 groff-base amd64 1.23.0-3build1 [1020 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 man-db amd64 2.12.0-3build4 [1230 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4 [243 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14ubuntu1 [422 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7 [166 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libelf1t64 amd64 0.190-1.1build2 [57.5 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdw1t64 amd64 0.190-1.1build2 [261 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dwz amd64 0.15-1build5 [115 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14ubuntu1 [864 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 debhelper all 13.14.1ubuntu5 [869 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 ncbi-data all 6.1.20170106+dfsg2-1 [4285 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libncbi6t64 amd64 6.1.20170106+dfsg2-1 [4360 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libncbi6-dev amd64 6.1.20170106+dfsg2-1 [5975 kB] Preconfiguring packages ... Fetched 33.5 MB in 2s (18.9 MB/s) Selecting previously unselected package libicu74:amd64. (Reading database ... 15762 files and directories currently installed.) Preparing to unpack .../00-libicu74_74.2-1ubuntu1_amd64.deb ... Unpacking libicu74:amd64 (74.2-1ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../01-libxml2_2.9.14+dfsg-1.3ubuntu2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. 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Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14ubuntu1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.190-1.1build2) ... Setting up libdw1t64:amd64 (0.190-1.1build2) ... Setting up libncbi6t64:amd64 (6.1.20170106+dfsg2-1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libicu74:amd64 (74.2-1ubuntu1) ... Setting up dwz (0.15-1build5) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up debugedit (1:5.0-5) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3ubuntu2) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libncbi6-dev:amd64 (6.1.20170106+dfsg2-1) ... Setting up gettext (0.21-14ubuntu1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3build4) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up debhelper (13.14.1ubuntu5) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-0ubuntu6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:55:07 UTC 2024 amd64 (x86_64) Toolchain package versions: binutils_2.42-4ubuntu1 dpkg-dev_1.22.6ubuntu4 g++-13_13.2.0-19ubuntu1 gcc-13_13.2.0-19ubuntu1 libc6-dev_2.39-0ubuntu6 libstdc++-13-dev_13.2.0-19ubuntu1 libstdc++6_14-20240315-1ubuntu1 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 apt-utils_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu7 base-passwd_3.6.3 bash_5.2.21-2ubuntu2 bash-completion_1:2.11-8 binutils_2.42-4ubuntu1 binutils-common_2.42-4ubuntu1 binutils-x86-64-linux-gnu_2.42-4ubuntu1 bsdextrautils_2.39.3-9ubuntu2 bsdutils_1:2.39.3-9ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5ubuntu1 ca-certificates_20240203 coreutils_9.4-3ubuntu3 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-19ubuntu1 cpp-13-x86-64-linux-gnu_13.2.0-19ubuntu1 cpp-x86-64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu4 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu4 dpkg-dev_1.22.6ubuntu4 dwz_0.15-1build5 e2fsprogs_1.47.0-2.4~exp1ubuntu2 fakeroot_1.33-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-19ubuntu1 g++-13-x86-64-linux-gnu_13.2.0-19ubuntu1 g++-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-19ubuntu1 gcc-13-base_13.2.0-19ubuntu1 gcc-13-x86-64-linux-gnu_13.2.0-19ubuntu1 gcc-14-base_14-20240315-1ubuntu1 gcc-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu15 gpg-agent_2.4.4-2ubuntu15 gpgconf_2.4.4-2ubuntu15 gpgv_2.4.4-2ubuntu15 grep_3.11-4 groff-base_1.23.0-3build1 gzip_1.12-1ubuntu2 hostname_3.23+nmu2ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5.1ubuntu1 libacl1_2.3.2-1 libapparmor1_4.0.0-beta3-0ubuntu2 libapt-pkg6.0t64_2.7.13ubuntu1 