openms 2.6.0+cleaned1-3build1 source package in Ubuntu

Changelog

openms (2.6.0+cleaned1-3build1) jammy; urgency=medium

  * No-change rebuild against libboost-regex1.74.0-icu70.

 -- Matthias Klose <email address hidden>  Thu, 10 Feb 2022 16:02:29 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Jammy
Original maintainer:
Debichem Team
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
openms_2.6.0+cleaned1.orig.tar.gz 203.4 MiB c58c12b00c14d22d548839c0d074a76e4884308e2cb23add3bfc1a04cebbf0af
openms_2.6.0+cleaned1-3build1.debian.tar.xz 753.7 KiB 2764a4ad4d208cb96900bd45114229b824404d6336b3fbb539e80a03b232f2e0
openms_2.6.0+cleaned1-3build1.dsc 2.9 KiB 2c95f6a90728282735ec6ae98ada5d923d2083c9241bfbc6796eca6f76b3f857

View changes file

Binary packages built by this source

libopenms-dev: library for LC/MS data management and analysis - dev files

 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package ships the library development files.

libopenms2.6.0: library for LC/MS data management and analysis - runtime

 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.

libopenms2.6.0-dbgsym: debug symbols for libopenms2.6.0
openms: package for LC/MS data management and analysis

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem.
 .
 This package is a metapackage that depends on both the libopenms
 library package (libOpenMS and libOpenMS_GUI) and the OpenMS
 Proteomic Pipeline (topp) package.

openms-common: No summary available for openms-common in ubuntu kinetic.

No description available for openms-common in ubuntu kinetic.

openms-doc: No summary available for openms-doc in ubuntu kinetic.

No description available for openms-doc in ubuntu kinetic.

topp: set of programs implementing The OpenMS Proteomic Pipeline

 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem. The applications make use of the libopenms
 library. Some examples of these applications are :
 .
   - TOPPView: A viewer for mass spectrometry data.
   - TOPPAS: An assistant for GUI-driven TOPP workflow design.
   - DTAExtractor: Extracts spectra of an MS run file to several
     files in DTA format.
   - FileConverter: Converts between different MS file formats.
   - FileFilter: Extracts or manipulates portions of data from peak,
     feature or consensus feature files.
   - SpectraMerger: Merges spectra from an LC/MS map, either by
     precursor or by RT blocks.
   - BaselineFilter: Removes the baseline from profile spectra using a
     top-hat filter.
   - InternalCalibration: Applies an internal calibration.
   - PTModel: Trains a model for the prediction of proteotypic
     peptides from a training set.
   - RTPredict: Predicts retention times for peptides using a model
     trained by RTModel.
   - ExecutePipeline: Executes workflows created by TOPPAS.

topp-dbgsym: debug symbols for topp