macs 3.0.1-1 source package in Ubuntu
Changelog
macs (3.0.1-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version. Closes: #1056813 * New Build-Depends: python3-cykhash, python3-hmmlearn * Fix location of simde header * No runtime dependency from cython Closes: #1057991 [ Michael R. Crusoe ] * New upstream version * Refreshed patches. * d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h * d/clean: remove temp/ directory leftover from test execution. Closes: #1047612 * d/rules: s/MACS2/MACS3/g for new major version. * d/patches/simde: doesn't need forwarding * d/control: build dep on newer packaging version of cykhash to pick up Python 3.12 support. * d/control: build dep on newer packaging version of hmmlearn to pick up Python 3.12 support. * d/rules: choose a better path to the launch script for testing TODO: cmdline test failures: 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak 16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak 16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak * d/patch/no_install_depends_cython.patch removed, applied upstream. * add patch to force the use of Python3. * d/control: add build-dep on bc for the tests. * d/patches/adapt_to_prelease_hmmlearn.patch: patch from the upstream author to match the prelease version of hmmlearn in the archive. * d/patches/invalid_escape_sequence: fix a SyntaxWarning. -- Michael R. Crusoe <email address hidden> Sat, 24 Feb 2024 12:56:15 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
---|
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
macs_3.0.1-1.dsc | 2.1 KiB | 8300826bd696ab31c81fe4bdb7924578d366d210d8a0960f5731d54cda4b5474 |
macs_3.0.1.orig.tar.gz | 188.3 MiB | 8a2f5b2dccfc255ea2fd5e54e0d6aa9c12f5ce83762b17b779ce2546ade860ce |
macs_3.0.1-1.debian.tar.xz | 1.2 MiB | 0bed7d298871d11a808af98252edc89e68e2ab1364a8b7de56b54e0f7e0173be |
Available diffs
No changes file available.
Binary packages built by this source
- macs: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
- macs-dbgsym: debug symbols for macs