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240315-1ubuntu1 libassuan0_2.5.6-1 libatomic1_14-20240315-1ubuntu1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4ubuntu1 libblkid1_2.39.3-9ubuntu2 libbz2-1.0_1.0.8-5ubuntu1 libc-bin_2.39-0ubuntu6 libc-dev-bin_2.39-0ubuntu6 libc6_2.39-0ubuntu6 libc6-dev_2.39-0ubuntu6 libcap-ng0_0.8.4-2build1 libcap2_1:2.66-5ubuntu1 libcc1-0_14-20240315-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.7.0-1ubuntu2 libctf-nobfd0_2.42-4ubuntu1 libctf0_2.42-4ubuntu1 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271ubuntu2 libdebhelper-perl_13.14.1ubuntu5 libdevmapper1.02.1_2:1.02.185-3ubuntu2 libdpkg-perl_1.22.6ubuntu4 libdw1t64_0.190-1.1build2 libelf1t64_0.190-1.1build2 libext2fs2t64_1.47.0-2.4~exp1ubuntu2 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu2 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-19ubuntu1 libgcc-s1_14-20240315-1ubuntu1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1 libgdbm6t64_1.23-5.1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.3-1ubuntu1 libgomp1_14-20240315-1ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgprofng0_2.42-4ubuntu1 libgssapi-krb5-2_1.20.1-5.1ubuntu1 libhogweed6_3.9.1-2 libhwasan0_14-20240315-1ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.7-2 libip4tc2_1.8.10-3ubuntu1 libisl23_0.26-3 libitm1_14-20240315-1ubuntu1 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-5.1ubuntu1 libkeyutils1_1.6.3-3 libkmod2_31+20240202-2ubuntu4 libkrb5-3_1.20.1-5.1ubuntu1 libkrb5support0_1.20.1-5.1ubuntu1 liblocale-gettext-perl_1.07-6ubuntu3 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_14-20240315-1ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.6.0-0.2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.39.3-9ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncbi6-dev_6.1.20170106+dfsg2-1 libncbi6t64_6.1.20170106+dfsg2-1 libncursesw6_6.4+20240113-1ubuntu1 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libnsl-dev_1.3.0-3build2 libnsl2_1.3.0-3build2 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-5 libp11-kit0_0.25.3-4ubuntu1 libpam-modules_1.5.3-5ubuntu3 libpam-modules-bin_1.5.3-5ubuntu3 libpam-runtime_1.5.3-5ubuntu3 libpam0g_1.5.3-5ubuntu3 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2 libpipeline1_1.5.7-1 libpng16-16_1.6.43-1 libproc2-0_2:4.0.4-4ubuntu1 libquadmath0_14-20240315-1ubuntu1 libreadline8t64_8.2-3.1 libseccomp2_2.5.5-1ubuntu2 libselinux1_3.5-2ubuntu1 libsemanage-common_3.5-1build4 libsemanage2_3.5-1build4 libsepol2_3.5-2 libsframe1_2.42-4ubuntu1 libsmartcols1_2.39.3-9ubuntu2 libsqlite3-0_3.45.1-1ubuntu1 libss2_1.47.0-2.4~exp1ubuntu2 libssl3t64_3.0.13-0ubuntu2 libstdc++-13-dev_13.2.0-19ubuntu1 libstdc++6_14-20240315-1ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu5 libsystemd0_255.4-1ubuntu5 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11build2 libtext-iconv-perl_1.7-8build2 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu1 libtirpc-common_1.3.4+ds-1.1 libtirpc-dev_1.3.4+ds-1.1 libtirpc3t64_1.3.4+ds-1.1 libtool_2.4.7-7 libtsan2_14-20240315-1ubuntu1 libubsan1_14-20240315-1ubuntu1 libuchardet0_0.0.8-1 libudev1_255.4-1ubuntu5 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-9ubuntu2 libxml2_2.9.14+dfsg-1.3ubuntu2 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.0-20.20 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-4ubuntu1 logsave_1.47.0-2.4~exp1ubuntu2 lto-disabled-list_47 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-3build4 mawk_1.3.4.20240123-1 mount_2.39.3-9ubuntu2 ncbi-data_6.1.20170106+dfsg2-1 ncurses-base_6.4+20240113-1ubuntu1 ncurses-bin_6.4+20240113-1ubuntu1 openssl_3.0.13-0ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-4ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3.2 perl-base_5.38.2-3.2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2 pinentry-curses_1.2.1-3ubuntu4 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu1 psmisc_23.7-1 readline-common_8.2-3.1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 