https://launchpad.net/ubuntu/+source/ataqv/1.2.1+ds-1build1/+build/20400303 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-017 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:27 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 12 Dec 13:07:46 ntpdate[1614]: adjust time server 10.211.37.1 offset -0.000010 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20400303 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20400303 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20400303 Starting target for build PACKAGEBUILD-20400303 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20400303 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20400303 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20400303 Updating target for build PACKAGEBUILD-20400303 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1363 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.4 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5360 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf Packages [162 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [63.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf Packages [652 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [333 kB] Fetched 21.4 MB in 9s (2313 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 97 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 169 MB of archives. After this operation, 397 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6-dev armhf 2.32-0ubuntu5 [1580 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-dev-bin armhf 2.32-0ubuntu5 [29.6 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf linux-libc-dev armhf 5.8.0-32.34+21.04.1 [1108 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf libk5crypto3 armhf 1.17-10ubuntu1 [75.2 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi-krb5-2 armhf 1.17-10ubuntu1 [100 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-3 armhf 1.17-10ubuntu1 [286 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5support0 armhf 1.17-10ubuntu1 [27.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libssl1.1 armhf 1.1.1f-1ubuntu5 [1079 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc-dev armhf 1.2.6-3 [175 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf libtirpc3 armhf 1.2.6-3 [66.1 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libisl23 armhf 0.23-1 [513 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libcc1-0 armhf 10.2.1-1ubuntu1 [41.9 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.1-1ubuntu1 [19.4 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-s1 armhf 10.2.1-1ubuntu1 [36.3 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libgomp1 armhf 10.2.1-1ubuntu1 [87.2 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf libatomic1 armhf 10.2.1-1ubuntu1 [7252 B] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf libasan6 armhf 10.2.1-1ubuntu1 [2057 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libubsan1 armhf 10.2.1-1ubuntu1 [757 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.1-1ubuntu1 [42.7 MB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.1-1ubuntu1 [1816 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.1-1ubuntu1 [719 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.1-1ubuntu1 [45.4 MB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.1-1ubuntu1 [39.5 MB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++6 armhf 10.2.1-1ubuntu1 [441 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf0 armhf 2.35.50.20201210-0ubuntu2 [63.7 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf-nobfd0 armhf 2.35.50.20201210-0ubuntu2 [64.0 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libbinutils armhf 2.35.50.20201210-0ubuntu2 [324 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-common armhf 2.35.50.20201210-0ubuntu2 [216 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils armhf 2.35.50.20201210-0ubuntu2 [3380 B] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.35.50.20201210-0ubuntu2 [2077 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libc6 armhf 2.32-0ubuntu5 [2120 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf bash armhf 5.1-1ubuntu1 [606 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdutils armhf 1:2.36.1-1ubuntu2 [78.6 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf coreutils armhf 8.32-4ubuntu2 [1207 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf tar armhf 1.32+dfsg-1 [249 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg armhf 1.20.5ubuntu3 [1127 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf dash armhf 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [79.3 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf grep armhf 3.6-1 [143 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf login armhf 1:4.8.1-1ubuntu7 [217 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses6 armhf 6.2+20201114-1 [80.0 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf libncursesw6 armhf 6.2+20201114-1 [106 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main armhf libtinfo6 armhf 6.2+20201114-1 [74.0 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-bin armhf 6.2+20201114-1 [165 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main armhf libperl5.32 armhf 5.32.0-5 [3366 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf perl armhf 5.32.0-5 [225 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf perl-base armhf 5.32.0-5 [1423 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf util-linux armhf 2.36.1-1ubuntu2 [1005 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libdebconfclient0 armhf 0.255ubuntu1 [5692 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main armhf init-system-helpers all 1.59 [38.2 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-bin armhf 2.32-0ubuntu5 [495 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf ncurses-base all 6.2+20201114-1 [18.5 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcrypt20 armhf 1.8.7-2ubuntu1 [364 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main armhf liblz4-1 armhf 1.9.3-0ubuntu1 [49.4 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-sysv armhf 246.6-5ubuntu1 [10.3 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap-ng0 armhf 0.7.9-2.2build1 [9672 B] Get:65 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libaudit1 armhf 1:2.8.5-3ubuntu3 [36.1 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libpcre2-8-0 armhf 10.35-2ubuntu1 [169 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libselinux1 armhf 3.1-2build2 [61.