https://launchpad.net/ubuntu/+source/prody/2.4.1+dfsg-2build1/+build/28044408 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-077 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu20.04.1 python3-lpbuildd_236~650~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 10 Apr 21:51:33 ntpdate[1893]: adjust time server 10.211.37.1 offset -0.016229 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28044408 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-28044408 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28044408 Starting target for build PACKAGEBUILD-28044408 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28044408 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28044408 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28044408 Updating target for build PACKAGEBUILD-28044408 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1389 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6071 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/universe arm64 Packages [2868 B] Get:10 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [948 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [349 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [139 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [770 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [285 kB] Fetched 25.3 MB in 8s (3017 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13-aarch64-linux-gnu gcc-14-base gcc-aarch64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 175 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 77.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3build3 [72.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcrypt-dev arm64 1:4.4.36-4build1 [118 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu7 [64.8 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu8 [1596 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu8 [19.7 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1build1 [201 kB] Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libnss-nisplus arm64 1.3-5build1 [22.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1build1 [83.6 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-6ubuntu2 [141 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-6ubuntu2 [349 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-6ubuntu2 [85.6 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-6ubuntu2 [33.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libacl1 arm64 2.3.2-1build1 [17.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0-beta3-0ubuntu3 [50.0 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.4-2build2 [14.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-2.1build1 [47.6 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblkid1 arm64 2.39.3-9ubuntu5 [123 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcap2 arm64 1:2.66-5ubuntu2 [30.2 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcrypt1 arm64 1:4.4.36-4build1 [85.9 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgpg-error-l10n all 1.47-3build2 [8064 B] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgpg-error0 arm64 1.47-3build2 [70.0 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgcrypt20 arm64 1.10.3-2build1 [472 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.6.1+really5.4.5-1 [125 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libzstd1 arm64 1.5.5+dfsg2-2build1 [271 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkmod2 arm64 31+20240202-2ubuntu6 [51.7 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblz4-1 arm64 1.9.4-1build1 [64.1 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu2 [212 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-2ubuntu2 [79.9 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmount1 arm64 2.39.3-9ubuntu5 [133 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-6build1 [721 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6t64 arm64 1.23-5.1build1 [34.4 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4t64 arm64 1.23-5.1build1 [6578 B] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.38t64 arm64 5.38.2-3.2build2 [4774 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.38.2-3.2build2 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.38.2-3.2build2 [1777 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 liblocale-gettext-perl arm64 1.07-6ubuntu5 [15.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-iconv-perl arm64 1.7-8build3 [13.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-charwidth-perl arm64 0.04-11build3 [9406 B] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu8 [2774 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu8 [591 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.13-0ubuntu3 [984 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd-shared arm64 255.4-1ubuntu7 [2016 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcryptsetup12 arm64 2:2.7.0-1ubuntu4 [262 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3t64 arm64 3.0.13-0ubuntu3 [1793 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-dev all 255.4-1ubuntu7 [104 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 systemd-sysv arm64 255.4-1ubuntu7 [11.9 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 systemd arm64 255.4-1ubuntu7 [3403 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libsystemd0 arm64 255.4-1ubuntu7 [424 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.3-5ubuntu4 [50.5 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.3-5ubuntu4 [278 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libnettle8t64 arm64 3.9.1-2.2build1 [192 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libhogweed6t64 arm64 3.9.1-2.2build1 [199 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libp11-kit0 arm64 0.25.3-4ubuntu2 [276 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libunistring5 arm64 1.1-2build1 [530 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu3 [942 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libapt-pkg6.0t64 arm64 2.7.14build2 [935 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bzip2 arm64 1.0.8-5.1 [34.0 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbz2-1.0 arm64 1.0.8-5.1 [35.7 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-14-base arm64 14-20240330-1ubuntu2 [47.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 14-20240330-1ubuntu2 [50.4 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 14-20240330-1ubuntu2 [748 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libudev1 arm64 255.4-1ubuntu7 [173 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxxhash0 arm64 0.8.2-2build1 [21.7 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu2 [61.7 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2ubuntu5 [243 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libffi8 arm64 3.4.6-1build1 [22.7 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libidn2-0 arm64 2.3.7-2build1 [67.2 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtasn1-6 arm64 4.19.0-3build1 [43.1 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu3 [11.3 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 base-passwd arm64 3.6.3build1 [51.1 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libassuan0 arm64 2.5.6-1build1 [36.8 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.45.1-1ubuntu2 [703 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 gpg arm64 2.4.4-2ubuntu17 [548 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8t64 arm64 8.2-4build1 [153 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-4build1 [56.5 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libncursesw6 arm64 6.4+20240113-1ubuntu2 [145 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtinfo6 arm64 6.4+20240113-1ubuntu2 [104 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 gpg-agent arm64 2.4.4-2ubuntu17 [221 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 gpgconf arm64 2.4.4-2ubuntu17 [103 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu5 [34.3 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libnpth0t64 arm64 1.6-3.1build1 [8144 B] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 gpgv arm64 2.4.4-2ubuntu17 [150 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libseccomp2 arm64 2.5.5-1ubuntu3 [51.1 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 apt-utils arm64 2.7.14build2 [205 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 apt arm64 2.7.14build2 [1336 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 debconf-i18n all 1.5.86 [205 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 debconf all 1.5.86 [124 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.3-5ubuntu4 [67.7 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libargon2-1 arm64 0~20190702+dfsg-4build1 [20.5 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-3ubuntu3 [128 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjson-c5 arm64 0.17-1build1 [36.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libuuid1 arm64 2.39.3-9ubuntu5 [35.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfdisk1 arm64 2.39.3-9ubuntu5 [142 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 mount arm64 2.39.3-9ubuntu5 [116 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcom-err2 arm64 1.47.0-2.4~exp1ubuntu4 [22.4 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkeyutils1 arm64 1.6.3-3build1 [9654 B] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3build3 [41.6 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-22.22 [1571 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu9 [73.9 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.17build1 [90.2 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu4 [780 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bsdutils arm64 1:2.39.3-9ubuntu5 [97.7 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-3ubuntu6 [1363 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 tar arm64 1.35+dfsg-3build1 [248 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.6ubuntu6 [1265 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 dash arm64 0.5.12-6ubuntu5 [90.4 kB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 diffutils arm64 1:3.10-1build1 [175 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 findutils arm64 4.9.0-5build1 [300 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 grep arm64 3.11-4build1 [159 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gzip arm64 1.12-1ubuntu3 [97.2 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 hostname arm64 3.23+nmu2ubuntu2 [11.0 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 login arm64 1:4.13+dfsg1-4ubuntu3 [200 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ncurses-bin arm64 6.4+20240113-1ubuntu2 [186 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 sed arm64 4.9-2build1 [191 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 util-linux arm64 2.39.3-9ubuntu5 [1114 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 sysvinit-utils arm64 3.08-6ubuntu3 [33.8 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 logsave arm64 1.47.0-2.4~exp1ubuntu4 [22.2 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libext2fs2t64 arm64 1.47.0-2.4~exp1ubuntu4 [225 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 e2fsprogs arm64 1.47.0-2.4~exp1ubuntu4 [594 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.8+ds-1build2 [109 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16t64 arm64 1.6.43-5build1 [185 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsmartcols1 arm64 2.39.3-9ubuntu5 [64.4 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 uuid-runtime arm64 2.39.3-9ubuntu5 [32.5 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libattr1 arm64 1:2.5.2-1build1 [11.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmd0 arm64 1.1.0-2build1 [24.6 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsepol2 arm64 3.5-2build1 [291 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build5 [90.8 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 passwd arm64 1:4.13+dfsg1-4ubuntu3 [839 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu3 [58.5 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libss2 arm64 1.47.0-2.4~exp1ubuntu4 [16.5 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 mawk arm64 1.3.4.20240123-1build1 [124 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-4ubuntu3 [708 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 sensible-utils all 0.0.22 [22.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates all 20240203 [159 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 tzdata all 2024a-2ubuntu1 [273 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bsdextrautils arm64 2.39.3-9ubuntu5 [71.5 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libgpm2 arm64 1.20.7-11 [14.7 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libip4tc2 arm64 1.8.10-3ubuntu2 [23.4 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libjansson4 arm64 2.14-2build2 [34.4 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 psmisc arm64 23.7-1build1 [178 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.6.1+really5.4.5-1 [268 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 advancecomp arm64 2.5-1build1 [177 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.42-4ubuntu2 [777 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.42-4ubuntu2 [95.7 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.42-4ubuntu2 [99.8 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.42-4ubuntu2 [3291 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.42-4ubuntu2 [767 kB] Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.42-4ubuntu2 [18.1 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.42-4ubuntu2 [239 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.42-4ubuntu2 [14.4 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240330-1ubuntu2 [1151 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-23ubuntu3 [14.5 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-23ubuntu3 [2378 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240330-1ubuntu2 [144 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240330-1ubuntu2 [27.9 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240330-1ubuntu2 [11.4 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240330-1ubuntu2 [2920 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240330-1ubuntu2 [1282 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240330-1ubuntu2 [1599 kB] Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-23ubuntu3 [469 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-23ubuntu3 [2468 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240330-1ubuntu2 [2688 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240330-1ubuntu2 [44.7 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-23ubuntu3 [1030 B] Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-23ubuntu3 [48.7 kB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libisl23 arm64 0.26-3build1 [669 kB] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmpfr6 arm64 4.2.1-1build1 [329 kB] Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmpc3 arm64 1.3.1-1build1 [56.4 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu3 [20.1 MB] Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu3 [11.7 MB] Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-23ubuntu3 [10.3 MB] Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 g++ arm64 4:13.2.0-7ubuntu2 [1082 B] Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc arm64 4:13.2.0-7ubuntu2 [5012 B] Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cpp arm64 4:13.2.0-7ubuntu2 [22.4 kB] Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu2 [5408 B] Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu2 [1200 B] Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu2 [962 B] Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 patch arm64 2.7.6-7build3 [101 kB] Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 make arm64 4.3-4.1build2 [178 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB] Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfakeroot arm64 1.33-1build1 [32.6 kB] Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 fakeroot arm64 1.33-1build1 [66.9 kB] Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblockfile-bin arm64 1.17-1build3 [11.0 kB] Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblockfile1 arm64 1.17-1build3 [6874 B] Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 lockfile-progs arm64 0.1.19build2 [8440 B] Preconfiguring packages ... Fetched 116 MB in 7s (16.8 MB/s) (Reading database ... 