systemd_255.4-1ubuntu5 systemd-dev_255.4-1ubuntu5 systemd-sysv_255.4-1ubuntu5 sysvinit-utils_3.08-6ubuntu2 tar_1.35+dfsg-3 tzdata_2024a-1ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu2 uuid-runtime_2.39.3-9ubuntu2 xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3.1ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: readseq Binary: readseq Architecture: any Version: 1-14build1 Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/readseq Vcs-Git: https://salsa.debian.org/med-team/readseq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-tools-dev Package-List: readseq deb science optional arch=any Checksums-Sha1: 474839186eec28f650ac89a33829673fa40c3bbb 54557 readseq_1.orig.tar.gz 052f8535241bed284aa5f4d882fcdfdeb9e73228 17636 readseq_1-14build1.debian.tar.xz Checksums-Sha256: b704d7a12c5d834390f3ed4233f1409c5f1ed53b0b9accf5ab632a513de1183c 54557 readseq_1.orig.tar.gz ed8cde053b3095a554dcd23e58e2e94ea24bc839e900cd2e9b9778d0360a43b8 17636 readseq_1-14build1.debian.tar.xz Files: 3973daff73375953369c31c5c1661699 54557 readseq_1.orig.tar.gz eee51fbcc907d67202aec44ee8091494 17636 readseq_1-14build1.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAxFiEET7WIqEwt3nmnTHeHb6RY3R2wP3EFAmX9t5wTHGp1bGlhbmtA dWJ1bnR1LmNvbQAKCRBvpFjdHbA/cak1D/49LU0rN0lU7vJYRkh4KHxn0aVVkWAX KrC3YKDWSrnL2ZQcB7aBaQrQQOZHHRmLNKmsLwjJFSnh9cNk4d9QqROeAJGSGkFt Zbp9J2RkzrxiJxVEyJzjW/41X2CG68zJiBtph+5jl7bglcsqnnWWB8UPMcmBuaBg wZO1hpEDxdVsChX+2oVnNRC3y1iz5fW3HVzmd942ApqwNdWJM3i09pZx9ghftLQa J8kPMNjG9Zfh2t0i4nYzQ+nsgoVs9HsbxjaEgMyfJb2kKM6VVI5GB22JXNht4HnX g+gXoVfMe6Wqc8VNSEsFE9UzzDGep0FCWfoUrHO5hbeu/yhfXmHpe/zBvQlN4QIU sKFHYJ/+CjyYemmz97KHrqd3QUIxqqPge1fdjplY9JWAxB2Ird2C1X+26Rf0yKFe Hb9cF3u5KLbCm6u6Cdq5gyo4FGeOkgQow3R+tlkB07Rnm6waJNGGRKaacjd4XSE4 5pGC6en429Skbz4hH46fqLAx5ke0TYqgEWGmfGULtBAVNJr/uxlUwJU7/I9bcNi7 T3VJaUUVcDxfhYIQfKo0IE4pWyE18rjON/bZBacD1Ai7ipDvfUNUOf6rrizRAQau FexCNsSAsUB8otjkZ/9UaVsHjaRwun1dNd7Ve6Yf7iQgHbzT3jylWmVb5y4DIUIj PmUX9+tPXbq6BQ== =XLc6 -----END PGP SIGNATURE----- gpgv: Signature made Fri Mar 22 16:53:48 2024 UTC gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 gpgv: issuer "juliank@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./readseq_1-14build1.dsc: no acceptable signature found dpkg-source: info: extracting readseq in /<> dpkg-source: info: unpacking readseq_1.orig.tar.gz dpkg-source: info: unpacking readseq_1-14build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20-Formats.patch dpkg-source: info: applying 20-Makefile.patch dpkg-source: info: applying 30-arb-code-patches.patch dpkg-source: info: applying 552830.patch dpkg-source: info: applying gcc-4.6_format-security.patch dpkg-source: info: applying enable_tests.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying buffer_overflow.patch dpkg-source: info: applying fix_tests.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27952265 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27952265 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27952265 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package readseq dpkg-buildpackage: info: source version 1-14build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o core test.* readseq make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f readseq make[1]: Leaving directory '/<>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' Compiling readseq with NCBI toolkit support and ARB patches gcc -o readseq -I/usr/include/ncbi -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/readseq-1-14build1 -g -O2 -DNCBI -I/usr/include/ncbi -DARB readseq.c ureadseq.c ureadasn.c -lncbi -lncbiobj -lncbicdr -lncbiacc -lncbitool -lncbimmdb -lncbiid1 -lnetcli -lm -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now readseq.c: In function ‘formatstr’: readseq.c:267:41: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 267 | case kASNseqset : return formats[kASN1-1]; | ~~~~~~~^~~~~~~~~ readseq.c:269:45: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 269 | case kPhylipSequential: return formats[kPhylip-1]; | ~~~~~~~^~~~~~~~~~~ readseq.c:273:22: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 273 | else return formats[format-1]; | ~~~~~~~^~~~~~~~~~ readseq.c: In function ‘Nlm_Main’: readseq.c:801:5: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] 801 | gets(oname= onamestore); | ^~~~ | fgets readseq.c:936:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 936 | sprintf( stemp,"%s_%d", oname, whichSeq); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:938:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 938 | fprintf( stderr,"Writing sequence %d to file %s\n", whichSeq, stemp); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:980:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long int readseq.c:980:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~ | | | long int readseq.c:980:65: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | unsigned int | %lX 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long unsigned int readseq.c:998:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:998:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:999:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:999:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1117:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~ | | | long int readseq.c:1117:55: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long unsigned int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~~~ | | | long unsigned int readseq.c:1133:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1133 | if (phylvers >= 4) fprintf(foo," %d %d\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1134:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1134 | else fprintf(foo," %d %d YF\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1158:49: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1158 | fprintf(foo," dimensions ntax=%d nchar=%d;\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c: In function ‘chooseFormat’: readseq.c:429:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 429 | fgets(sform, 127, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~ readseq.c: In function ‘Nlm_Main’: readseq.c:783:5: warning: ignoring return value of ‘tmpnam’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 783 | tmpnam(tempname); | ^~~~~~~~~~~~~~~~ readseq.c:937:13: warning: ignoring return value of ‘freopen’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 937 | freopen( stemp, "w", fout); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ureadseq.c: In function ‘seqFileFormatFp’: ureadseq.c:1535:19: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c:1535:21: warning: format ‘%d’ expects argument of type ‘int *’, but argument 4 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c: In function ‘writeSeq’: ureadseq.c:1784:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1784 | sprintf(numform, "%d", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1813:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1813 | fprintf(outf,"LOCUS %s %d bp\n", idword, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:48: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1828:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1828:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1838:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1838 | for (j= 5; j<=width; j += 5) fprintf(outf,"%10d",j); | ~~~^ ~ | | | | | long int | int | %10ld ureadseq.c:1848:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1848:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1857:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1857:41: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1858:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1858 | fprintf(outf,"SQ %d BP\n", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:58: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~~~ | | | | int long unsigned int | %ld ureadseq.c:1878:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1878:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1884:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1884:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1915:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1915 | fprintf(outf," repr raw, mol %s, length %d, topology linear,\n", cp, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1937:41: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1937:53: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1954:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1954:54: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1960:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %6ld 1961 | idword, seqlen, checksum); | ~~~~~~ | | | long int ureadseq.c:1960:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %5ld 1961 | idword, seqlen, checksum); | ~~~~~~~~ | | | long unsigned int ureadseq.c:1972:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1972:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1979:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1979 | fprintf(outf,"%4d %-60s\n",seqlen,seqname); | ~~^ ~~~~~~ | | | | int long int | %4ld ureadseq.c:2002:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:2002:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:2043:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 2043 | if (numline==1) fprintf(outf,"%-9d ",i+1); | ~~~^ ~~~ | | | | int long int | %-9ld ureadseq.c: In function ‘readPAUPinterleaved’: ureadseq.c:213:22: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 246 and 251 [-Wformat-overflow=] 213 | sprintf(si, " %d) %s\n", V->nseq, s); | ^~ In file included from /usr/include/stdio.h:980, from ureadseq.c:20: In function ‘sprintf’, inlined from ‘addinfo’ at ureadseq.c:213:3, inlined from ‘readPAUPinterleaved’ at ureadseq.c:813:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 267 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ureadseq.c: In function ‘writeSeq’: ureadseq.c:2007:45: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 2 and 7 [-Wformat-overflow=] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~ ureadseq.c:2007:39: note: directive argument in the range [-32768, 32767] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘writeSeq’ at ureadseq.c:2007:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 17 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ureadasn.c: In function ‘listASNSeqs’: ureadasn.c:189:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 189 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ In file included from /usr/include/ncbi/ncbi.h:57, from ureadasn.c:13: /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c: In function ‘readASNSeq’: ureadasn.c:261:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 261 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c: In function ‘listASNSeqs’: ureadasn.c:190:31: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | for (i=0; ifp); /* this may mess up asn routines... */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ureadasn.c: In function ‘readASNSeq’: ureadasn.c:262:31: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 262 | for (i=0; ifp); /* this may mess up asn routines... */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from ureadasn.c:8: In function ‘fgets’, inlined from ‘readASNSeq’ at ureadasn.c:262:31: /usr/include/x86_64-linux-gnu/bits/stdio2.h:202:12: warning: call to ‘*__fgets_chk’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 202 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘readASNSeq’ at ureadasn.c:262:31, inlined from ‘Nlm_Main’ at readseq.c:958:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:202:12: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 202 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^ /usr/bin/ld: /tmp/ccEHeY1j.ltrans0.ltrans.o: in function `Nlm_Main': /usr/src/readseq-1-14build1/readseq.c:801:(.text+0x5a9f): warning: the `gets' function is dangerous and should not be used. /usr/bin/ld: /usr/src/readseq-1-14build1/readseq.c:783:(.text+0x5d7f): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh_auto_test make -j4 test make[1]: Entering directory '/<>' Test for general read/write of all chars: ./readseq -p alphabet.std -otest.alpha diff test.alpha alphabet.std Test for valid format conversions: ./readseq -v -p -f=ig nucleic.std -otest.ig Sequence 1, length= 228, checksum= 1B5655D0, format= 20. Vienna, id= nucleic/amino test ./readseq -v -p -f=gb test.ig -otest.gb Sequence 1, length= 228, checksum= 1B5655D0, format= 1. IG/Stanford, id= nucleic/amino ./readseq -v -p -f=nbrf test.gb -otest.nbrf Sequence 1, length= 228, checksum= 1B5655D0, format= 2. GenBank/GB, id= nucleic/amino 228 bp ./readseq -v -p -f=embl test.nbrf -otest.embl Sequence 1, length= 228, checksum= 1B5655D0, format= 3. NBRF, id= nucleic/amino ./readseq -v -p -f=gcg test.embl -otest.gcg Sequence 1, length= 228, checksum= 1B5655D0, format= 4. EMBL, id= nucleic/amino ./readseq -v -p -f=strider test.gcg -otest.strider Sequence 1, length= 228, checksum= 1B5655D0, format= 5. GCG, id= nucleic/amino ./readseq -v -p -f=fitch test.strider -otest.fitch Sequence 1, length= 228, checksum= 1B5655D0, format= 6. DNAStrider, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=fasta test.fitch -otest.fasta Sequence 1, length= 228, checksum= 1B5655D0, format= 7. Fitch, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=pir test.fasta -otest.pir Sequence 1, length= 228, checksum= 1B5655D0, format= 8. Pearson/Fasta, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=ig test.pir -otest.ig-b Sequence 1, length= 228, checksum= 1B5655D0, format= 14. PIR/CODATA, id= nucleic/amino, diff test.ig test.ig-b 1,2c1,2 < ;nucleic/amino test, 228 bases, 1B5655D0 checksum. < nucleic/amino --- > ;nucleic/amino, , 228 bases, 1B5655D0 checksum. > nucleic/amino, make[1]: [Makefile:70: test] Error 1 (ignored) Test for multiple-sequence format conversions: ./readseq -p -f=ig multi.std -otest.m-ig ./readseq -p -f=gb test.m-ig -otest.m-gb ./readseq -p -f=nbrf test.m-gb -otest.m-nbrf ./readseq -p -f=embl test.m-nbrf -otest.m-embl ./readseq -p -f=fasta test.m-embl -otest.m-fasta ./readseq -p -f=pir test.m-fasta -otest.m-pir ./readseq -p -f=msf test.m-pir -otest.m-msf ./readseq -p -f=paup test.m-msf -otest.m-paup ./readseq -p -f=ig test.m-paup -otest.m-ig-b diff test.m-ig test.m-ig-b 1,2c1,2 < ;acarr58sst , 183 bases, 64754A4D checksum. < acarr58sst --- > ;acarr58ss, 183 bases, 64754A4D checksum. > acarr58ss 7c7 < ;amgrrbst , 183 bases, C886D2FB checksum. --- > ;amgrrbst, 183 bases, C886D2FB checksum. 13c13 < ;bmorrbst , 183 bases, 3E9C23D6 checksum. --- > ;bmorrbst, 183 bases, 3E9C23D6 checksum. 19c19 < ;crerrbst , 183 bases, AC88A337 checksum. --- > ;crerrbst, 183 bases, AC88A337 checksum. 25,26c25,26 < ;ddirr58sst , 183 bases, 1E3D23B8 checksum. < ddirr58sst --- > ;ddirr58ss, 183 bases, 1E3D23B8 checksum. > ddirr58ss make[1]: [Makefile:82: test] Error 1 (ignored) Expect differences in the header lines due to different format headers. If any sequence lines differ, or if the checksums differ, there is a problem. ---------------------- To clean up test files, command me: make clean make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/readseq/ make -j4 install DESTDIR=/<>/debian/readseq AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' install readseq /<>/debian/readseq/usr/bin install *.std /<>/debian/readseq/usr/share/doc/readseq/tests install Makefile /<>/debian/readseq/usr/share/doc/readseq/tests make[1]: Leaving directory '/<>' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a c1d639ea2ea0a6eacd9fa0daf72e8467ab97896c dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing readseq (in debian/readseq); do_strip: , oemstrip: pkgstriptranslations: processing readseq-dbgsym (in debian/.debhelper/readseq/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/readseq/DEBIAN/control, package readseq, directory debian/readseq pkgstripfiles: Running PNG optimization (using 4 cpus) for package