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build2 [10.0 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build2 [75.6 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf passwd armhf 1:4.8.1-1ubuntu7 [751 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf adduser all 3.118ubuntu4 [163 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd-timesyncd armhf 246.6-5ubuntu1 [27.8 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapparmor1 armhf 3.0.0-0ubuntu5 [30.4 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libblkid1 armhf 2.36.1-1ubuntu2 [117 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libudev1 armhf 246.6-5ubuntu1 [60.5 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu4 [120 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libuuid1 armhf 2.36.1-1ubuntu2 [20.4 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf libcryptsetup12 armhf 2:2.3.4-1ubuntu1 [174 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libidn2-0 armhf 2.3.0-4 [49.5 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf libip4tc2 armhf 1.8.5-3ubuntu4 [16.7 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main armhf libmount1 armhf 2.36.1-1ubuntu2 [131 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libseccomp2 armhf 2.4.3-1ubuntu6 [32.5 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf mount armhf 2.36.1-1ubuntu2 [113 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main armhf systemd armhf 246.6-5ubuntu1 [3971 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main armhf libsystemd0 armhf 246.6-5ubuntu1 [248 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapt-pkg6.0 armhf 2.1.13 [774 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf apt armhf 2.1.13 [1263 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf init armhf 1.59 [6164 B] Get:90 http://ftpmaster.internal/ubuntu hirsute/main armhf libsmartcols1 armhf 2.36.1-1ubuntu2 [82.3 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf readline-common all 8.1-1 [54.1 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libreadline8 armhf 8.1-1 [115 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libsqlite3-0 armhf 3.34.0-1 [504 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf openssl armhf 1.1.1f-1ubuntu5 [597 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020d-1ubuntu1 [293 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libfakeroot armhf 1.25.3-1.1 [23.2 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf fakeroot armhf 1.25.3-1.1 [60.9 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main armhf libnpth0 armhf 1.6-3 [6980 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 169 MB in 9s (17.8 MB/s) (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu5_armhf.deb ... Unpacking libc6-dev:armhf (2.32-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu5_armhf.deb ... Unpacking libc-dev-bin (2.32-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:armhf (1:4.4.17-1ubuntu1) ... (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-32.34+21.04.1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.8.0-32.34+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) over (1.2.6-1build1) ... 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Setting up libtirpc3:armhf (1.2.6-3) ... Setting up binutils (2.35.50.20201210-0ubuntu2) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:armhf (1.2.6-3) ... Setting up gcc-10 (10.2.1-1ubuntu1) ... Setting up libc6-dev:armhf (2.32-0ubuntu5) ... Setting up libstdc++-10-dev:armhf (10.2.1-1ubuntu1) ... Setting up g++-10 (10.2.1-1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20400303 armhf hirsute-proposed -c chroot:build-PACKAGEBUILD-20400303 --arch=armhf --dist=hirsute-proposed --nolog ataqv_1.2.1+ds-1build1.dsc Initiating build PACKAGEBUILD-20400303 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:57:27 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-017.buildd +==============================================================================+ | ataqv 1.2.1+ds-1build1 (armhf) Sat, 12 Dec 2020 13:10:03 +0000 | +==============================================================================+ Package: ataqv Version: 1.2.1+ds-1build1 Source Version: 1.2.1+ds-1build1 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20400303/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ataqv_1.2.1+ds-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ataqv-GdTWoJ/ataqv-1.2.1+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ataqv-GdTWoJ' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-zsI8A9/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-zsI8A9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zsI8A9/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-zsI8A9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zsI8A9/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-zsI8A9/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (17.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-zsI8A9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (49.