13662 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build3_arm64.deb ... Unpacking libnsl-dev:arm64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4build1_arm64.deb ... Unpacking libcrypt-dev:arm64 (1:4.4.36-4build1) over (1:4.4.36-2) ... Preparing to unpack .../2-rpcsvc-proto_1.4.2-0ubuntu7_arm64.deb ... Unpacking rpcsvc-proto (1.4.2-0ubuntu7) over (1.4.2-0ubuntu6) ... Preparing to unpack .../3-libc6-dev_2.39-0ubuntu8_arm64.deb ... Unpacking libc6-dev:arm64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libc-dev-bin_2.39-0ubuntu8_arm64.deb ... Unpacking libc-dev-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../5-libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../6-libtirpc-dev_1.3.4+ds-1.1build1_arm64.deb ... Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../7-libnss-nisplus_1.3-5build1_arm64.deb ... Unpacking libnss-nisplus:arm64 (1.3-5build1) over (1.3-0ubuntu6) ... dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). (Reading database ... 13665 files and directories currently installed.) Removing libtirpc3:arm64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:arm64. (Reading database ... 13659 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1build1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1build1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6ubuntu2_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../2-libkrb5-3_1.20.1-6ubuntu2_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-6ubuntu2_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../4-libkrb5support0_1.20.1-6ubuntu2_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../5-libacl1_2.3.2-1build1_arm64.deb ... Unpacking libacl1:arm64 (2.3.2-1build1) over (2.3.1-3) ... Setting up libacl1:arm64 (2.3.2-1build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0-beta3-0ubuntu3_arm64.deb ... Unpacking libapparmor1:arm64 (4.0.0-beta3-0ubuntu3) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1build1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.2-2.1build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2build2_arm64.deb ... Unpacking libcap-ng0:arm64 (0.8.4-2build2) over (0.8.3-1build2) ... Setting up libcap-ng0:arm64 (0.8.4-2build2) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1build1_arm64.deb ... Unpacking libaudit1:arm64 (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit1:arm64 (1:3.1.2-2.1build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-9ubuntu5_arm64.deb ... Unpacking libblkid1:arm64 (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Setting up libblkid1:arm64 (2.39.3-9ubuntu5) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5ubuntu2_arm64.deb ... Unpacking libcap2:arm64 (1:2.66-5ubuntu2) over (1:2.66-4ubuntu1) ... Setting up libcap2:arm64 (1:2.66-5ubuntu2) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4build1_arm64.deb ... Unpacking libcrypt1:arm64 (1:4.4.36-4build1) over (1:4.4.36-2) ... Setting up libcrypt1:arm64 (1:4.4.36-4build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libgpg-error-l10n_1.47-3build2_all.deb ... Unpacking libgpg-error-l10n (1.47-3build2) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3build2_arm64.deb ... Unpacking libgpg-error0:arm64 (1.47-3build2) over (1.47-2) ... Setting up libgpg-error0:arm64 (1.47-3build2) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2build1_arm64.deb ... Unpacking libgcrypt20:arm64 (1.10.3-2build1) over (1.10.2-3ubuntu1) ... Setting up libgcrypt20:arm64 (1.10.3-2build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_arm64.deb ... Unpacking liblzma5:arm64 (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Setting up liblzma5:arm64 (5.6.1+really5.4.5-1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2build1_arm64.deb ... Unpacking libzstd1:arm64 (1.5.5+dfsg2-2build1) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:arm64 (1.5.5+dfsg2-2build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libkmod2_31+20240202-2ubuntu6_arm64.deb ... Unpacking libkmod2:arm64 (31+20240202-2ubuntu6) over (30+20230519-1ubuntu3) ... Preparing to unpack .../liblz4-1_1.9.4-1build1_arm64.deb ... Unpacking liblz4-1:arm64 (1.9.4-1build1) over (1.9.4-1) ... Setting up liblz4-1:arm64 (1.9.4-1build1) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4ubuntu2_arm64.deb ... Unpacking libpcre2-8-0:arm64 (10.42-4ubuntu2) over (10.42-4) ... Setting up libpcre2-8-0:arm64 (10.42-4ubuntu2) ... (Reading database ... 13670 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2ubuntu2_arm64.deb ... Unpacking libselinux1:arm64 (3.5-2ubuntu2) over (3.5-1) ... Setting up libselinux1:arm64 (3.5-2ubuntu2) ... (Reading database ... 13671 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-9ubuntu5_arm64.deb ... Unpacking libmount1:arm64 (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Setting up libmount1:arm64 (2.39.3-9ubuntu5) ... (Reading database ... 13671 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3.2build2_arm64.deb ... Unpacking perl (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2build2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2build2) ... dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libdb5.3. libpam-modules:arm64 depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 15083 files and directories currently installed.) Removing libdb5.3:arm64 (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:arm64. (Reading database ... 15077 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6build1_arm64.deb ... Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-6build1) ... dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16). (Reading database ... 15083 files and directories currently installed.) Removing libgdbm6:arm64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:arm64. (Reading database ... 15078 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1build1_arm64.deb ... Unpacking libgdbm6t64:arm64 (1.23-5.1build1) ... dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 15084 files and directories currently installed.) Removing libgdbm-compat4:arm64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:arm64. (Reading database ... 15079 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1build1_arm64.deb ... Unpacking libgdbm-compat4t64:arm64 (1.23-5.1build1) ... Selecting previously unselected package libperl5.38t64:arm64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2build2_arm64.deb ... Unpacking libperl5.38t64:arm64 (5.38.2-3.2build2) ... Preparing to unpack .../perl-base_5.38.2-3.2build2_arm64.deb ... Unpacking perl-base (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build2) ... (Reading database ... 15617 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../libtext-iconv-perl_1.7-8build3_arm64.deb ... Unpacking libtext-iconv-perl:arm64 (1.7-8build3) over (1.7-8) ... Preparing to unpack .../libtext-charwidth-perl_0.04-11build3_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11build3) over (0.04-11) ... Preparing to unpack .../libc6_2.39-0ubuntu8_arm64.deb ... Unpacking libc6:arm64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc6:arm64 (2.39-0ubuntu8) ... (Reading database ... 15619 files and directories currently installed.) Preparing to unpack .../libc-bin_2.39-0ubuntu8_arm64.deb ... Unpacking libc-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc-bin (2.39-0ubuntu8) ... (Reading database ... 15619 files and directories currently installed.) Preparing to unpack .../openssl_3.0.13-0ubuntu3_arm64.deb ... Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../libsystemd-shared_255.4-1ubuntu7_arm64.deb ... Unpacking libsystemd-shared:arm64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu4_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.7.0-1ubuntu4) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15618 files and directories currently installed.) Removing libssl3:arm64 (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:arm64. (Reading database ... 15607 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_arm64.deb ... Unpacking libssl3t64:arm64 (3.0.13-0ubuntu3) ... Setting up libssl3t64:arm64 (3.0.13-0ubuntu3) ... (Reading database ... 15620 files and directories currently installed.) Preparing to unpack .../systemd-dev_255.4-1ubuntu7_all.deb ... Unpacking systemd-dev (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-sysv_255.4-1ubuntu7_arm64.deb ... Unpacking systemd-sysv (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd_255.4-1ubuntu7_arm64.deb ... Unpacking systemd (255.4-1ubuntu7) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu7_arm64.deb ... Unpacking libsystemd0:arm64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libsystemd0:arm64 (255.4-1ubuntu7) ... (Reading database ... 15782 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu4_arm64.deb ... Unpacking libpam-modules-bin (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.3-5ubuntu4) ... (Reading database ... 15781 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-5ubuntu4_arm64.deb ... Unpacking libpam-modules:arm64 (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/aarch64-linux-gnu/security': Directory not empty Setting up libpam-modules:arm64 (1.5.3-5ubuntu4) ... Installing new version of config file /etc/security/namespace.init ... dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libhogweed6 (>= 3.6). (Reading database ... 15778 files and directories currently installed.) Removing libhogweed6:arm64 (3.9.1-2) ... dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libnettle8 (>= 3.7~). Removing libnettle8:arm64 (3.9.1-2) ... Selecting previously unselected package libnettle8t64:arm64. (Reading database ... 15766 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2build1_arm64.deb ... Unpacking libnettle8t64:arm64 (3.9.1-2.2build1) ... Setting up libnettle8t64:arm64 (3.9.1-2.2build1) ... Selecting previously unselected package libhogweed6t64:arm64. (Reading database ... 15774 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2build1_arm64.deb ... Unpacking libhogweed6t64:arm64 (3.9.1-2.2build1) ... Setting up libhogweed6t64:arm64 (3.9.1-2.2build1) ... (Reading database ... 15780 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4ubuntu2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.3-4ubuntu2) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:arm64 (0.25.3-4ubuntu2) ... Selecting previously unselected package libunistring5:arm64. (Reading database ... 15780 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2build1_arm64.deb ... Unpacking libunistring5:arm64 (1.1-2build1) ... Setting up libunistring5:arm64 (1.1-2build1) ... dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 15785 files and directories currently installed.) Removing libgnutls30:arm64 (3.8.1-4ubuntu1) ... Selecting previously unselected package libgnutls30t64:arm64. (Reading database ... 15775 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu3_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.3-1.1ubuntu3) ... Setting up libgnutls30t64:arm64 (3.8.3-1.1ubuntu3) ... dpkg: libapt-pkg6.0:arm64: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). (Reading database ... 15787 files and directories currently installed.) Removing libapt-pkg6.0:arm64 (2.7.3) ... Selecting previously unselected package libapt-pkg6.0t64:arm64. (Reading database ... 15738 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14build2_arm64.deb ... Unpacking libapt-pkg6.0t64:arm64 (2.7.14build2) ... Setting up libapt-pkg6.0t64:arm64 (2.7.14build2) ... (Reading database ... 15788 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-5.1_arm64.deb ... Unpacking bzip2 (1.0.8-5.1) over (1.0.8-5build1) ... dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_arm64.deb ... Unpacking libbz2-1.0:arm64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:arm64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:arm64. (Reading database ... 15788 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240330-1ubuntu2_arm64.deb ... Unpacking gcc-14-base:arm64 (14-20240330-1ubuntu2) ... Setting up gcc-14-base:arm64 (14-20240330-1ubuntu2) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240330-1ubuntu2_arm64.deb ... Unpacking libgcc-s1:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:arm64 (14-20240330-1ubuntu2) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240330-1ubuntu2_arm64.deb ... Unpacking libstdc++6:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:arm64 (14-20240330-1ubuntu2) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libudev1_255.4-1ubuntu7_arm64.deb ... Unpacking libudev1:arm64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libudev1:arm64 (255.4-1ubuntu7) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2build1_arm64.deb ... Unpacking libxxhash0:arm64 (0.8.2-2build1) over (0.8.1-1) ... Setting up libxxhash0:arm64 (0.8.2-2build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu2) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu5_arm64.deb ... Unpacking libgmp10:arm64 (2:6.3.0+dfsg-2ubuntu5) over (2:6.3.0+dfsg-2ubuntu4) ... Setting up libgmp10:arm64 (2:6.3.0+dfsg-2ubuntu5) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1build1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1build1) over (3.4.4-1) ... Setting up libffi8:arm64 (3.4.6-1build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2build1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2build1) over (2.3.4-1) ... Setting up libidn2-0:arm64 (2.3.7-2build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3build1_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3build1) over (4.19.0-3) ... Setting up libtasn1-6:arm64 (4.19.0-3build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271ubuntu3_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.271ubuntu3) over (0.270ubuntu1) ... Setting up libdebconfclient0:arm64 (0.271ubuntu3) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3build1_arm64.deb ... Unpacking base-passwd (3.6.3build1) over (3.6.1) ... Setting up base-passwd (3.6.3build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libassuan0_2.5.6-1build1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1build1) over (2.5.6-1) ... Setting up libassuan0:arm64 (2.5.6-1build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.1-1ubuntu2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.45.1-1ubuntu2) over (3.42.0-1) ... Preparing to unpack .../gpg_2.4.4-2ubuntu17_arm64.deb ... Unpacking gpg (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: gpgconf depends on libreadline8 (>= 6.0). (Reading database ... 15793 files and directories currently installed.) Removing libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:arm64. (Reading database ... 15781 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4build1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240113-1ubuntu2_arm64.deb ... Unpacking libncursesw6:arm64 (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20240113-1ubuntu2_arm64.deb ... Unpacking libtinfo6:arm64 (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up libtinfo6:arm64 (6.4+20240113-1ubuntu2) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../gpg-agent_2.4.4-2ubuntu17_arm64.deb ... Unpacking gpg-agent (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../gpgconf_2.4.4-2ubuntu17_arm64.deb ... Unpacking gpgconf (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_arm64.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... (Reading database ... 15800 files and directories currently installed.) Removing libnpth0:arm64 (1.6-3build2) ... Selecting previously unselected package libnpth0t64:arm64. (Reading database ... 15795 files and directories currently installed.) Preparing to unpack .../libnpth0t64_1.6-3.1build1_arm64.deb ... Unpacking libnpth0t64:arm64 (1.6-3.1build1) ... Setting up libnpth0t64:arm64 (1.6-3.1build1) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../gpgv_2.4.4-2ubuntu17_arm64.deb ... Unpacking gpgv (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Setting up gpgv (2.4.4-2ubuntu17) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1ubuntu3_arm64.deb ... Unpacking libseccomp2:arm64 (2.5.5-1ubuntu3) over (2.5.4-1ubuntu3) ... Setting up libseccomp2:arm64 (2.5.5-1ubuntu3) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.14build2_arm64.deb ... Unpacking apt-utils (2.7.14build2) over (2.7.3) ... Preparing to unpack .../apt_2.7.14build2_arm64.deb ... Unpacking apt (2.7.14build2) over (2.7.3) ... Setting up apt (2.7.14build2) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../debconf-i18n_1.5.86_all.deb ... Unpacking debconf-i18n (1.5.86) over (1.5.82) ... Preparing to unpack .../debconf_1.5.86_all.deb ... Unpacking debconf (1.5.86) over (1.5.82) ... Setting up debconf (1.5.86) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... 