kraken 0.10.5~beta-6 source package in Ubuntu
Changelog
kraken (0.10.5~beta-6) unstable; urgency=medium
* Build-Depends: jellyfish1
* Architecture: any
It has turned out that despite beeing dead upstream jellyfish1 was
portable to several other architectures by a simple patch (see #874549)
so kraken can be provided for more architectures now.
-- Andreas Tille <email address hidden> Sat, 09 Sep 2017 22:08:16 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| kraken_0.10.5~beta-6.dsc | 2.0 KiB | ac620493e4800504548629182dbda66ebff002cf4efe638d8905964597bcdabc |
| kraken_0.10.5~beta.orig.tar.gz | 67.6 KiB | 7c0ac64ee0acdcce18e16b51b636b7cdc6d07ea7ab465bb64df078c5a710346b |
| kraken_0.10.5~beta-6.debian.tar.xz | 328.3 KiB | 42bf52f6df3315a8a282ee8023e590b82800bc27c4912471b13f299aeb45f9d8 |
Available diffs
- diff from 0.10.5~beta-5 to 0.10.5~beta-6 (656 bytes)
No changes file available.
Binary packages built by this source
- kraken: assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies. Previous
attempts by other bioinformatics software to accomplish this task have
often used sequence alignment or machine learning techniques that were
quite slow, leading to the development of less sensitive but much faster
abundance estimation programs. Kraken aims to achieve high sensitivity
and high speed by utilizing exact alignments of k-mers and a novel
classification algorithm.
.
In its fastest mode of operation, for a simulated metagenome of 100 bp
reads, Kraken processed over 4 million reads per minute on a single
core, over 900 times faster than Megablast and over 11 times faster than
the abundance estimation program MetaPhlAn. Kraken's accuracy is
comparable with Megablast, with slightly lower sensitivity and very high
precision.
- kraken-dbgsym: debug symbols for kraken