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14654 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3 Filtered Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3 dpkg-deb: building package 'sbuild-build-depends-ataqv-dummy' in '/<>/resolver-zsI8A9/apt_archive/sbuild-build-depends-ataqv-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-ataqv-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-zsI8A9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zsI8A9/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-zsI8A9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zsI8A9/apt_archive ./ Sources [615 B] Get:5 copy:/<>/resolver-zsI8A9/apt_archive ./ Packages [697 B] Fetched 2275 B in 0s (46.3 kB/s) Reading package lists... Reading package lists... Install ataqv build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libc-ares2 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu67 libjs-d3-format libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libkrb5-26-heimdal libldap-2.4-2 liblocale-gettext-perl liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libnode72 libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 mailcap man-db media-types mime-support node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-iconv node-jquery node-normalize.css node-rw nodejs po-debconf python3 python3-minimal python3.9 python3.9-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.74-doc libboost-atomic1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libjs-html5shiv npm libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libjs-sizzle nodejs-doc libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libc-ares2 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu67 libjs-d3-format libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libkrb5-26-heimdal libldap-2.4-2 liblocale-gettext-perl liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libnode72 libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 mailcap man-db media-types mime-support node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-iconv node-jquery node-normalize.css node-rw nodejs po-debconf python3 python3-minimal python3.9 python3.9-minimal sbuild-build-depends-ataqv-dummy zlib1g-dev 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 67.1 MB of archives. After this operation, 355 MB of additional disk space will be used. Get:1 copy:/<>/resolver-zsI8A9/apt_archive ./ sbuild-build-depends-ataqv-dummy 0.invalid.0 [988 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main armhf liblocale-gettext-perl armhf 1.07-4build1 [16.0 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libpython3.9-minimal armhf 3.9.1-1 [742 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main armhf libexpat1 armhf 2.2.10-1 [55.1 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf python3.9-minimal armhf 3.9.1-1 [1579 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main armhf python3-minimal armhf 3.9.0-3ubuntu1 [24.0 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main armhf media-types all 1.0.1ubuntu1 [10.9 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main armhf mailcap all 3.67ubuntu1 [24.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf mime-support all 3.66 [3696 B] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libpython3.9-stdlib armhf 3.9.1-1 [1653 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf python3.9 armhf 3.9.1-1 [414 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libpython3-stdlib armhf 3.9.0-3ubuntu1 [7292 B] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf python3 armhf 3.9.0-3ubuntu1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf bsdextrautils armhf 2.36.1-1ubuntu2 [70.7 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libpipeline1 armhf 1.5.3-1 [23.3 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf man-db armhf 2.9.3-2 [1082 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-normalize.css all 8.0.1-3 [10.3 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic-mgc armhf 1:5.39-3 [228 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libmagic1 armhf 1:5.39-3 [71.7 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf file armhf 1:5.39-3 [22.7 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf libelf1 armhf 0.182-1 [39.4 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libglib2.0-0 armhf 2.66.3-2 [1140 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libicu67 armhf 67.1-5 [8312 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libxml2 armhf 2.9.10+dfsg-6.3build1 [531 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main armhf libpsl5 armhf 0.21.0-1.1ubuntu1 [51.1 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main armhf libsigsegv2 armhf 2.12-2build1 [13.0 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main armhf m4 armhf 1.4.18-4 [187 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main armhf autoconf all 2.69-11.1 [321 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main armhf automake all 1:1.16.3-1ubuntu1 [552 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libtool all 2.4.6-14 [161 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-autoreconf all 19 [16.1 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdebhelper-perl all 13.3ubuntu1 [64.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:40 http://ftpmaster.internal/ubuntu hirsute/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main armhf dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:42 http://ftpmaster.internal/ubuntu hirsute/main armhf dwz armhf 0.13+20201015-2 [177 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main armhf po-debconf all 1.0.21 [233 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf debhelper all 13.3ubuntu1 [881 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-2 [514 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/universe armhf help2man armhf 1.47.16 [173 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf icu-devtools armhf 67.1-5 [169 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main armhf libroken18-heimdal armhf 7.7.0+dfsg-2 [34.5 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-2 [140 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost1.74-dev armhf 1.74.0-3ubuntu1 [9507 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-chrono1.74.0 armhf 1.74.0-3ubuntu1 [222 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-chrono1.74-dev armhf 1.74.0-3ubuntu1 [225 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf libboost-chrono-dev armhf 1.74.0.2ubuntu2 [3620 B] Get:57 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-filesystem1.74.0 armhf 1.74.0-3ubuntu1 [249 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-system1.74.0 armhf 1.74.0-3ubuntu1 [215 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-system1.74-dev armhf 1.74.0-3ubuntu1 [213 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-filesystem1.74-dev armhf 1.74.0-3ubuntu1 [259 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libboost-filesystem-dev armhf 1.74.0.2ubuntu2 [3028 B] Get:62 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-regex1.74.0 armhf 