15800 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-5ubuntu4_arm64.deb ... Unpacking libpam0g:arm64 (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam0g:arm64 (1.5.3-5ubuntu4) ... (Reading database ... 15799 files and directories currently installed.) Preparing to unpack .../libargon2-1_0~20190702+dfsg-4build1_arm64.deb ... Unpacking libargon2-1:arm64 (0~20190702+dfsg-4build1) over (0~20190702+dfsg-3) ... Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu3_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu3) over (2:1.02.185-2ubuntu1) ... Preparing to unpack .../libjson-c5_0.17-1build1_arm64.deb ... Unpacking libjson-c5:arm64 (0.17-1build1) over (0.17-1) ... Preparing to unpack .../libuuid1_2.39.3-9ubuntu5_arm64.deb ... Unpacking libuuid1:arm64 (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Setting up libuuid1:arm64 (2.39.3-9ubuntu5) ... (Reading database ... 15799 files and directories currently installed.) Preparing to unpack .../0-libfdisk1_2.39.3-9ubuntu5_arm64.deb ... Unpacking libfdisk1:arm64 (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Preparing to unpack .../1-mount_2.39.3-9ubuntu5_arm64.deb ... Unpacking mount (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Preparing to unpack .../2-libcom-err2_1.47.0-2.4~exp1ubuntu4_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... Preparing to unpack .../3-libkeyutils1_1.6.3-3build1_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3build1) over (1.6.3-2) ... Preparing to unpack .../4-libnsl2_1.3.0-3build3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-22.22_arm64.deb ... Unpacking linux-libc-dev:arm64 (6.8.0-22.22) over (6.5.0-9.9) ... Preparing to unpack .../6-base-files_13ubuntu9_arm64.deb ... Unpacking base-files (13ubuntu9) over (13ubuntu3) ... Setting up base-files (13ubuntu9) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... 15818 files and directories currently installed.) Preparing to unpack .../debianutils_5.17build1_arm64.deb ... Unpacking debianutils (5.17build1) over (5.8-1) ... Setting up debianutils (5.17build1) ... (Reading database ... 15817 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu4_arm64.deb ... Unpacking bash (5.2.21-2ubuntu4) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 15817 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu5_arm64.deb ... Unpacking bsdutils (1:2.39.3-9ubuntu5) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.3-9ubuntu5) ... (Reading database ... 15817 files and directories currently installed.) Removing usrmerge (35ubuntu1) ... (Reading database ... 15791 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3ubuntu6_arm64.deb ... Unpacking coreutils (9.4-3ubuntu6) over (9.1-1ubuntu2) ... Setting up coreutils (9.4-3ubuntu6) ... (Reading database ... 15796 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3build1_arm64.deb ... Unpacking tar (1.35+dfsg-3build1) over (1.34+dfsg-1.2ubuntu1) ... Setting up tar (1.35+dfsg-3build1) ... (Reading database ... 15796 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.6ubuntu6_arm64.deb ... Unpacking dpkg (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.6ubuntu6) ... (Reading database ... 15794 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu5_arm64.deb ... Unpacking dash (0.5.12-6ubuntu5) over (0.5.12-6ubuntu1) ... Setting up dash (0.5.12-6ubuntu5) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1build1_arm64.deb ... Unpacking diffutils (1:3.10-1build1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1build1) ... (Reading database ... 15793 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5build1_arm64.deb ... Unpacking findutils (4.9.0-5build1) over (4.9.0-5) ... Setting up findutils (4.9.0-5build1) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../grep_3.11-4build1_arm64.deb ... Unpacking grep (3.11-4build1) over (3.11-2) ... Setting up grep (3.11-4build1) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1ubuntu3_arm64.deb ... Unpacking gzip (1.12-1ubuntu3) over (1.12-1ubuntu1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1ubuntu3) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2ubuntu2_arm64.deb ... Unpacking hostname (3.23+nmu2ubuntu2) over (3.23+nmu1ubuntu1) ... Setting up hostname (3.23+nmu2ubuntu2) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu3_arm64.deb ... Unpacking login (1:4.13+dfsg1-4ubuntu3) over (1:4.13+dfsg1-1ubuntu1) ... Setting up login (1:4.13+dfsg1-4ubuntu3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1ubuntu2_arm64.deb ... Unpacking ncurses-bin (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20240113-1ubuntu2) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../sed_4.9-2build1_arm64.deb ... Unpacking sed (4.9-2build1) over (4.9-1) ... Setting up sed (4.9-2build1) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-9ubuntu5_arm64.deb ... Unpacking util-linux (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.3-9ubuntu5) ... (Reading database ... 15794 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1ubuntu2_all.deb ... Unpacking ncurses-base (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20240113-1ubuntu2) ... (Reading database ... 15794 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-6ubuntu3_arm64.deb ... Unpacking sysvinit-utils (3.08-6ubuntu3) over (3.07-1ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-6ubuntu3) ... (Reading database ... 15792 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2.4~exp1ubuntu4_arm64.deb ... Unpacking logsave (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... dpkg: libext2fs2:arm64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). (Reading database ... 15792 files and directories currently installed.) Removing libext2fs2:arm64 (1.47.0-2ubuntu1) ... Selecting previously unselected package libext2fs2t64:arm64. (Reading database ... 15785 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:arm64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libcom-err2:arm64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libext2fs2t64:arm64 (1.47.0-2.4~exp1ubuntu4) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_arm64.deb ... Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty Preparing to unpack .../optipng_0.7.8+ds-1build2_arm64.deb ... Unpacking optipng (0.7.8+ds-1build2) over (0.7.7-2build1) ... (Reading database ... 15799 files and directories currently installed.) Removing libpng16-16:arm64 (1.6.40-1) ... Selecting previously unselected package libpng16-16t64:arm64. (Reading database ... 15789 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5build1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.43-5build1) ... Setting up libapparmor1:arm64 (4.0.0-beta3-0ubuntu3) ... Setting up libargon2-1:arm64 (0~20190702+dfsg-4build1) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu3) ... Setting up libjson-c5:arm64 (0.17-1build1) ... Setting up libcryptsetup12:arm64 (2:2.7.0-1ubuntu4) ... Setting up libfdisk1:arm64 (2.39.3-9ubuntu5) ... Setting up libkmod2:arm64 (31+20240202-2ubuntu6) ... Setting up libsystemd-shared:arm64 (255.4-1ubuntu7) ... Setting up systemd-dev (255.4-1ubuntu7) ... Setting up mount (2.39.3-9ubuntu5) ... Setting up systemd (255.4-1ubuntu7) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu7) ... (Reading database ... 15800 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_arm64.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu5_arm64.deb ... Unpacking libsmartcols1:arm64 (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:arm64 (2.39.3-9ubuntu5) ... (Reading database ... 15801 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu5_arm64.deb ... Unpacking uuid-runtime (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libattr1_1%3a2.5.2-1build1_arm64.deb ... Unpacking libattr1:arm64 (1:2.5.2-1build1) over (1:2.5.1-4) ... Setting up libattr1:arm64 (1:2.5.2-1build1) ... (Reading database ... 15799 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2build1_arm64.deb ... Unpacking libmd0:arm64 (1.1.0-2build1) over (1.1.0-1) ... Setting up libmd0:arm64 (1.1.0-2build1) ... (Reading database ... 15799 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.3-5ubuntu4) ... (Reading database ... 15798 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build5_all.deb ... Unpacking libsemanage-common (3.5-1build5) over (3.5-1) ... Setting up libsemanage-common (3.5-1build5) ... (Reading database ... 15798 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2build1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-2build1) over (3.5-1) ... Setting up libsepol2:arm64 (3.5-2build1) ... (Reading database ... 15798 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build5_arm64.deb ... Unpacking libsemanage2:arm64 (3.5-1build5) over (3.5-1) ... Setting up libsemanage2:arm64 (3.5-1build5) ... (Reading database ... 15798 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4ubuntu3_arm64.deb ... Unpacking passwd (1:4.13+dfsg1-4ubuntu3) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-4ubuntu3) ... (Reading database ... 15798 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4ubuntu3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu4_arm64.deb ... Unpacking libss2:arm64 (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20240123-1build1_arm64.deb ... Unpacking mawk (1.3.4.20240123-1build1) over (1.3.4.20230730-1) ... Preparing to unpack .../03-procps_2%3a4.0.4-4ubuntu3_arm64.deb ... Unpacking procps (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../04-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) over (0.0.20) ... Preparing to unpack .../05-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311ubuntu1) ... Preparing to unpack .../06-krb5-locales_1.20.1-6ubuntu2_all.deb ... Unpacking krb5-locales (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-tzdata_2024a-2ubuntu1_all.deb ... Unpacking tzdata (2024a-2ubuntu1) over (2023c-9ubuntu1) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.3-9ubuntu5_arm64.deb ... Unpacking bsdextrautils (2.39.3-9ubuntu5) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libgpm2_1.20.7-11_arm64.deb ... Unpacking libgpm2:arm64 (1.20.7-11) over (1.20.7-10build1) ... Preparing to unpack .../11-libip4tc2_1.8.10-3ubuntu2_arm64.deb ... Unpacking libip4tc2:arm64 (1.8.10-3ubuntu2) over (1.8.9-2ubuntu2) ... Preparing to unpack .../12-libjansson4_2.14-2build2_arm64.deb ... Unpacking libjansson4:arm64 (2.14-2build2) over (2.14-2) ... Preparing to unpack .../13-psmisc_23.7-1build1_arm64.deb ... Unpacking psmisc (23.7-1build1) over (23.6-1) ... Preparing to unpack .../14-xz-utils_5.6.1+really5.4.5-1_arm64.deb ... Unpacking xz-utils (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Preparing to unpack .../15-advancecomp_2.5-1build1_arm64.deb ... Unpacking advancecomp (2.5-1build1) over (2.5-1) ... Preparing to unpack .../16-libgprofng0_2.42-4ubuntu2_arm64.deb ... Unpacking libgprofng0:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../17-libctf0_2.42-4ubuntu2_arm64.deb ... Unpacking libctf0:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../18-libctf-nobfd0_2.42-4ubuntu2_arm64.deb ... Unpacking libctf-nobfd0:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../19-binutils-aarch64-linux-gnu_2.42-4ubuntu2_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../20-libbinutils_2.42-4ubuntu2_arm64.deb ... Unpacking libbinutils:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../21-binutils_2.42-4ubuntu2_arm64.deb ... Unpacking binutils (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../22-binutils-common_2.42-4ubuntu2_arm64.deb ... Unpacking binutils-common:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../23-libsframe1_2.42-4ubuntu2_arm64.deb ... Unpacking libsframe1:arm64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../24-libubsan1_14-20240330-1ubuntu2_arm64.deb ... Unpacking libubsan1:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../25-g++-13_13.2.0-23ubuntu3_arm64.deb ... Unpacking g++-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../26-libstdc++-13-dev_13.2.0-23ubuntu3_arm64.deb ... Unpacking libstdc++-13-dev:arm64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../27-libgomp1_14-20240330-1ubuntu2_arm64.deb ... Unpacking libgomp1:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../28-libitm1_14-20240330-1ubuntu2_arm64.deb ... Unpacking libitm1:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../29-libatomic1_14-20240330-1ubuntu2_arm64.deb ... Unpacking libatomic1:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../30-libasan8_14-20240330-1ubuntu2_arm64.deb ... Unpacking libasan8:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../31-liblsan0_14-20240330-1ubuntu2_arm64.deb ... Unpacking liblsan0:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../32-libhwasan0_14-20240330-1ubuntu2_arm64.deb ... Unpacking libhwasan0:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../33-gcc-13_13.2.0-23ubuntu3_arm64.deb ... Unpacking gcc-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../34-libgcc-13-dev_13.2.0-23ubuntu3_arm64.deb ... Unpacking libgcc-13-dev:arm64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../35-libtsan2_14-20240330-1ubuntu2_arm64.deb ... Unpacking libtsan2:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../36-libcc1-0_14-20240330-1ubuntu2_arm64.deb ... Unpacking libcc1-0:arm64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../37-cpp-13_13.2.0-23ubuntu3_arm64.deb ... Unpacking cpp-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../38-gcc-13-base_13.2.0-23ubuntu3_arm64.deb ... Unpacking gcc-13-base:arm64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../39-libisl23_0.26-3build1_arm64.deb ... Unpacking libisl23:arm64 (0.26-3build1) over (0.26-3) ... Preparing to unpack .../40-libmpfr6_4.2.1-1build1_arm64.deb ... Unpacking libmpfr6:arm64 (4.2.1-1build1) over (4.2.1-1) ... Preparing to unpack .../41-libmpc3_1.3.1-1build1_arm64.deb ... Unpacking libmpc3:arm64 (1.3.1-1build1) over (1.3.1-1) ... Selecting previously unselected package gcc-13-aarch64-linux-gnu. Preparing to unpack .../42-gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu3_arm64.deb ... Unpacking gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package g++-13-aarch64-linux-gnu. Preparing to unpack .../43-g++-13-aarch64-linux-gnu_13.2.0-23ubuntu3_arm64.deb ... Unpacking g++-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package cpp-13-aarch64-linux-gnu. Preparing to unpack .../44-cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu3_arm64.deb ... Unpacking cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Preparing to unpack .../45-g++_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking g++ (4:13.2.0-7ubuntu2) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../46-gcc_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking gcc (4:13.2.0-7ubuntu2) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../47-cpp_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking cpp (4:13.2.0-7ubuntu2) over (4:13.2.0-1ubuntu1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../48-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../49-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../50-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu2_arm64.deb ... Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Preparing to unpack .../51-dpkg-dev_1.22.6ubuntu6_all.deb ... Unpacking dpkg-dev (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../52-libdpkg-perl_1.22.6ubuntu6_all.deb ... Unpacking libdpkg-perl (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../53-patch_2.7.6-7build3_arm64.deb ... Unpacking patch (2.7.6-7build3) over (2.7.6-7build2) ... Preparing to unpack .../54-make_4.3-4.1build2_arm64.deb ... Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... Preparing to unpack .../55-lto-disabled-list_47_all.deb ... Unpacking lto-disabled-list (47) over (43) ... Preparing to unpack .../56-libfakeroot_1.33-1build1_arm64.deb ... Unpacking libfakeroot:arm64 (1.33-1build1) over (1.32.1-1) ... Preparing to unpack .../57-fakeroot_1.33-1build1_arm64.deb ... Unpacking fakeroot (1.33-1build1) over (1.32.1-1) ... Preparing to unpack .../58-liblockfile-bin_1.17-1build3_arm64.deb ... Unpacking liblockfile-bin (1.17-1build3) over (1.17-1build2) ... Preparing to unpack .../59-liblockfile1_1.17-1build3_arm64.deb ... Unpacking liblockfile1:arm64 (1.17-1build3) over (1.17-1build2) ... Preparing to unpack .../60-lockfile-progs_0.1.19build2_arm64.deb ... Unpacking lockfile-progs (0.1.19build2) over (0.1.19build1) ... Setting up libip4tc2:arm64 (1.8.10-3ubuntu2) ... Setting up libtext-iconv-perl:arm64 (1.7-8build3) ... Setting up libtext-charwidth-perl:arm64 (0.04-11build3) ... Setting up libkeyutils1:arm64 (1.6.3-3build1) ... Setting up lto-disabled-list (47) ... Setting up libgpm2:arm64 (1.20.7-11) ... Setting up liblockfile-bin (1.17-1build3) ... Setting up libgdbm6t64:arm64 (1.23-5.1build1) ... Setting up bsdextrautils (2.39.3-9ubuntu5) ... Setting up init (1.66ubuntu1) ... Setting up libgdbm-compat4t64:arm64 (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:arm64 (3.45.1-1ubuntu2) ... Setting up binutils-common:arm64 (2.42-4ubuntu2) ... Installing new version of config file /etc/gprofng.rc ... Setting up linux-libc-dev:arm64 (6.8.0-22.22) ... Setting up libctf-nobfd0:arm64 (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:arm64 (14-20240330-1ubuntu2) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:arm64 (2.42-4ubuntu2) ... Setting up libfakeroot:arm64 (1.33-1build1) ... Setting up libjansson4:arm64 (2.14-2build2) ... Setting up libkrb5support0:arm64 (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 10 21:53:00 UTC 2024. Universal Time is now: Wed Apr 10 21:53:00 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1build1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... Setting up gcc-13-base:arm64 (13.2.0-23ubuntu3) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:arm64 (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... Setting up libproc2-0:arm64 (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:arm64 (1.6.43-5build1) ... Setting up libmpc3:arm64 (1.3.1-1build1) ... Setting up libatomic1:arm64 (14-20240330-1ubuntu2) ... Setting up patch (2.7.6-7build3) ... Setting up libss2:arm64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libncursesw6:arm64 (6.4+20240113-1ubuntu2) ... Setting up libk5crypto3:arm64 (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu4) ... Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-6build1) ... Setting up libubsan1:arm64 (14-20240330-1ubuntu2) ... Setting up advancecomp (2.5-1build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu5) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libhwasan0:arm64 (14-20240330-1ubuntu2) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4build1) ... Setting up libasan8:arm64 (14-20240330-1ubuntu2) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:arm64 (1.20.1-6ubuntu2) ... Setting up liblockfile1:arm64 (1.17-1build3) ... Setting up libperl5.38t64:arm64 (5.38.2-3.2build2) ... Setting up libtsan2:arm64 (14-20240330-1ubuntu2) ... Setting up libbinutils:arm64 (2.42-4ubuntu2) ... Setting up libisl23:arm64 (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:arm64 (14-20240330-1ubuntu2) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up liblsan0:arm64 (14-20240330-1ubuntu2) ... Setting up libitm1:arm64 (14-20240330-1ubuntu2) ... Setting up libctf0:arm64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up libgprofng0:arm64 (2.42-4ubuntu2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:arm64 (8.2-4build1) ... Setting up libgcc-13-dev:arm64 (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:arm64 (2.39-0ubuntu8) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:arm64 (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1build1) ... Setting up binutils-aarch64-linux-gnu (2.42-4ubuntu2) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu2) ... Setting up libnsl2:arm64 (1.3.0-3build3) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-23ubuntu3) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:arm64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu2) ... Setting up libnsl-dev:arm64 (1.3.0-3build3) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu2) ... Setting up g++ (4:13.2.0-7ubuntu2) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15845 files and directories currently installed.) Purging configuration files for libssl3:arm64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28044408 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-28044408 --arch=arm64 --dist=noble-proposed --nolog prody_2.4.1+dfsg-2build1.dsc Initiating build PACKAGEBUILD-28044408 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-077.buildd +==============================================================================+ | prody 2.4.1+dfsg-2build1 (arm64) Wed, 10 Apr 2024 21:53:15 +0000 | +==============================================================================+ Package: prody Version: 2.4.1+dfsg-2build1 Source Version: 2.4.1+dfsg-2build1 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28044408/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/prody-tk6Umz/resolver-xVFPzr' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- prody_2.4.1+dfsg-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/prody-tk6Umz/prody-2.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/prody-tk6Umz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython, python3-numpy, python3-pyparsing, python3-scipy, python3-setuptools, python3-zombie-imp, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [437 B] Get:5 copy:/<>/apt_archive ./ Packages [508 B] Fetched 1902 B in 0s (59.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-freetype python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.12 python3.12-dev python3.12-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff low-memory-monitor liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise gfortran python3-pytest python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python-setuptools-doc python3.12-venv python3.12-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-all-dev python3-biopython python3-cairo python3-chardet python3-decorator python3-dev python3-freetype python3-minimal python3-numpy python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-rlpycairo python3-scipy python3-setuptools python3-zombie-imp python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. Need to get 83.0 MB of archives. After this operation, 329 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [722 B] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-minimal arm64 3.12.2-5ubuntu3 [829 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1 arm64 2.6.1-2build1 [76.1 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-minimal arm64 3.12.2-5ubuntu3 [2253 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3-minimal arm64 3.12.2-0ubuntu2 [27.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-stdlib arm64 3.12.2-5ubuntu3 [2037 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12 arm64 3.12.2-5ubuntu3 [644 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-stdlib arm64 3.12.2-0ubuntu2 [9854 B] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 python3 arm64 3.12.2-0ubuntu2 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1build1 [40.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libelf1t64 arm64 0.190-1.1build4 [58.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfribidi0 arm64 1.0.13-3build1 [26.5 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libglib2.0-0t64 arm64 2.80.0-6ubuntu1 [1289 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libicu74 arm64 74.2-1ubuntu3 [10.8 MB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxml2 arm64 2.9.14+dfsg-1.3ubuntu3 [735 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic-mgc arm64 1:5.45-3build1 [307 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libmagic1t64 arm64 1:5.45-3build1 [85.7 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 file arm64 1:5.45-3build1 [22.0 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gettext-base arm64 0.21-14ubuntu2 [37.6 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libuchardet0 arm64 0.0.8-1build1 [75.4 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 groff-base arm64 1.23.0-3build2 [993 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpipeline1 arm64 1.5.7-2 [23.7 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxau6 arm64 1:1.0.9-1build6 [7264 B] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu6 [10.4 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb1 arm64 1.15-1 [47.6 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libx11-data all 2:1.8.7-1build1 [115 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libx11-6 arm64 2:1.8.7-1build1 [649 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxext6 arm64 2:1.3.4-1build2 [30.4 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 man-db arm64 2.12.0-4build2 [1232 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 m4 arm64 1.4.19-4build1 [240 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 autopoint all 0.21-14ubuntu2 [422 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtool all 2.4.7-7build1 [166 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1t64 arm64 0.190-1.1build4 [258 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5build2 [45.3 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1build6 [113 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gettext arm64 0.21-14ubuntu2 [845 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.14.1ubuntu5 [869 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 dh-python all 6.20240401 [110 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli1 arm64 1.1.0-2build2 [339 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libfreetype6 arm64 2.13.2+dfsg-1build3 [393 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 xfonts-utils arm64 1:7.7+6build3 [93.1 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-3 [554 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdeflate0 arm64 1.19-1build1 [43.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.6.1-2build1 [128 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240330-1ubuntu2 [443 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgraphite2-3 arm64 1.3.14-2build1 [70.8 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2build2 [463 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-6 [149 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB] Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12t64 arm64 3.12.2-5ubuntu3 [2275 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu2 [894 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.2-5ubuntu3 [5531 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-dev arm64 3.12.2-0ubuntu2 [10.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3-all-dev arm64 3.12.2-0ubuntu2 [910 B] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4build3 [14.5 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4build3 [191 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu2 [191 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4build3 [12.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4build3 [25.0 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.2-0ubuntu2 [888 B] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.2-5ubuntu3 [498 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dev arm64 3.12.2-0ubuntu2 [26.7 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all-dev arm64 3.12.2-0ubuntu2 [904 B] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.26.4+ds-6ubuntu1 [3565 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2build3 [171 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-pil arm64 10.2.0-1build1 [440 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2build2 [121 kB] Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-4 [1105 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-zombie-imp all 0.0.2-2 [11.9 kB] Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] Preconfiguring packages ... Fetched 83.0 MB in 8s (10.9 MB/s) Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... 15845 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-5ubuntu3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.2-5ubuntu3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.1-2build1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-5ubuntu3_arm64.deb ... Unpacking python3.12-minimal (3.12.2-5ubuntu3) ... Setting up libpython3.12-minimal:arm64 (3.12.2-5ubuntu3) ... Setting up libexpat1:arm64 (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-5ubuntu3) ... Selecting previously unselected package python3-minimal. (Reading database ... 16163 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.2-0ubuntu2_arm64.deb ... Unpacking python3-minimal (3.12.2-0ubuntu2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../3-libpython3.12-stdlib_3.12.2-5ubuntu3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.2-5ubuntu3) ... Selecting previously unselected package python3.12. Preparing to unpack .../4-python3.12_3.12.2-5ubuntu3_arm64.deb ... Unpacking python3.12 (3.12.2-5ubuntu3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../5-libpython3-stdlib_3.12.2-0ubuntu2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.2-0ubuntu2) ... Setting up python3-minimal (3.12.2-0ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 16604 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.2-0ubuntu2_arm64.deb ... Unpacking python3 (3.12.2-0ubuntu2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../002-libbsd0_0.12.1-1build1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.1-1build1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../003-libelf1t64_0.190-1.1build4_arm64.deb ... Unpacking libelf1t64:arm64 (0.190-1.1build4) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../004-libfribidi0_1.0.13-3build1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.13-3build1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../005-libglib2.0-0t64_2.80.0-6ubuntu1_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.80.0-6ubuntu1) ... Selecting previously unselected package libicu74:arm64. Preparing to unpack .../006-libicu74_74.2-1ubuntu3_arm64.deb ... Unpacking libicu74:arm64 (74.2-1ubuntu3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../007-libxml2_2.9.14+dfsg-1.3ubuntu3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3ubuntu3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../008-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... Unpacking python3-pkg-resources (68.1.2-2ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.45-3build1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3build1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../010-libmagic1t64_1%3a5.45-3build1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3build1) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.45-3build1_arm64.deb ... Unpacking file (1:5.45-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-14ubuntu2_arm64.deb ... Unpacking gettext-base (0.21-14ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../013-libuchardet0_0.0.8-1build1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../014-groff-base_1.23.0-3build2_arm64.deb ... Unpacking groff-base (1.23.0-3build2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../015-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../016-libxau6_1%3a1.0.9-1build6_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1build6) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../017-libxdmcp6_1%3a1.1.3-0ubuntu6_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.3-0ubuntu6) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../018-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../019-libx11-data_2%3a1.8.7-1build1_all.deb ... Unpacking libx11-data (2:1.8.7-1build1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../020-libx11-6_2%3a1.8.7-1build1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1build1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../021-libxext6_2%3a1.3.4-1build2_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1build2) ... Selecting previously unselected package man-db. Preparing to unpack .../022-man-db_2.12.0-4build2_arm64.deb ... Unpacking man-db (2.12.0-4build2) ... Selecting previously unselected package m4. Preparing to unpack .../023-m4_1.4.19-4build1_arm64.deb ... Unpacking m4 (1.4.19-4build1) ... Selecting previously unselected package autoconf. Preparing to unpack .../024-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../025-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../026-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... Unpacking automake (1:1.16.5-1.3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../027-autopoint_0.21-14ubuntu2_all.deb ... Unpacking autopoint (0.21-14ubuntu2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../028-libdebhelper-perl_13.14.1ubuntu5_all.deb ... Unpacking libdebhelper-perl (13.14.1ubuntu5) ... Selecting previously unselected package libtool. Preparing to unpack .../029-libtool_2.4.7-7build1_all.deb ... Unpacking libtool (2.4.7-7build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../030-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../031-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../032-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../033-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../034-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1t64:arm64. Preparing to unpack .../035-libdw1t64_0.190-1.1build4_arm64.deb ... Unpacking libdw1t64:arm64 (0.190-1.1build4) ... Selecting previously unselected package debugedit. Preparing to unpack .../036-debugedit_1%3a5.0-5build2_arm64.deb ... Unpacking debugedit (1:5.0-5build2) ... Selecting previously unselected package dwz. Preparing to unpack .../037-dwz_0.15-1build6_arm64.deb ... Unpacking dwz (0.15-1build6) ... Selecting previously unselected package gettext. Preparing to unpack .../038-gettext_0.21-14ubuntu2_arm64.deb ... Unpacking gettext (0.21-14ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../039-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../040-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../041-debhelper_13.14.1ubuntu5_all.deb ... Unpacking debhelper (13.14.1ubuntu5) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../042-python3-setuptools_68.1.2-2ubuntu1_all.deb ... Unpacking python3-setuptools (68.1.2-2ubuntu1) ... Selecting previously unselected package dh-python. Preparing to unpack .../043-dh-python_6.20240401_all.deb ... Unpacking dh-python (6.20240401) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../044-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../045-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../046-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../047-libbrotli1_1.1.0-2build2_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2build2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../048-libfreetype6_2.13.2+dfsg-1build3_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.2+dfsg-1build3) ... Selecting previously unselected package x11-common. Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ... Unpacking x11-common (1:7.7+23ubuntu3) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../050-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../051-xfonts-utils_1%3a7.7+6build3_arm64.deb ... Unpacking xfonts-utils (1:7.7+6build3) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../052-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../053-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../054-libblas3_3.12.0-3build1_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3build1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../055-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../056-libpixman-1-0_0.42.2-1build1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../057-libxcb-render0_1.15-1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../058-libxcb-shm0_1.15-1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.15-1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../060-libcairo2_1.18.0-3_arm64.deb ... Unpacking libcairo2:arm64 (1.18.0-3) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../061-libdeflate0_1.19-1build1_arm64.deb ... Unpacking libdeflate0:arm64 (1.19-1build1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../062-libexpat1-dev_2.6.1-2build1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.1-2build1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../063-libgfortran5_14-20240330-1ubuntu2_arm64.deb ... Unpacking libgfortran5:arm64 (14-20240330-1ubuntu2) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../064-libgraphite2-3_1.3.14-2build1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2build1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../065-libharfbuzz0b_8.3.0-2build2_arm64.deb ... Unpacking libharfbuzz0b:arm64 (8.3.0-2build2) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../066-libimagequant0_2.18.0-1build1_arm64.deb ... Unpacking libimagequant0:arm64 (2.18.0-1build1) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../067-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../069-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../070-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../071-libjs-sphinxdoc_7.2.6-6_all.deb ... Unpacking libjs-sphinxdoc (7.2.6-6) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../072-liblapack3_3.12.0-3build1_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-3build1) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../073-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../074-liblcms2-2_2.14-2build1_arm64.deb ... Unpacking liblcms2-2:arm64 (2.14-2build1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../075-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../076-libpython3.12t64_3.12.2-5ubuntu3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.2-5ubuntu3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../078-libpython3.12-dev_3.12.2-5ubuntu3_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.2-5ubuntu3) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../079-libpython3-dev_3.12.2-0ubuntu2_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.2-0ubuntu2) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../080-libpython3-all-dev_3.12.2-0ubuntu2_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.12.2-0ubuntu2) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../081-libraqm0_0.10.1-1build1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.1-1build1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../082-libsharpyuv0_1.3.2-0.4build3_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.3.2-0.4build3) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../083-libjbig0_2.1-6.1ubuntu2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../084-libwebp7_1.3.2-0.4build3_arm64.deb ... Unpacking libwebp7:arm64 (1.3.2-0.4build3) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../085-libtiff6_4.5.1+git230720-4ubuntu2_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu2) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../086-libwebpdemux2_1.3.2-0.4build3_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.3.2-0.4build3) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../087-libwebpmux3_1.3.2-0.4build3_arm64.deb ... Unpacking libwebpmux3:arm64 (1.3.2-0.4build3) ... Selecting previously unselected package python3-all. Preparing to unpack .../088-python3-all_3.12.2-0ubuntu2_arm64.deb ... Unpacking python3-all (3.12.2-0ubuntu2) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../089-python3.12-dev_3.12.2-5ubuntu3_arm64.deb ... Unpacking python3.12-dev (3.12.2-5ubuntu3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../090-python3-dev_3.12.2-0ubuntu2_arm64.deb ... Unpacking python3-dev (3.12.2-0ubuntu2) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../091-python3-all-dev_3.12.2-0ubuntu2_arm64.deb ... Unpacking python3-all-dev (3.12.2-0ubuntu2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../092-python3-numpy_1%3a1.26.4+ds-6ubuntu1_arm64.deb ... Unpacking python3-numpy (1:1.26.4+ds-6ubuntu1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../093-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../094-libopenjp2-7_2.5.0-2build3_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2build3) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../095-python3-pil_10.2.0-1build1_arm64.deb ... Unpacking python3-pil:arm64 (10.2.0-1build1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../096-python3-cairo_1.25.1-2build2_arm64.deb ... Unpacking python3-cairo (1.25.1-2build2) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../097-python3-freetype_2.4.0-1_all.deb ... Unpacking python3-freetype (2.4.0-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../098-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../099-python3-reportlab_4.1.0-4_all.deb ... Unpacking python3-reportlab (4.1.0-4) ... Selecting previously unselected package xml-core. Preparing to unpack .../100-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../101-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../102-python3-biopython_1.81+dfsg-3_arm64.deb ... Unpacking python3-biopython (1.81+dfsg-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../103-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../104-python3-pyparsing_3.1.1-1_all.deb ... Unpacking python3-pyparsing (3.1.1-1) ... Selecting previously unselected package python3-zombie-imp. Preparing to unpack .../105-python3-zombie-imp_0.0.2-2_all.deb ... Unpacking python3-zombie-imp (0.0.2-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../106-python3-scipy_1.11.4-6_arm64.deb ... Unpacking python3-scipy (1.11.4-6) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../107-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up libgraphite2-3:arm64 (1.3.14-2build1) ... Setting up liblcms2-2:arm64 (2.14-2build1) ... Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... Setting up libsharpyuv0:arm64 (1.3.2-0.4build3) ... Setting up libxau6:arm64 (1:1.0.9-1build6) ... Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libbrotli1:arm64 (1.1.0-2build2) ... Setting up libmagic1t64:arm64 (1:5.45-3build1) ... Setting up x11-common (1:7.7+23ubuntu3) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:arm64 (1.19-1build1) ... Setting up gettext-base (0.21-14ubuntu2) ... Setting up m4 (1.4.19-4build1) ... Setting up file (1:5.45-3build1) ... Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... Setting up libelf1t64:arm64 (0.190-1.1build4) ... Setting up libdw1t64:arm64 (0.190-1.1build4) ... Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.80.0-6ubuntu1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.1-2build1) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1build3) ... Setting up libx11-data (2:1.8.7-1build1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:arm64 (1.0.13-3build1) ... Setting up libimagequant0:arm64 (2.18.0-1build1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... Setting up libgfortran5:arm64 (14-20240330-1ubuntu2) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.4build3) ... Setting up libicu74:arm64 (74.2-1ubuntu3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up libuchardet0:arm64 (0.0.8-1build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libopenjp2-7:arm64 (2.5.0-2build3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2build2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libwebpmux3:arm64 (1.3.2-0.4build3) ... Setting up libbsd0:arm64 (0.12.1-1build1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3ubuntu3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjpeg8:arm64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu6) ... Setting up liblapack3:arm64 (3.12.0-3build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libpython3.12-stdlib:arm64 (3.12.2-5ubuntu3) ... Setting up libtool (2.4.7-7build1) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up libwebpdemux2:arm64 (1.3.2-0.4build3) ... Setting up python3.12 (3.12.2-5ubuntu3) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up xfonts-utils (1:7.7+6build3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.12t64:arm64 (3.12.2-5ubuntu3) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:arm64 (0.10.1-1build1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu2) ... Setting up xml-core (0.19) ... Setting up libx11-6:arm64 (2:1.8.7-1build1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... Setting up libpython3-stdlib:arm64 (3.12.2-0ubuntu2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1build2) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up libpython3.12-dev:arm64 (3.12.2-5ubuntu3) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:arm64 (1.18.0-3) ... Setting up python3-pil:arm64 (10.2.0-1build1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3.12-dev (3.12.2-5ubuntu3) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up python3-zombie-imp (0.0.2-2) ... Setting up libpython3-dev:arm64 (3.12.2-0ubuntu2) ... Setting up python3-cairo (1.25.1-2build2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up python3-all (3.12.2-0ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:arm64 (3.12.2-0ubuntu2) ... Setting up python3-dev (3.12.2-0ubuntu2) ... Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... Setting up python3-reportlab (4.1.0-4) ... Setting up dh-python (6.20240401) ... Setting up python3-all-dev (3.12.2-0ubuntu2) ... Setting up python3-scipy (1.11.4-6) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for systemd (255.4-1ubuntu7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024 arm64 (aarch64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-22.22 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-aarch64-linux-gnu_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu5 bsdutils_1:2.39.3-9ubuntu5 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu2 cpp-13_13.2.0-23ubuntu3 cpp-13-aarch64-linux-gnu_13.2.0-23ubuntu3 cpp-aarch64-linux-gnu_4:13.2.0-7ubuntu2 dash_0.5.12-6ubuntu5 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-python_6.20240401 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1build1 file_1:5.45-3build1 findutils_4.9.0-5build1 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu2 g++-13_13.2.0-23ubuntu3 g++-13-aarch64-linux-gnu_13.2.0-23ubuntu3 g++-aarch64-linux-gnu_4:13.2.0-7ubuntu2 gcc_4:13.2.0-7ubuntu2 gcc-13_13.2.0-23ubuntu3 gcc-13-aarch64-linux-gnu_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-14-base_14-20240330-1ubuntu2 gcc-aarch64-linux-gnu_4:13.2.0-7ubuntu2 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240330-1ubuntu2 libassuan0_2.5.6-1build1 libatomic1_14-20240330-1ubuntu2 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblas3_3.12.0-3build1 libblkid1_2.39.3-9ubuntu5 libbrotli1_1.1.0-2build2 libbsd0_0.12.1-1build1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcairo2_1.18.0-3 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240330-1ubuntu2 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdb5.3t64_5.3.28+dfsg2-6build1 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate0_1.19-1build1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libelf1t64_0.190-1.1build4 libexpat1_2.6.1-2build1 libexpat1-dev_2.6.1-2build1 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.33-1build1 libfdisk1_2.39.3-9ubuntu5 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.15.0-1.1ubuntu2 libfontenc1_1:1.1.8-1build1 libfreetype6_2.13.2+dfsg-1build3 libfribidi0_1.0.13-3build1 libgcc-13-dev_13.2.0-23ubuntu3 libgcc-s1_14-20240330-1ubuntu2 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgfortran5_14-20240330-1ubuntu2 libglib2.0-0t64_2.80.0-6ubuntu1 libgmp10_2:6.3.0+dfsg-2ubuntu5 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240330-1ubuntu2 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgraphite2-3_1.3.14-2build1 libgssapi-krb5-2_1.20.1-6ubuntu2 libharfbuzz0b_8.3.0-2build2 libhogweed6t64_3.9.1-2.2build1 libhwasan0_14-20240330-1ubuntu2 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libimagequant0_2.18.0-1build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240330-1ubuntu2 libjansson4_2.14-2build2 libjbig0_2.1-6.1ubuntu2 libjpeg-turbo8_2.1.5-2ubuntu2 libjpeg8_8c-2ubuntu11 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-6 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu6 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblapack3_3.12.0-3build1 liblbfgsb0_3.0+dfsg.4-1 liblcms2-2_2.14-2build1 liblerc4_4.0.0+ds-4ubuntu2 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14-20240330-1ubuntu2 liblz4-1_1.9.4-1build1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu5 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-5build1 