Ubuntu
freecontact package

freecontact 1.0.21-6build2 source package in Ubuntu

Changelog

freecontact (1.0.21-6build2) bionic; urgency=medium

  * No-change rebuild for libxerces soname change.

 -- Matthias Klose <email address hidden>  Thu, 16 Nov 2017 13:05:05 +0000

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Bionic
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Downloads

File Size SHA-256 Checksum
freecontact_1.0.21.orig.tar.xz 401.0 KiB 513c503ace70abc3cbc12d1aff616ffd9b6564a73a584efd7435b804479bd2a8
freecontact_1.0.21-6build2.debian.tar.xz 5.5 KiB 1de036ce62caeb26b10366356071dcec77af7f1bd8ef62238d3feea7d0ae5633
freecontact_1.0.21-6build2.dsc 2.4 KiB 3d00b85b5dde322e324dad19714a71d8ab35b6f3b01baea74759029f9b15faba

Available diffs

View changes file

Binary packages built by this source

freecontact: fast protein contact predictor

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the command line tool freecontact(1).

freecontact-dbgsym: debug symbols for freecontact
libfreecontact-dev: fast protein contact predictor library - development files

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains files necessary for developing applications with
 libfreecontact.

libfreecontact-doc: No summary available for libfreecontact-doc in ubuntu cosmic.

No description available for libfreecontact-doc in ubuntu cosmic.

libfreecontact0v5: fast protein contact predictor library

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the shared library implementing freecontact.

libfreecontact0v5-dbgsym: debug symbols for libfreecontact0v5