1.74.0-3ubuntu1 [433 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libicu-dev armhf 67.1-5 [9331 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-regex1.74-dev armhf 1.74.0-3ubuntu1 [543 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-iostreams1.74.0 armhf 1.74.0-3ubuntu1 [233 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main armhf libboost-iostreams1.74-dev armhf 1.74.0-3ubuntu1 [242 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf libboost-iostreams-dev armhf 1.74.0.2ubuntu2 [2980 B] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libboost-system-dev armhf 1.74.0.2ubuntu2 [3144 B] Get:69 http://ftpmaster.internal/ubuntu hirsute/main armhf libbrotli1 armhf 1.0.9-2build2 [259 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-2 [24.3 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-2 [78.5 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main armhf libwind0-heimdal armhf 7.7.0+dfsg-2 [47.2 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-2 [88.8 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-2 [170 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-2 [13.2 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-2 [79.9 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2ubuntu1 [13.2 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libsasl2-2 armhf 2.1.27+dfsg-2ubuntu1 [42.4 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main armhf libldap-2.4-2 armhf 2.4.53+dfsg-1ubuntu5 [135 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libnghttp2-14 armhf 1.42.0-1 [60.7 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build2 [48.9 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main armhf libssh-4 armhf 0.9.5-1 [147 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl3-gnutls armhf 7.72.0-1ubuntu1 [204 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main armhf libcurl4-gnutls-dev armhf 7.72.0-1ubuntu1 [295 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/universe armhf libdeflate0 armhf 1.6-1 [46.1 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/universe armhf libdeflate-dev armhf 1.6-1 [38.4 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhts3 armhf 1.11-2 [301 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main armhf liblzma-dev armhf 5.2.4-1ubuntu1 [139 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu4 [149 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/universe armhf libhts-dev armhf 1.11-2 [3794 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-3 [396 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-3 [2364 B] Get:93 http://ftpmaster.internal/ubuntu hirsute/universe armhf libjs-jquery-datatables all 1.10.21+dfsg-1 [137 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/universe armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-4 [648 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses-dev armhf 6.2+20201114-1 [308 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main armhf libncurses5-dev armhf 6.2+20201114-1 [992 B] Get:97 http://ftpmaster.internal/ubuntu hirsute/main armhf libc-ares2 armhf 1.17.1-1 [35.9 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/universe armhf libnode72 armhf 12.19.0~dfsg-1ubuntu1 [7581 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/universe armhf nodejs armhf 12.19.0~dfsg-1ubuntu1 [33.2 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-array all 1.2.4-2 [23.5 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-axis all 1.0.12-2 [16.5 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-dispatch all 1.0.6-1 [7648 B] Get:103 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-selection all 1.4.0-5 [31.2 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-drag all 1.2.5-1 [13.8 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-color all 1.2.8-1 [14.9 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-interpolate all 1.4.0-1 [18.5 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-ease all 1.0.5-2 [320 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-timer all 1.0.9-2 [8428 B] Get:109 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-transition all 1.2.0-4 [22.0 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-brush all 1.1.5-1 [177 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-path all 1.0.9-1 [8004 B] Get:112 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-chord all 1.0.6-2 [124 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-collection all 1.0.7-2 [11.6 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-contour all 1.3.2-3 [5612 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-iconv armhf 2.3.5-5 [117 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-queue all 3.0.7-10 [9336 B] Get:117 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-rw all 1.3.3-2 [7136 B] Get:118 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-commander all 4.1.1-3 [28.1 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-dsv all 1.1.1-2 [14.1 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-fetch all 1.1.2+dfsg-2 [15.8 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-quadtree all 1.0.7-1 [12.9 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-force all 1.2.1-2 [363 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/universe armhf libjs-d3-format all 1:1.4.1-2 [16.8 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-format all 1:1.4.1-2 [7584 B] Get:125 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-geo all 1.11.9-1 [54.7 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-hierarchy all 1.1.8-2 [286 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-polygon all 1.0.5-2 [14.2 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-random all 1.1.2-2 [6992 B] Get:129 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-time all 1.0.11-3 [14.5 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-time-format all 2.1.3-2 [18.9 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-scale all 2.2.2-2 [49.1 kB] Get:132 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-scale-chromatic all 1.5.0-1 [18.4 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-shape all 1.3.7-1 [40.8 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-voronoi all 1.1.4-2 [17.4 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3-zoom all 1.8.3-1 [227 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute/universe armhf node-d3 all 5.16.0-1 [179 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.1 MB in 5s (12.