libopenjp2-7_2.5.0-2build3 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu4 libpam-modules-bin_1.5.3-5ubuntu4 libpam-runtime_1.5.3-5ubuntu4 libpam0g_1.5.3-5ubuntu4 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpixman-1-0_0.42.2-1build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpython3-all-dev_3.12.2-0ubuntu2 libpython3-dev_3.12.2-0ubuntu2 libpython3-stdlib_3.12.2-0ubuntu2 libpython3.12-dev_3.12.2-5ubuntu3 libpython3.12-minimal_3.12.2-5ubuntu3 libpython3.12-stdlib_3.12.2-5ubuntu3 libpython3.12t64_3.12.2-5ubuntu3 libraqm0_0.10.1-1build1 libreadline8t64_8.2-4build1 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsharpyuv0_1.3.2-0.4build3 libsmartcols1_2.39.3-9ubuntu5 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu7 libsystemd0_255.4-1ubuntu7 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtiff6_4.5.1+git230720-4ubuntu2 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libtsan2_14-20240330-1ubuntu2 libubsan1_14-20240330-1ubuntu2 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu5 libwebp7_1.3.2-0.4build3 libwebpdemux2_1.3.2-0.4build3 libwebpmux3_1.3.2-0.4build3 libx11-6_2:1.8.7-1build1 libx11-data_2:1.8.7-1build1 libxau6_1:1.0.9-1build6 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu6 libxext6_2:1.3.4-1build2 libxml2_2.9.14+dfsg-1.3ubuntu3 libxrender1_1:0.9.10-1.1build1 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-22.22 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 media-types_10.1.0 mount_2.39.3-9ubuntu5 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 python3_3.12.2-0ubuntu2 python3-all_3.12.2-0ubuntu2 python3-all-dev_3.12.2-0ubuntu2 python3-biopython_1.81+dfsg-3 python3-cairo_1.25.1-2build2 python3-chardet_5.2.0+dfsg-1 python3-decorator_5.1.1-5 python3-dev_3.12.2-0ubuntu2 python3-freetype_2.4.0-1 python3-minimal_3.12.2-0ubuntu2 python3-numpy_1:1.26.4+ds-6ubuntu1 python3-pil_10.2.0-1build1 python3-pkg-resources_68.1.2-2ubuntu1 python3-pyparsing_3.1.1-1 python3-reportlab_4.1.0-4 python3-rlpycairo_0.3.0-3 python3-scipy_1.11.4-6 python3-setuptools_68.1.2-2ubuntu1 python3-zombie-imp_0.0.2-2 python3.12_3.12.2-5ubuntu3 python3.12-dev_3.12.2-5ubuntu3 python3.12-minimal_3.12.2-5ubuntu3 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 sgml-base_1.31 systemd_255.4-1ubuntu7 systemd-dev_255.4-1ubuntu7 systemd-sysv_255.4-1ubuntu7 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu5 uuid-runtime_2.39.3-9ubuntu5 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build3 xml-core_0.19 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: prody Binary: python3-prody, python3-prody-tests Architecture: any all Version: 2.4.1+dfsg-2build1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://github.com/prody/ProDy Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/prody Vcs-Git: https://salsa.debian.org/debichem-team/prody.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-biopython , python3-numpy, python3-pyparsing , python3-scipy , python3-setuptools, python3-zombie-imp Package-List: python3-prody deb science optional arch=any python3-prody-tests deb science optional arch=all Checksums-Sha1: 9d0ead7d3fce8424a0c35a2396639566d5ebea77 16085288 prody_2.4.1+dfsg.orig.tar.xz 4f3fdc97e461844c9d48f7f628aaf4967076459e 9780 prody_2.4.1+dfsg-2build1.debian.tar.xz Checksums-Sha256: f66b7affa47693dd3d8cf0f0ac833c4d313135420b1e6ece0767259099f5ad87 16085288 prody_2.4.1+dfsg.orig.tar.xz 1dc6115c78d2b8aa4cfd2097c066f5d8b407feeb51b380171c1e27d3b402fc2b 9780 prody_2.4.1+dfsg-2build1.debian.tar.xz Files: 295e44486fd6cb8cbe38f64aad51439e 16085288 prody_2.4.1+dfsg.orig.tar.xz f1632775c7a70e0d15eccd8788e8065d 9780 prody_2.4.1+dfsg-2build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmYWYVAACgkQr8/sjmac 4cKwAw//Q5W00FvpksDKMtMHoT8+MhBUYjQqgP6h7IZnr6uVYK5gVsHLHlucFb54 wOYgxWOaHGW8LCCZ24QQEjntuxSl3NXBPBlJhXvQ/Qk7UMqLAWUBBBYf3N/piD3o 2vYvjHqkpxVPOj3VnDRCRqCer2WEKJ5RruPLl7/aaaYDqDL6lQYIHnkchg3whhdj RYoYANEPjB/7HTA2JXMOVnUk+Pqfga1cgqwIHr3yur6idnyG2X26Zc4S5xPf/hyi xs0PJfJqOvz6ualX7YoOgQKotmHKyPaMEyhNMpDHu+yLDNdxEOcs8DLS15OmWm8m tjBph28PtAmhQCDH54TgX/S3+OCEoPea06MspR3ZDWGbAibYVpstdcEDIy14XKNp WKXc0aooATL34zOohA3MZsDFJY2O6V9JLR2joRL4U4sI13EVz5sOxY6TB1Bzk9+5 BnibFnsh1gIyhI3MWm/AdxwZRWIqBpCPPzAcEzyFp/00ntCk9Qd9pifNI6MKnbTQ 8XjO4VQsng6rCISWcz+SXWLw3gt4wzSHerU3k1IevnDs3n8++WQ51d8gsiOQpSN3 bvuMzTQNmCxXajGEMj40EwjSH49P1ME/VKR7od+iFY1B9rIewdhuoCSBuNfljh1i +wEHctmzo55saVZBHNK4mhQPTYznivZUNSu9j9IwZjxPfteOPyE= =1/1z -----END PGP SIGNATURE----- gpgv: Signature made Wed Apr 10 09:52:16 2024 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./prody_2.4.1+dfsg-2build1.dsc: no acceptable signature found dpkg-source: info: extracting prody in /<> dpkg-source: info: unpacking prody_2.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking prody_2.4.1+dfsg-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-network-access.patch dpkg-source: info: applying add-missing-test-files.patch dpkg-source: info: applying numpy-1.24.patch dpkg-source: info: applying 1816.patch dpkg-source: info: applying skip-equals-on-vector.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28044408 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28044408 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28044408 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package prody dpkg-buildpackage: info: source version 2.4.1+dfsg-2build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild --with numpy3,python3 dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12_prody/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<>' rm -rf ProDy.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem pybuild --with numpy3,python3 dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12_prody/build/prody copying prody/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody creating /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/chain.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/crossterm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/acceptor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/donor.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/pointer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/flags.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/dihedral.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/residue.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/selection.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomgroup.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/improper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/angle.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/segment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/bond.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/nbexclusion.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/atom.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic copying prody/atomic/fields.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/pfam.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/cath.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/uniprot.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/goa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/quartataweb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database copying prody/database/dali.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/database creating /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/vmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/perturb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/heatmapper.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/entropy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bildfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/rtb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/imanm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mode.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/sampling.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/gamma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/modeset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/mechstiff.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nmdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/bbenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/adaptive.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/nma.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/exgnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/essa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics copying prody/dynamics/anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble copying prody/ensemble/pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree copying prody/kdtree/kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure copying prody/measure/transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/blastpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/fixer.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbclusters.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/stride.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/starfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/waterbridges.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/compare.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/cifheader.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/emdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins copying prody/proteins/pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/plotting.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence copying prody/sequence/sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajectory.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/psffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajbase.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory copying prody/trajectory/trajfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/hic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/norm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/cluster.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin copying prody/chromatin/straw.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/chromatin creating /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/ccd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/pdbligands.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds copying prody/compounds/bird.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/compounds creating /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/eigtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/catchall.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/settings.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/legacy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/TreeConstruction.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/doctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/drawtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/logger.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/laptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities copying prody/utilities/seqtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps copying prody/apps/apptools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests copying prody/tests/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_select.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_measure.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_transform.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure copying prody/tests/measure/test_contacts.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/measure creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_header.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory creating /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/__init__.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities creating /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/prody creating build/temp.linux-aarch64-cpython-312/prody/dynamics aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-aarch64-cpython-312/prody/dynamics/rtbtools.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/rtbtools.cpython-312-aarch64-linux-gnu.so building 'prody.dynamics.smtools' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-aarch64-cpython-312/prody/dynamics/smtools.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/dynamics/smtools.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/smtools.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-aarch64-cpython-312/prody/sequence aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/msatools.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/sequence/msatools.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msatools.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.msaio' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/msaio.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/sequence/msaio.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/msaio.cpython-312-aarch64-linux-gnu.so building 'prody.sequence.seqtools' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-aarch64-cpython-312/prody/sequence/seqtools.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/sequence/seqtools.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/seqtools.cpython-312-aarch64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-aarch64-cpython-312/prody/kdtree aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTree.o aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTreemodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-aarch64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-aarch64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-aarch64-cpython-312/prody/proteins creating build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/prody-2.4.1+dfsg-2build1 -Wdate-time -D_FORTIFY_SOURCE=3 build/temp.linux-aarch64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib/aarch64-linux-gnu -o /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/ccealign.cpython-312-aarch64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:311: cd /<>/.pybuild/cpython3_3.12_prody/build; python3.12 -m unittest discover -v /<>/.pybuild/cpython3_3.12_prody/build/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' """Returns wrapped lines from :func:`textwrap.wrap` after *join*\ing them. /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' __doc__ += """ /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' """This module defines a class for selecting subsets of atoms. You can read /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' RE_SCHARS = re_compile('`[\w\W]*?`') /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' RE_REGEXP = re_compile('"[\w\W]*"') /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' _ = '[-+]?\d+(\.\d*)?([eE]\d+)?' /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' RE_NRANGE = re_compile(_ + '\ *(to|:)\ *' + _) /<>/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' pp.Optional(pp.Regex('(\ *:\ *' + _ + ')'))) /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' """Apply one of the normalizations discussed in [MLC05]_ to *mutinfo* /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)(\.gz)?$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)\.gz$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' pdbext = compile('\.