readseq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'readseq' in '../readseq_1-14build1_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/readseq/dbgsym-root/DEBIAN/control, package readseq-dbgsym, directory debian/.debhelper/readseq/dbgsym-root dpkg-deb: building package 'readseq-dbgsym' in 'debian/.debhelper/scratch-space/build-readseq/readseq-dbgsym_1-14build1_amd64.deb'. Renaming readseq-dbgsym_1-14build1_amd64.deb to readseq-dbgsym_1-14build1_amd64.ddeb dpkg-genbuildinfo --build=binary -O../readseq_1-14build1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../readseq_1-14build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-22T16:58:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ readseq_1-14build1_amd64.changes: --------------------------------- Format: 1.8 Date: Fri, 22 Mar 2024 17:52:59 +0100 Source: readseq Binary: readseq Built-For-Profiles: noudeb Architecture: amd64 Version: 1-14build1 Distribution: noble-proposed Urgency: high Maintainer: Launchpad Build Daemon Changed-By: Julian Andres Klode Description: readseq - Conversion between sequence formats Changes: readseq (1-14build1) noble; urgency=high . * No change rebuild against libncbi6t64. 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/<>/readseq_1-14build1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: readseq Binary: readseq readseq-dbgsym Architecture: amd64 Version: 1-14build1 Checksums-Md5: de706856090f791f4630adf8704139f2 70358 readseq-dbgsym_1-14build1_amd64.ddeb 8812aac075a1ca77e1f4b53434a716db 55280 readseq_1-14build1_amd64.deb Checksums-Sha1: 007b860f659fd910b5f00ff7b5bb77f48dca3926 70358 readseq-dbgsym_1-14build1_amd64.ddeb 31dec0347e1f47bb0f4cfcc026156f5c1777dbce 55280 readseq_1-14build1_amd64.deb Checksums-Sha256: b1fc0fa031e53bf7c024903d49dac46f3a47d8527e9257e41bdb4b07c3e2840a 70358 readseq-dbgsym_1-14build1_amd64.ddeb 81bcfff22df2b8c810824bf430faa24041a8857277d8f7da56127094960b0cc8 55280 readseq_1-14build1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Fri, 22 Mar 2024 16:58:13 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu7), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu2), binutils (= 2.42-4ubuntu1), binutils-common (= 2.42-4ubuntu1), binutils-x86-64-linux-gnu (= 2.42-4ubuntu1), bsdextrautils (= 2.39.3-9ubuntu2), bsdutils (= 1:2.39.3-9ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5ubuntu1), coreutils (= 9.4-3ubuntu3), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-19ubuntu1), cpp-13-x86-64-linux-gnu (= 13.2.0-19ubuntu1), cpp-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu4), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6ubuntu4), dpkg-dev (= 1.22.6ubuntu4), dwz (= 0.15-1build5), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-19ubuntu1), g++-13-x86-64-linux-gnu (= 13.2.0-19ubuntu1), g++-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-19ubuntu1), gcc-13-base (= 13.2.0-19ubuntu1), gcc-13-x86-64-linux-gnu (= 13.2.0-19ubuntu1), gcc-14-base (= 14-20240315-1ubuntu1), gcc-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3build1), gzip (= 1.12-1ubuntu2), hostname (= 3.23+nmu2ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240315-1ubuntu1), libatomic1 (= 14-20240315-1ubuntu1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4ubuntu1), libblkid1 (= 2.39.3-9ubuntu2), libbz2-1.0 (= 1.0.8-5ubuntu1), libc-bin (= 2.39-0ubuntu6), 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libisl23 (= 0.26-3), libitm1 (= 14-20240315-1ubuntu1), libjansson4 (= 2.14-2), liblsan0 (= 14-20240315-1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-9ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncbi6-dev (= 6.1.20170106+dfsg2-1), libncbi6t64 (= 6.1.20170106+dfsg2-1), libnettle8t64 (= 3.9.1-2.2), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu3), libpam-modules-bin (= 1.5.3-5ubuntu3), libpam-runtime (= 1.5.3-5ubuntu3), libpam0g (= 1.5.3-5ubuntu3), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1), libquadmath0 (= 14-20240315-1ubuntu1), libseccomp2 (= 