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libjs-jquery-datatables (1.10.21+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-iostreams1.74-dev:armhf (1.74.0-3ubuntu1) ... Setting up node-d3-drag (1.2.5-1) ... Setting up node-rw (1.3.3-2) ... Setting up node-d3-scale (2.2.2-2) ... Setting up node-d3-force (1.2.1-2) ... Setting up node-d3-contour (1.3.2-3) ... Setting up node-d3-dsv (1.1.1-2) ... Setting up node-d3-transition (1.2.0-4) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up node-d3-zoom (1.8.3-1) ... Setting up po-debconf (1.0.21) ... Setting up node-d3-fetch (1.1.2+dfsg-2) ... Setting up libboost-iostreams-dev:armhf (1.74.0.2ubuntu2) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... 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Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.50.20201210-0ubuntu2 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-1ubuntu1 gcc-10_10.2.1-1ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.1-1ubuntu1 libstdc++6_10.2.1-1ubuntu1 linux-libc-dev_5.8.0-32.34+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.13 autoconf_2.69-11.1 automake_1:1.16.3-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201210-0ubuntu2 binutils-arm-linux-gnueabihf_2.35.50.20201210-0ubuntu2 binutils-common_2.35.50.20201210-0ubuntu2 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 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ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 node-commander_4.1.1-3 node-d3_5.16.0-1 node-d3-array_1.2.4-2 node-d3-axis_1.0.12-2 node-d3-brush_1.1.5-1 node-d3-chord_1.0.6-2 node-d3-collection_1.0.7-2 node-d3-color_1.2.8-1 node-d3-contour_1.3.2-3 node-d3-dispatch_1.0.6-1 node-d3-drag_1.2.5-1 node-d3-dsv_1.1.1-2 node-d3-ease_1.0.5-2 node-d3-fetch_1.1.2+dfsg-2 node-d3-force_1.2.1-2 node-d3-format_1:1.4.1-2 node-d3-geo_1.11.9-1 node-d3-hierarchy_1.1.8-2 node-d3-interpolate_1.4.0-1 node-d3-path_1.0.9-1 node-d3-polygon_1.0.5-2 node-d3-quadtree_1.0.7-1 node-d3-queue_3.0.7-10 node-d3-random_1.1.2-2 node-d3-scale_2.2.2-2 node-d3-scale-chromatic_1.5.0-1 node-d3-selection_1.4.0-5 node-d3-shape_1.3.7-1 node-d3-time_1.0.11-3 node-d3-time-format_2.1.3-2 node-d3-timer_1.0.9-2 node-d3-transition_1.2.0-4 node-d3-voronoi_1.1.4-2 node-d3-zoom_1.8.3-1 node-iconv_2.3.5-5 node-jquery_3.5.1+dfsg+~3.5.4-3 node-normalize.css_8.0.1-3 node-rw_1.3.3-2 nodejs_12.19.0~dfsg-1ubuntu1 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.9.0-3ubuntu1 python3-minimal_3.9.0-3ubuntu1 python3.9_3.9.1-1 python3.9-minimal_3.9.1-1 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-ataqv-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-5ubuntu1 systemd-sysv_246.6-5ubuntu1 systemd-timesyncd_246.6-5ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 12 12:17:40 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ataqv_1.2.1+ds-1build1.dsc dpkg-source: info: extracting ataqv in /<>/ataqv-1.2.1+ds dpkg-source: info: unpacking ataqv_1.2.1+ds.orig.tar.xz dpkg-source: info: unpacking ataqv_1.2.1+ds-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying modernize dpkg-source: info: applying no_cov dpkg-source: info: applying python3 dpkg-source: info: applying packaged_js dpkg-source: info: applying spelling dpkg-source: info: applying clean_less dpkg-source: info: applying reproducible_build Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20400303 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20400303 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20400303 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ataqv dpkg-buildpackage: info: source version 1.2.1+ds-1build1 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/ataqv-1.2.1+ds' make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/ataqv-1.2.1+ds' cp -sf /usr/share/nodejs/d3/dist/d3.min.js src/web/js/d3.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/JSZip/jszip.min.js src/web/js/jszip.min.js cp -sf /usr/share/javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css src/web/css/datatables.buttons.min.css cp -sf /usr/share/javascript/jquery-datatables/css/jquery.dataTables.min.css src/web/css/datatables.min.css cp -sf /usr/share/fonts-font-awesome/css/font-awesome.min.css src/web/css/font-awesome.min.css cp -sf /usr/share/javascript/normalize.css/normalize.css src/web/css/normalize.css cp -sf /usr/share/fonts-font-awesome/fonts/* src/web/fonts/ cp -s /usr/share/javascript/jquery/jquery.min.js \ /usr/share/javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js \ /usr/share/javascript/jquery-datatables/jquery.dataTables.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js \ /usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js \ /usr/share/javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js \ src/web/js/ rm -f src/web/js/datatables.min.js make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/ataqv-1.2.1+ds' dh_auto_build -- all testing/run_ataqv_tests make -j4 "INSTALL=install --strip-program=true" all testing/run_ataqv_tests make[2]: Entering directory '/<>/ataqv-1.2.1+ds' g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/ataqv.o -c /<>/ataqv-1.2.1+ds/src/cpp/ataqv.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/Features.o -c /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/HTS.o -c /<>/ataqv-1.2.1+ds/src/cpp/HTS.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/IO.o -c /<>/ataqv-1.2.1+ds/src/cpp/IO.cpp In file included from /usr/include/c++/10/map:60, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator > >}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector > FeatureTree::get_references_by_feature_count()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/Metrics.o -c /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/Peaks.o -c /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/map:60, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferencePeakCollection>; _KeyOfValue = std::_Select1st, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/Utils.o -c /<>/ataqv-1.2.1+ds/src/cpp/Utils.cpp In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/run_ataqv_tests.o -c /<>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks_by_size_descending()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_features.