(pdb|ent)$', IGNORECASE) /<>/.pybuild/cpython3_3.12_prody/build/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' """Parse DSSP data from file *dssp* into :class:`.AtomGroup` instance /<>/.pybuild/cpython3_3.12_prody/build/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' """Build a covariance matrix for *coordsets* using mean coordinates prody.tests.apps.test_prody_anm (unittest.loader._FailedTest.prody.tests.apps.test_prody_anm) ... ERROR prody.tests.apps.test_prody_catdcd (unittest.loader._FailedTest.prody.tests.apps.test_prody_catdcd) ... ERROR prody.tests.apps.test_prody_examples (unittest.loader._FailedTest.prody.tests.apps.test_prody_examples) ... ERROR prody.tests.apps.test_prody_gnm (unittest.loader._FailedTest.prody.tests.apps.test_prody_gnm) ... ERROR prody.tests.apps.test_prody_pca (unittest.loader._FailedTest.prody.tests.apps.test_prody_pca) ... ERROR testAtomGroup (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomGroup) ... ok testAtomMap (prody.tests.atomic.test_atomic.TestAtomIterations.testAtomMap) ... ok testChain (prody.tests.atomic.test_atomic.TestAtomIterations.testChain) ... ok testResidue (prody.tests.atomic.test_atomic.TestAtomIterations.testResidue) ... ok testSelection (prody.tests.atomic.test_atomic.TestAtomIterations.testSelection) ... ok testAtom (prody.tests.atomic.test_atomic.TestPickling.testAtom) ... ok testAtomGroup (prody.tests.atomic.test_atomic.TestPickling.testAtomGroup) ... ok testSelection (prody.tests.atomic.test_atomic.TestPickling.testSelection) ... ok testSaveLoad (prody.tests.atomic.test_atomic.TestSaveLoad.testSaveLoad) ... ok testInstantiation (prody.tests.atomic.test_atommap.TestInstantiation.testInstantiation) ... ok testAllSelection (prody.tests.atomic.test_atommap.TestSelection.testAllSelection) ... ok testChainSelection (prody.tests.atomic.test_atommap.TestSelection.testChainSelection) ... ok testGetBoolArray (prody.tests.atomic.test_atommap.TestSelection.testGetBoolArray) ... ok testNameSelection (prody.tests.atomic.test_atommap.TestSelection.testNameSelection) ... ok testSplit (prody.tests.atomic.test_fragment.TestFragment.testSplit) ... ok testSplitCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitCopy) ... ok testSplitNoh (prody.tests.atomic.test_fragment.TestFragment.testSplitNoh) ... ok testSplitNohCopy (prody.tests.atomic.test_fragment.TestFragment.testSplitNohCopy) ... ok testWhole (prody.tests.atomic.test_fragment.TestFragment.testWhole) ... ok testWhole2 (prody.tests.atomic.test_fragment.TestFragment.testWhole2) ... ok testWholeAll (prody.tests.atomic.test_fragment.TestFragment.testWholeAll) ... ok testWholeCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeCopy) ... ok testWholeNoh (prody.tests.atomic.test_fragment.TestFragment.testWholeNoh) ... ok testWholeNohCopy (prody.tests.atomic.test_fragment.TestFragment.testWholeNohCopy) ... ok testCA (prody.tests.atomic.test_hierview.TestShuffled.testCA) ... ok testProtein (prody.tests.atomic.test_hierview.TestShuffled.testProtein) ... ok testNumResidues (prody.tests.atomic.test_hierview.TestTerRecord.testNumResidues) ... ok testResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testResidueIndexing) ... ok testSelectionResidueIndexing (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing) ... ok testSelectionResidueIndexing2 (prody.tests.atomic.test_hierview.TestTerRecord.testSelectionResidueIndexing2) ... ok prody.tests.atomic.test_select (unittest.loader._FailedTest.prody.tests.atomic.test_select) ... ERROR testSetData (prody.tests.atomic.test_subset.TestUserData.testSetData) ... ok testDatafile_1ejg (prody.tests.datafiles.TestDatafiles.testDatafile_1ejg) Test presence of "pdb1ejg.pdb" ... ok testDatafile_1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi) Test presence of "pdb1ubi.pdb" ... ok testDatafile_1ubi_ca (prody.tests.datafiles.TestDatafiles.testDatafile_1ubi_ca) Test presence of "pdb1ubi_ca.pdb" ... ok testDatafile_2gb1_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_2gb1_truncated) Test presence of "pdb2gb1_truncated.pdb" ... ok testDatafile_2k39_ca (prody.tests.datafiles.TestDatafiles.testDatafile_2k39_ca) Test presence of "pdb2k39_ca.pdb" ... ok testDatafile_2nwl (prody.tests.datafiles.TestDatafiles.testDatafile_2nwl) Test presence of "pdb2nwl-opm.pdb" ... ok testDatafile_3hsy (prody.tests.datafiles.TestDatafiles.testDatafile_3hsy) Test presence of "pdb3hsy.pdb" ... ok testDatafile_3mht (prody.tests.datafiles.TestDatafiles.testDatafile_3mht) Test presence of "pdb3mht.pdb" ... ok testDatafile_3o21 (prody.tests.datafiles.TestDatafiles.testDatafile_3o21) Test presence of "pdb3o21.pdb" ... ok testDatafile_3p3w (prody.tests.datafiles.TestDatafiles.testDatafile_3p3w) Test presence of "pdb3p3w.pdb" ... ok testDatafile_DI (prody.tests.datafiles.TestDatafiles.testDatafile_DI) Test presence of "msa_Cys_knot_di.dat" ... ok testDatafile_Fasta (prody.tests.datafiles.TestDatafiles.testDatafile_Fasta) Test presence of "msa_Cys_knot.fasta" ... ok testDatafile_MSA (prody.tests.datafiles.TestDatafiles.testDatafile_MSA) Test presence of "msa_3hsyA_3o21A.fasta" ... ok testDatafile_MSA_MEW (prody.tests.datafiles.TestDatafiles.testDatafile_MSA_MEW) Test presence of "msa_3hsyA_3o21A_new.fasta" ... ok testDatafile_RTER (prody.tests.datafiles.TestDatafiles.testDatafile_RTER) Test presence of "pdbRTER.pdb" ... ok testDatafile_SCA (prody.tests.datafiles.TestDatafiles.testDatafile_SCA) Test presence of "msa_Cys_knot_sca.dat" ... ok testDatafile_Selex (prody.tests.datafiles.TestDatafiles.testDatafile_Selex) Test presence of "msa_Cys_knot.slx" ... ok testDatafile_Stockholm (prody.tests.datafiles.TestDatafiles.testDatafile_Stockholm) Test presence of "msa_Cys_knot.sth" ... ok testDatafile_anm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_evalues) Test presence of "anm1ubi_evalues.dat" ... ok testDatafile_anm1ubi_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_hessian) Test presence of "anm1ubi_hessian.coo" ... ok testDatafile_anm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_anm1ubi_vectors) Test presence of "anm1ubi_vectors.dat" ... ok testDatafile_commute1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_commute1ubi) Test presence of "commute1ubi.dat" ... ok testDatafile_dcd (prody.tests.datafiles.TestDatafiles.testDatafile_dcd) Test presence of "dcd2k39_truncated.dcd" ... ok testDatafile_dssp (prody.tests.datafiles.TestDatafiles.testDatafile_dssp) Test presence of "pdb1r19_dssp.pdb" ... ok testDatafile_five_digits (prody.tests.datafiles.TestDatafiles.testDatafile_five_digits) Test presence of "pdb1tw7_step3_charmm2namd.pdb" ... ok testDatafile_gnm1ubi_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_evalues) Test presence of "gnm1ubi_evalues.dat" ... ok testDatafile_gnm1ubi_kirchhoff (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_kirchhoff) Test presence of "gnm1ubi_kirchhoff.coo" ... ok testDatafile_gnm1ubi_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_gnm1ubi_vectors) Test presence of "gnm1ubi_vectors.dat" ... ok testDatafile_gromacs (prody.tests.datafiles.TestDatafiles.testDatafile_gromacs) Test presence of "pdb6fpj_Bb_fixed_solv_ions.pdb" ... ok testDatafile_h36 (prody.tests.datafiles.TestDatafiles.testDatafile_h36) Test presence of "pdb1tw7_step3_charmm2namd_doubled_h36.pdb" ... ok testDatafile_h36_ter (prody.tests.datafiles.TestDatafiles.testDatafile_h36_ter) Test presence of "pdb4v8r_h36.pdb" ... ok testDatafile_hex (prody.tests.datafiles.TestDatafiles.testDatafile_hex) Test presence of "pdb1tw7_step3_charmm2namd_doubled_hex.pdb" ... ok testDatafile_hex_ter (prody.tests.datafiles.TestDatafiles.testDatafile_hex_ter) Test presence of "pdb4v8r_hex.pdb" ... ok testDatafile_hit1ubi (prody.tests.datafiles.TestDatafiles.testDatafile_hit1ubi) Test presence of "hit1ubi.dat" ... ok testDatafile_long_chid_cif (prody.tests.datafiles.TestDatafiles.testDatafile_long_chid_cif) Test presence of "mmcif_6zu5.cif" ... ok testDatafile_multi_model_cif (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_cif) Test presence of "mmcif_6yfy.cif" ... ok testDatafile_multi_model_truncated (prody.tests.datafiles.TestDatafiles.testDatafile_multi_model_truncated) Test presence of "pdb2k39_truncated.pdb" ... ok testDatafile_oneatom (prody.tests.datafiles.TestDatafiles.testDatafile_oneatom) Test presence of "pdb1ejg_oneatom.pdb" ... ok testDatafile_pca2k39_cov (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_cov) Test presence of "pca2k39_cov.coo" ... ok testDatafile_pca2k39_evalues (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_evalues) Test presence of "pca2k39_evalues.dat" ... ok testDatafile_pca2k39_vectors (prody.tests.datafiles.TestDatafiles.testDatafile_pca2k39_vectors) Test presence of "pca2k39_vectors.dat" ... ok testDatafile_rtb2gb1_hessian (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_hessian) Test presence of "rtb2gb1_hessian.coo" ... ok testDatafile_rtb2gb1_project (prody.tests.datafiles.TestDatafiles.testDatafile_rtb2gb1_project) Test presence of "rtb2gb1_project.coo" ... ok testDatafile_sti (prody.tests.datafiles.TestDatafiles.testDatafile_sti) Test presence of "xmlSTI.xml" ... ok testMode1d (prody.tests.dynamics.test_editing.TestExtending.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestExtending.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestExtending.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestExtending.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestExtending.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestExtending.testVector3d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestInterpolating.testModel3d) ... ok testMode1d (prody.tests.dynamics.test_editing.TestSlicing.testMode1d) ... ok testMode3d (prody.tests.dynamics.test_editing.TestSlicing.testMode3d) ... ok testModel1d (prody.tests.dynamics.test_editing.TestSlicing.testModel1d) ... ok testModel3d (prody.tests.dynamics.test_editing.TestSlicing.testModel3d) ... ok testVector1d (prody.tests.dynamics.test_editing.TestSlicing.testVector1d) ... ok testVector3d (prody.tests.dynamics.test_editing.TestSlicing.testVector3d) ... ok prody.tests.dynamics.test_enms (unittest.loader._FailedTest.prody.tests.dynamics.test_enms) ... ERROR prody.tests.dynamics.test_pca (unittest.loader._FailedTest.prody.tests.dynamics.test_pca) ... ERROR testSlicing (prody.tests.dynamics.test_signature.TestSDArray.testSlicing) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestConformation.testGetIndex) Test get index function. ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestConformation.testGetNumAtoms) Test get index function. ... ok testWeights (prody.tests.ensemble.test_conformation.TestConformation.testWeights) ... ok testCoordinates (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinates) ... ok testCoordinatesForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testCoordinatesForAll) ... ok testGetIndex (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetIndex) ... ok testGetNumAtoms (prody.tests.ensemble.test_conformation.TestPDBConformation.testGetNumAtoms) ... ok testWeights (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeights) ... ok testWeightsForAll (prody.tests.ensemble.test_conformation.TestPDBConformation.testWeightsForAll) ... ok testConcatenation (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenation) Test concatenation of ensembles without weights. ... ok testConcatenationNoweightsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationNoweightsWeights) Test concatenation of ensembles without and with weights. ... ok testConcatenationWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeights) Test concatenation of ensembles with weights. ... ok testConcatenationWeightsNoweights (prody.tests.ensemble.test_ensemble.TestEnsemble.testConcatenationWeightsNoweights) Test concatenation of ensembles with and without weights. ... ok testDelCoordsetAll (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetAll) ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_ensemble.TestEnsemble.testDelCoordsetMiddle) ... ok testGetCoordinates (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordinates) Test correctness of reference coordinates. ... ok testGetCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetCoordsets) Test correctness of all coordinates. ... ok testGetNumAtoms (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetNumCsets) ... ok testGetRMSDs (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDs) ... ok testGetRMSDsWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetRMSDsWeights) ... ok testGetWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testGetWeights) Test correctness of all weights. ... ok testIterCoordsets (prody.tests.ensemble.test_ensemble.TestEnsemble.testIterCoordsets) Test coordinate iteration. ... ok testSelection (prody.tests.ensemble.test_ensemble.TestEnsemble.testSelection) Test atom selection of ensemble. ... ok testSlicing (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicing) Test slicing operation. ... ok testSlicingCopy (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingCopy) Test making a copy by slicing operation. ... ok testSlicingList (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingList) Test slicing with a list. ... ok testSlicingWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSlicingWeights) Test slicing operation with weights. ... ok testSuperpose (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperpose) ... ok testSuperposeWeights (prody.tests.ensemble.test_ensemble.TestEnsemble.testSuperposeWeights) ... ok testResults (prody.tests.ensemble.test_functions.TestBuildPDBEnsemble.testResults) ... ok testInvalidType (prody.tests.ensemble.test_functions.TestCalcOccupancies.testInvalidType) ... ok testResults (prody.tests.ensemble.test_functions.TestCalcOccupancies.testResults) ... ok testWeightsNone (prody.tests.ensemble.test_functions.TestCalcOccupancies.testWeightsNone) ... ok testResults (prody.tests.ensemble.test_functions.TestTrimPDBEnsemble.testResults) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py:52: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return self._array.tostring().decode() ok testAddCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testAddCoordsets) ... ok testConcatenation (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testConcatenation) Test concatenation of PDB ensembles. ... ok testDelCoordsetAll (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetAll) Test consequences of deleting all coordinate sets. ... ok testDelCoordsetMiddle (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddle) ... ok testDelCoordsetMiddleTrans (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testDelCoordsetMiddleTrans) ... ok testGetCoordinates (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordinates) ... ok testGetCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetCoordsets) ... ok testGetNumAtoms (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumAtoms) ... ok testGetNumCsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetNumCsets) ... ok testGetWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testGetWeights) ... ok testIterCoordsets (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testIterCoordsets) ... ok testSlicing (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicing) ... ok testSlicingCopy (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingCopy) ... ok testSlicingList (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingList) ... ok testSlicingWeights (prody.tests.ensemble.test_pdbensemble.TestPDBEnsemble.testSlicingWeights) ... ok testAllSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testAllSearch) ... ok testSearch (prody.tests.kdtree.test_kdtree.TestKDTree.testSearch) ... ok testPairNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairNoPBC) ... ok testPairPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPairPBC) ... ok testPointNoPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointNoPBC) ... ok testPointPBC (prody.tests.kdtree.test_kdtree.TestKDTreePBC.testPointPBC) ... ok testMINvsMAX (prody.tests.measure.test_contacts.TestContacts.testMINvsMAX) ... ok testPBCvsNONE (prody.tests.measure.test_contacts.TestContacts.testPBCvsNONE) ... ok testAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testAtomicArgumentSwitching) ... ok testCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testCoordArgumentSwitching) ... ok testNoPBC (prody.tests.measure.test_contacts.TestNeighbors.testNoPBC) ... ok testPBC (prody.tests.measure.test_contacts.TestNeighbors.testPBC) ... ok testPBCAtomicArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCAtomicArgumentSwitching) ... ok testPBCCoordArgumentSwitching (prody.tests.measure.test_contacts.TestNeighbors.testPBCCoordArgumentSwitching) ... ok testCenter (prody.tests.measure.test_measure.TestCenter.testCenter) ... ok testCenterWithWeights (prody.tests.measure.test_measure.TestCenter.testCenterWithWeights) ... ok testMultiCoordsets (prody.tests.measure.test_measure.TestCenter.testMultiCoordsets) ... ok testMultiCoordsetsWithWeights (prody.tests.measure.test_measure.TestCenter.testMultiCoordsetsWithWeights) ... ok testCTerPhi (prody.tests.measure.test_measure.TestDihedrals.testCTerPhi) ... ok testCTerPsi (prody.tests.measure.test_measure.TestDihedrals.testCTerPsi) ... ok testCalcPhi (prody.tests.measure.test_measure.TestDihedrals.testCalcPhi) ... ok testCalcPsi (prody.tests.measure.test_measure.TestDihedrals.testCalcPsi) ... ok testNTerPhi (prody.tests.measure.test_measure.TestDihedrals.testNTerPhi) ... ok testNTerPsi (prody.tests.measure.test_measure.TestDihedrals.testNTerPsi) ... ok