2.5.5-1ubuntu2), libselinux1 (= 3.5-2ubuntu1), libsframe1 (= 2.42-4ubuntu1), libsmartcols1 (= 2.39.3-9ubuntu2), libssl3t64 (= 3.0.13-0ubuntu2), libstdc++-13-dev (= 13.2.0-19ubuntu1), libstdc++6 (= 14-20240315-1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu5), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20240113-1ubuntu1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1ubuntu1), libubsan1 (= 14-20240315-1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu5), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu2), libxml2 (= 2.9.14+dfsg-1.3ubuntu2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-20.20), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-3build4), mawk (= 1.3.4.20240123-1), ncbi-data (= 6.1.20170106+dfsg2-1), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), util-linux (= 2.39.3-9ubuntu2), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1711126379" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ readseq_1-14build1_amd64.deb ---------------------------- new Debian package, version 2.0. size 55280 bytes: control archive=1026 bytes. 658 bytes, 15 lines control 1030 bytes, 15 lines md5sums Package: readseq Version: 1-14build1 Architecture: amd64 Maintainer: Ubuntu Developers Installed-Size: 116 Depends: libc6 (>= 2.34), libncbi6t64 (>= 6.1.20030421) Section: science Priority: optional Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Description: Conversion between sequence formats Reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences. Readseq is particularly useful as it automatically detects many sequence formats, and converts between them. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2024-03-22 16:52 ./ drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/ drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/bin/ -rwxr-xr-x root/root 63752 2024-03-22 16:52 ./usr/bin/readseq drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/ drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/doc/readseq/ -rw-r--r-- root/root 13869 2024-03-22 16:52 ./usr/share/doc/readseq/Formats.gz -rw-r--r-- root/root 2018 2020-10-30 19:20 ./usr/share/doc/readseq/README.Debian -rw-r--r-- root/root 323 2020-10-30 19:20 ./usr/share/doc/readseq/README.test -rw-r--r-- root/root 2923 1993-02-01 00:00 ./usr/share/doc/readseq/Readme.gz -rw-r--r-- root/root 4138 1992-12-30 00:00 ./usr/share/doc/readseq/Readseq.help.gz -rw-r--r-- root/root 3731 1992-12-30 00:00 ./usr/share/doc/readseq/Stdfiles -rw-r--r-- root/root 647 2024-03-22 16:52 ./usr/share/doc/readseq/changelog.Debian.gz -rw-r--r-- root/root 996 2020-10-30 19:20 ./usr/share/doc/readseq/copyright drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/doc/readseq/tests/ -rw-r--r-- root/root 2278 2020-10-30 19:20 ./usr/share/doc/readseq/tests/Makefile -rw-r--r-- root/root 135 2024-03-22 16:52 ./usr/share/doc/readseq/tests/alphabet.std -rw-r--r-- root/root 1180 1992-12-30 00:00 ./usr/share/doc/readseq/tests/multi.std -rw-r--r-- root/root 253 1992-12-30 00:00 ./usr/share/doc/readseq/tests/nucleic.std -rw-r--r-- root/root 131 1992-12-30 00:00 ./usr/share/doc/readseq/tests/upper.std drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/man/man1/ -rw-r--r-- root/root 2003 2024-03-22 16:52 ./usr/share/man/man1/readseq.1.gz drwxr-xr-x root/root 0 2024-03-22 16:52 ./usr/share/readseq/ lrwxrwxrwx root/root 0 2024-03-22 16:52 ./usr/share/readseq/readseq_help.gz -> ../doc/readseq/Readseq.help.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 1608 Build-Time: 6 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 7 Job: readseq_1-14build1.dsc Machine Architecture: amd64 Package: readseq Package-Time: 14 Source-Version: 1-14build1 Space: 1608 Status: successful Version: 1-14build1 -------------------------------------------------------------------------------- Finished at 2024-03-22T16:58:13Z Build needed 00:00:14, 1608k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27952265 Scanning for processes to kill in build PACKAGEBUILD-27952265