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_hts.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp In file included from /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1: /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____167()’: /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:171:47: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 171 | REQUIRE_THROWS_AS(collection.add(f), std::out_of_range); | ^~~~~~~~~~~~ In file included from /<>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp:3: /<>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’: /<>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp:200:57: warning: catching polymorphic type ‘class HTSException’ by value [-Wcatch-value=] 200 | REQUIRE_THROWS_AS(record_to_string(header, record), HTSException); | ^~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:76, from /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Feature; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:76, from /<>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_io.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_io.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1937 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void ____C_A_T_C_H____T_E_S_T____61()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_metrics.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp In file included from /usr/include/c++/10/map:60, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:16: /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_peaks.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void nlohmann::basic_json::push_back(const nlohmann::basic_json&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp:1: /<>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____172()’: /<>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp:181:44: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 181 | REQUIRE_THROWS_AS(rpc.add(peak3), std::out_of_range); | ^~~~~~~~~~~~ In file included from /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3: /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’: /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:172:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 172 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:177:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 177 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____242()’: /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:248:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 248 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____251()’: /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:258:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=] 258 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException); | ^~~~~~~~~~~~~ In file included from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.hpp:16, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:21: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2082 | basic_json(std::initializer_list init, | ^~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’: /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1341 | }; | ^ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569, from /<>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp:2: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569, from /<>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp:2: /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h: In destructor ‘Catch::Section::~Section()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:881:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 881 | } | ^ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569, from /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569, from /<>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3: /usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](nlohmann::basic_json::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1338 | _M_fill_insert(begin() + __offset, __n, __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/test_utils.o -c /<>/ataqv-1.2.1+ds/src/cpp/test_utils.cpp In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1531 | }; | ^ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/Features.o -c /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/HTS.o -c /<>/ataqv-1.2.1+ds/src/cpp/HTS.cpp In file included from /usr/include/c++/10/map:60, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferenceFeatureCollection> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator > >}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector > FeatureTree::get_references_by_feature_count()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferenceFeatureCollection>, std::_Select1st, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/IO.o -c /<>/ataqv-1.2.1+ds/src/cpp/IO.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/Metrics.o -c /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/Peaks.o -c /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/Utils.o -c /<>/ataqv-1.2.1+ds/src/cpp/Utils.