testPBC (prody.tests.measure.test_measure.TestDistances.testPBC) ... ok testPBCSymmetry (prody.tests.measure.test_measure.TestDistances.testPBCSymmetry) ... ok testMSF (prody.tests.measure.test_measure.TestMSF.testMSF) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:273: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead xyz = fromstring(self._file.read(self._itemsize * n_floats), /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:320: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead data = fromstring(data, self._dtype) /<>/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py:294: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead unitcell = fromstring(self._file.read(48), dtype=np.float64) ok testMSFfloat (prody.tests.measure.test_measure.TestMSF.testMSFfloat) ... ok testByArgument (prody.tests.measure.test_transform.TestMoveAtoms.testByArgument) ... ok testToArgument (prody.tests.measure.test_transform.TestMoveAtoms.testToArgument) ... ok testTransformation (prody.tests.measure.test_transform.TestMoveAtoms.testTransformation) ... ok testWrap (prody.tests.measure.test_transform.TestWrapAtoms.testWrap) ... ok prody.tests.proteins.test_ciffile (unittest.loader._FailedTest.prody.tests.proteins.test_ciffile) ... ERROR prody.tests.proteins.test_dssp (unittest.loader._FailedTest.prody.tests.proteins.test_dssp) ... ERROR testHeaderContent (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderContent) ... ok testHeaderType (prody.tests.proteins.test_header.TestParsePDBHeaderOnly.testHeaderType) ... ok prody.tests.proteins.test_localpdb (unittest.loader._FailedTest.prody.tests.proteins.test_localpdb) ... ERROR prody.tests.proteins.test_pdbfile (unittest.loader._FailedTest.prody.tests.proteins.test_pdbfile) ... ERROR prody.tests.proteins.test_wwpdb (unittest.loader._FailedTest.prody.tests.proteins.test_wwpdb) ... ERROR testBuildMSAlocal (prody.tests.sequence.test_analysis.TestBuildMSA.testBuildMSAlocal) ... ok testResidueCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueCount) ... ok testResidueOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testResidueOccupancy) ... ok testSequenceCount (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceCount) ... ok testSequenceOccupancy (prody.tests.sequence.test_analysis.TestCalcMSAOccupancy.testSequenceOccupancy) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcMeff.testMATLAB) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMeff.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMeff.testTwentyReversed) ... ok testZero1 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestCalcMeff.testZero2) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testAmbiguity7) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNoAmbiguity) ... ok testNorm (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm) ... ok testNorm2 (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testNorm2) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testSixSequences) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcMutualInfo.testTwentyReversed) ... ok testAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity) ... ok testAmbiguity2 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity2) ... ok testAmbiguity3 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity3) ... ok testAmbiguity4 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity4) ... ok testAmbiguity5 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity5) ... ok testAmbiguity6 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity6) ... ok testAmbiguity7 (prody.tests.sequence.test_analysis.TestCalcOMES.testAmbiguity7) ... ok testFourSequences (prody.tests.sequence.test_analysis.TestCalcOMES.testFourSequences) ... ok testInf (prody.tests.sequence.test_analysis.TestCalcOMES.testInf) ... ok testNoAmbiguity (prody.tests.sequence.test_analysis.TestCalcOMES.testNoAmbiguity) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcOMES.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestCalcOMES.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcOMES.testZero) ... ok testMATLAB (prody.tests.sequence.test_analysis.TestCalcSCA.testMATLAB) ... ok testZero (prody.tests.sequence.test_analysis.TestCalcSCA.testZero) ... ok testAmbiguous (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testAmbiguous) ... ok testGapDividend (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testGapDividend) ... ok testSixSequences (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSixSequences) ... ok testSmallProbability (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testSmallProbability) ... ok testTwenty (prody.tests.sequence.test_analysis.TestCalcShannonEntropy.testTwenty) ... ok testMATLAB10 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB10) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:592: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. c = matrix.dot(matrix(zeros((length*q, 1), float)), /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/analysis.py:593: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. matrix(zeros((1, length*q), float))) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:70: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) ok testMATLAB8 (prody.tests.sequence.test_analysis.TestDirectInfo.testMATLAB8) ... ok testTwenty (prody.tests.sequence.test_analysis.TestDirectInfo.testTwenty) ... ok testTwentyReversed (prody.tests.sequence.test_analysis.TestDirectInfo.testTwentyReversed) ... ok testZero (prody.tests.sequence.test_analysis.TestDirectInfo.testZero) ... ok testZero1 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero1) ... ok testZero2 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero2) ... ok testZero3 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero3) ... ok testZero4 (prody.tests.sequence.test_analysis.TestDirectInfo.testZero4) ... ok testIdentityMatrix (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrix) ... ok testIdentityMatrixNonTurbo (prody.tests.sequence.test_analysis.TestIdentity.testIdentityMatrixNonTurbo) ... ok testUnique (prody.tests.sequence.test_analysis.TestUnique.testUnique) ... ok testUnique2 (prody.tests.sequence.test_analysis.TestUnique.testUnique2) ... ok testMerge (prody.tests.sequence.test_msa.TestMerging.testMerge) ... ok testAddition (prody.tests.sequence.test_msa.TestRefinement.testAddition) ... ok testAll (prody.tests.sequence.test_msa.TestRefinement.testAll) ... ok testColocc (prody.tests.sequence.test_msa.TestRefinement.testColocc) ... ok testExtension (prody.tests.sequence.test_msa.TestRefinement.testExtension) ... ok testLabel (prody.tests.sequence.test_msa.TestRefinement.testLabel) ... ok testRowCol (prody.tests.sequence.test_msa.TestRefinement.testRowCol) ... ok testRowocc (prody.tests.sequence.test_msa.TestRefinement.testRowocc) ... ok testSeqid (prody.tests.sequence.test_msa.TestRefinement.testSeqid) ... ok testSeqidLabel (prody.tests.sequence.test_msa.TestRefinement.testSeqidLabel) ... ok prody.tests.sequence.test_msafile (unittest.loader._FailedTest.prody.tests.sequence.test_msafile) ... ERROR testStringConversion (prody.tests.sequence.test_sequence.TestSequence.testStringConversion) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/sequence/sequence.py:36: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead self._seq = fromstring(args[0], '|S1') ok testParseDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testParseDCD) ... ok testWrite (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWrite) ... ok testWriteDCD (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteDCD) ... ok testWriteModeAppend (prody.tests.trajectory.test_dcdfile.TestDCDFile.testWriteModeAppend) ... ok testAll (prody.tests.trajectory.test_frame.TestSuperpose.testAll) ... ok testCarbon (prody.tests.trajectory.test_frame.TestSuperpose.testCarbon) ... ok testCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testCoords) ... ok testCoordset (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordset) ... ok testCoordsetNatoms (prody.tests.utilities.test_checkers.TestCheckCoords.testCoordsetNatoms) ... ok testInvalidCoords (prody.tests.utilities.test_checkers.TestCheckCoords.testInvalidCoords) ... ok testCorrectMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeOneArg) ... ok testCorrectMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMonotypeTwoArgs) ... ok testCorrectMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testCorrectMultitypeOneArg) ... ok testWrongMonotypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeOneArg) ... ok testWrongMonotypeTwoArgs (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMonotypeTwoArgs) ... ok testWrongMultitypeOneArg (prody.tests.utilities.test_checkers.testCheckTypes.testWrongMultitypeOneArg) ... ok testContinuous (prody.tests.utilities.test_misctools.TestRangeString.testContinuous) ... ok testGapped (prody.tests.utilities.test_misctools.TestRangeString.testGapped) ... ok testNegative (prody.tests.utilities.test_misctools.TestRangeString.testNegative) ... ok testRepeated (prody.tests.utilities.test_misctools.TestRangeString.testRepeated) ... ok testBuffer (prody.tests.utilities.test_pathtools.TestGunzip.testBuffer) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py:34: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/compressed.txt.gz'> buff = open(self.gzfn, 'rb').read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFile (prody.tests.utilities.test_pathtools.TestGunzip.testFile) ... /<>/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_pathtools.py:29: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/compressed.txt' mode='r' encoding='UTF-8'> text = open(fn).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok ====================================================================== ERROR: prody.tests.apps.test_prody_anm (unittest.loader._FailedTest.prody.tests.apps.test_prody_anm) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.apps.test_prody_anm Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_anm.py", line 9, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_anm.py", line 11, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.apps.test_prody_catdcd (unittest.loader._FailedTest.prody.tests.apps.test_prody_catdcd) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.apps.test_prody_catdcd Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_catdcd.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_catdcd.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.apps.test_prody_examples (unittest.loader._FailedTest.prody.tests.apps.test_prody_examples) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.apps.test_prody_examples Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_examples.py", line 10, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_examples.py", line 12, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.apps.test_prody_gnm (unittest.loader._FailedTest.prody.tests.apps.test_prody_gnm) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.apps.test_prody_gnm Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_gnm.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_gnm.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.apps.test_prody_pca (unittest.loader._FailedTest.prody.tests.apps.test_prody_pca) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.apps.test_prody_pca Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_pca.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/apps/test_prody_pca.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.atomic.test_select (unittest.loader._FailedTest.prody.tests.atomic.test_select) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.atomic.test_select Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_select.py", line 9, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic/test_select.py", line 11, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.dynamics.test_enms (unittest.loader._FailedTest.prody.tests.dynamics.test_enms) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.dynamics.test_enms Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py", line 7, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py", line 9, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.dynamics.test_pca (unittest.loader._FailedTest.prody.tests.dynamics.test_pca) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.dynamics.test_pca Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_pca.py", line 7, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_pca.py", line 9, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.proteins.test_ciffile (unittest.loader._FailedTest.prody.tests.proteins.test_ciffile) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.proteins.test_ciffile Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_ciffile.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_ciffile.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.proteins.test_dssp (unittest.loader._FailedTest.prody.tests.proteins.test_dssp) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.proteins.test_dssp Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_dssp.py", line 5, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_dssp.py", line 7, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.proteins.test_localpdb (unittest.loader._FailedTest.prody.tests.proteins.test_localpdb) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.proteins.test_localpdb Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_localpdb.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_localpdb.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.proteins.test_pdbfile (unittest.loader._FailedTest.prody.tests.proteins.test_pdbfile) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.proteins.test_pdbfile Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_pdbfile.py", line 8, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_pdbfile.py", line 10, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.proteins.test_wwpdb (unittest.loader._FailedTest.prody.tests.proteins.test_wwpdb) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.proteins.test_wwpdb Traceback (most recent call last): File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_wwpdb.py", line 7, in import numpy.testing.decorators as dec ModuleNotFoundError: No module named 'numpy.testing.decorators' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins/test_wwpdb.py", line 9, in from numpy.testing import dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ====================================================================== ERROR: prody.tests.sequence.test_msafile (unittest.loader._FailedTest.prody.tests.sequence.test_msafile) ---------------------------------------------------------------------- ImportError: Failed to import test module: prody.tests.sequence.test_msafile Traceback (most recent call last): File "/usr/lib/python3.12/unittest/loader.py", line 394, in _find_test_path module = self._get_module_from_name(name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/unittest/loader.py", line 337, in _get_module_from_name __import__(name) File "/<>/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_msafile.py", line 8, in from numpy.testing import assert_array_equal, dec ImportError: cannot import name 'dec' from 'numpy.testing' (/usr/lib/python3/dist-packages/numpy/testing/__init__.py). Did you mean: 'rec'? ---------------------------------------------------------------------- Ran 279 tests in 52.269s FAILED (errors=14) E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /<>/.pybuild/cpython3_3.12_prody/build; python3.12 -m unittest discover -v dh_auto_test: error: pybuild --test -i python{version} -p 3.12 returned exit code 13 make: *** [debian/rules:6: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-04-10T21:58:14Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 212352 Build-Time: 119 Distribution: noble-proposed Fail-Stage: build Host Architecture: arm64 Install-Time: 174 Job: prody_2.4.1+dfsg-2build1.dsc Machine Architecture: arm64 Package: prody Package-Time: 299 Source-Version: 2.4.1+dfsg-2build1 Space: 212352 Status: attempted Version: 2.4.1+dfsg-2build1 -------------------------------------------------------------------------------- Finished at 2024-04-10T21:58:14Z Build needed 00:04:59, 212352k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-28044408 Scanning for processes to kill in build PACKAGEBUILD-28044408