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/map:60, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, ReferencePeakCollection>; _KeyOfValue = std::_Select1st, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator, ReferencePeakCollection> >]’: /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o build/ataqv build/ataqv.o build/Features.o build/HTS.o build/IO.o build/Metrics.o build/Peaks.o build/Utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/map:61, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11: /usr/include/c++/10/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’: /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ReferencePeakCollection>, std::_Select1st, ReferencePeakCollection> >, numeric_string_comparator, std::allocator, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks_by_size_descending()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector PeakTree::list_peaks_by_overlapping_hqaa_descending()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /<>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/map:60, from /usr/include/boost/system/detail/std_interoperability.hpp:11, from /usr/include/boost/system/error_code.hpp:963, from /usr/include/boost/chrono/detail/system.hpp:11, from /usr/include/boost/chrono/system_clocks.hpp:64, from /usr/include/boost/chrono/chrono.hpp:13, from /usr/include/boost/chrono/include.hpp:15, from /usr/include/boost/chrono.hpp:17, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:16: /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void nlohmann::basic_json::push_back(const nlohmann::basic_json&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.hpp:16, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:21: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 2082 | basic_json(std::initializer_list init, | ^~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /<>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’: /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1341 | }; | ^ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:881:1: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 881 | } | ^ In file included from /usr/include/c++/10/vector:67, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 1531 | }; | ^ /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /<>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6, from /<>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19, from /<>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12, from /<>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18: /usr/include/c++/10/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<>/ataqv-1.2.1+ds/src/cpp -D ARM -D LINUX -o testing/run_ataqv_tests testing/run_ataqv_tests.o testing/test_features.o testing/test_hts.o testing/test_io.o testing/test_metrics.o testing/test_peaks.o testing/test_utils.o testing/Features.o testing/HTS.o testing/IO.o testing/Metrics.o testing/Peaks.o testing/Utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread make[2]: Leaving directory '/<>/ataqv-1.2.1+ds' make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' dh_auto_test -a make -j4 test make[1]: Entering directory '/<>/ataqv-1.2.1+ds' [E::sam_format1_append] Corrupted aux data for read SRR891268.122333488 Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Reading human autosomal references from autosomal_references.gz. Autosomal references for human: I II III Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'hg19.tss.refseq.bed.gz'. Excluding TSS [chr11 10530722 10530723 MTRNR2L8 0 -] which overlaps excluded region [chr11 10529403 10531969 Low_mappability_island 1000 .] Excluding TSS [chr12 118573688 118573689 PEBP1 0 +] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding TSS [chr14 105196180 105196181 ADSSL1 0 +] which overlaps excluded region [chr14 105195912 105196275 TAR1 1000 .] Excluding TSS [chr17 22022436 22022437 MTRNR2L1 0 +] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding TSS [chr20 55934877 55934878 MTRNR2L3 0 -] which overlaps excluded region [chr20 55932703 55936114 chrM 1000 .] Excluding TSS [chr5 79946853 79946854 MTRNR2L2 0 -] which overlaps excluded region [chr5 79945807 79948223 Low_mappability_island 1000 .] Excluding TSS [chr6 62284007 62284008 MTRNR2L9 0 +] which overlaps excluded region [chr6 62283966 62284581 Low_mappability_island 1000 .] Excluding TSS [chr7 57207570 57207571 ZNF479 0 -] which overlaps excluded region [chr7 57205319 57210318 BSR/Beta 1000 .] Excluding TSS [chr7 63688851 63688852 ZNF679 0 +] which overlaps excluded region [chr7 63686197 63693336 BSR/Beta 1000 .] Excluding TSS [chr7 142374130 142374131 MTRNR2L6 0 +] which overlaps excluded region [chr7 142372972 142375638 Low_mappability_island 1000 .] Excluding TSS [chrX 55208943 55208944 MTRNR2L10 0 -] which overlaps excluded region [chrX 55204685 55210460 chrM 1000 .] Excluding TSS [chrY 25130409 25130410 BPY2B 0 +] which overlaps excluded region [chrY 25122419 25160800 BSR/Beta 1000 .] Excluding TSS [chrY 26764150 26764151 BPY2B 0 +] which overlaps excluded region [chrY 26756160 26794538 BSR/Beta 1000 .] Excluding TSS [chrY 27198250 27198251 BPY2B 0 -] which overlaps excluded region [chrY 27167859 27206241 BSR/Beta 1000 .] chr1 feature count: 2687 chr2 feature count: 1715 chr3 feature count: 1490 chr4 feature count: 1004 chr5 feature count: 1132 chr6 feature count: 1368 chr7 feature count: 1169 chr8 feature count: 913 chr9 feature count: 1025 chr10 feature count: 1039 chr11 feature count: 1642 chr12 feature count: 1350 chr13 feature count: 433 chr14 feature count: 785 chr15 feature count: 812 chr16 feature count: 1106 chr17 feature count: 1528 chr18 feature count: 398 chr19 feature count: 1785 chr20 feature count: 694 chr21 feature count: 321 chr22 feature count: 593 Loaded 24989 TSS in 4.76911 seconds. (5239.76 TSS/second). Collecting metrics from test.bam. Logging problematic reads to SRR891275.problems. Loading peaks for read group SRR891275 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 44.4111 seconds. (839.339 peaks/second). Logging problematic reads to SRR891278.problems. Loading peaks for read group SRR891278 from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 44.5789 seconds. (836.18 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 53 from [SRR891275.421 1187 chr1 569924 15 50M = 569927 53 TGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC CCCFFFFFGHHHHIGIJIJIEHIGIIIJJGIJJJJGGGJJJJJGIIJJFI XA:Z:chrM,+9376,50M,1; MD:Z:50 NM:i:0 AS:i:50 XS:i:47 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 67 from [SRR891275.1617 99 chr1 2059335 60 50M = 2059352 67 CACCTTAGCTCTGGACACGAATTTGCGGTCATTGCTGTTCTTGTGTCTCT ???DB?D8C:CD42C<<*?DB<9?BBBD?9DD4 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 112 from [SRR891275.176 99 chr1 2419720 60 50M = 2419782 112 ATCCCTGGGACTGTAGGTGGGAAGGGCATTGCAAGGCACAGGGGCGGGGA @BCFFDEDDHHHHHIJICGHI=GHIGIJJJJJIJIJIGHFHIJBHHDB87 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 216 from [SRR891275.1770 163 chr1 18154381 60 50M = 18154547 216 CAACTGTTTTGCTTACTCTGACTAATACAGAGAAGGGAGCCACAATATAC C@CFFFDFGHHHHJJJJJJJJJJJJJIEIIHIJJJIGIJIJJJCHHIJJJ MD:Z:50 NM:i:0 AS:i:50 XS:i:21 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 439 (84.423%) 10: 439 (84.423%) 15: 438 (84.231%) 20: 436 (83.846%) 25: 435 (83.654%) 30: 420 (80.769%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 23 (11.500% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 23 (11.500% of all high quality autosomal alignments) Top 1000 peaks: 23 (11.500% of all high quality autosomal alignments) Top 10,000 peaks: 23 (11.500% of all high quality autosomal alignments) Read Group ========== ID: SRR891278 Library: SRR891278 Sample: GSM1155967 Description: a library of brutal tests? Sequencing center: Sequencing date: Sequencing platform: ILLUMINA Platform model: Platform unit: Flow order: Key sequence: Predicted median insert size: Programs: Metrics ------- Read Mapping Metrics -------------------- Total reads: 520 Total problems: 90 (17.308%) Properly paired and mapped reads: 430 (82.692%) Secondary reads: 10 (1.923%) Supplementary reads: 0 (0.000%) Duplicate reads: 158 (30.385% of all reads) Quality Indicators ------------------ Short to mononucleosomal ratio: 2.357 High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200 as a percentage of autosomal reads: 91.743% as a percentage of all reads: 38.462% TSS enrichment: 3.687 Paired Read Metrics ------------------- Paired reads: 520 (100.000%) Paired and mapped reads: 440 (84.615%) FR reads: 430 (82.692308%) First of pair: 259 (49.808%) Second of pair: 261 (50.192%) Forward reads: 261 (50.192%) Reverse reads: 259 (49.808%) Forward mate reads: 260 (50.000%) Reverse mate reads: 260 (50.000%) Unmapped Read Metrics --------------------- Unmapped reads: 8 (1.538%) Unmapped mate reads: 4 (0.769%) Reads not passing quality controls: 0 (0.000%) Unpaired reads: 0 (0.000%) Reads with zero mapping quality: 49 (9.423%) Aberrant Mapping Metrics ------------------------ RF reads: 6 (1.153846%) FF reads: 4 (0.769231%) RR reads: 9 (1.730769%) Reads that paired and mapped but... on different chromosomes: 8 (1.538%) probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 649) just not properly: 0 (0.000%) Autosomal/Mitochondrial Metrics ------------------------------- Total autosomal reads: 218 (41.923% of all reads) Total mitochondrial reads: 192 (36.923% of all reads) Duplicate autosomal reads: 17 (7.798% of all autosomal reads) Duplicate mitochondrial reads: 92 (47.917% of all mitochondrial reads) Mapping Quality --------------- Mean MAPQ: 48.044 Median MAPQ: 60.000 Reads with MAPQ >=... 5: 449 (86.346%) 10: 445 (85.577%) 15: 443 (85.192%) 20: 442 (85.000%) 25: 442 (85.000%) 30: 417 (80.192%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 92 (46.000% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (1.000% of all high quality autosomal alignments) Top 10 peaks: 20 (10.000% of all high quality autosomal alignments) Top 100 peaks: 92 (46.000% of all high quality autosomal alignments) Top 1000 peaks: 92 (46.000% of all high quality autosomal alignments) Top 10,000 peaks: 92 (46.000% of all high quality autosomal alignments) [E::hts_open_format] Failed to open file "missing_alignment_file.bam" : No such file or directory Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from test.peaks.gz. Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000.000 .] Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000.000 .] Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000.000 .] Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .] Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000.000 .] Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000.000 .] Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .] Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000.000 .] Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .] Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .] Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000.000 .] Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000.000 .] Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000.000 .] Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .] Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000.000 .] Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000.000 .] Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000.000 .] Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .] Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .] Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000.000 .] Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000.000 .] Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000.000 .] Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .] Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .] Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000.000 .] Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .] Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000.000 .] Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000.000 .] Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000.000 .] Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000.000 .] Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000.000 .] Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000.000 .] Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .] Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000.000 .] Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000.000 .] Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .] Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .] Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000.000 .] Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000.000 .] Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .] Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000.000 .] Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000.000 .] Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .] Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000.000 .] Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000.000 .] Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000.000 .] Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000.000 .] Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000.000 .] Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .] Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000.000 .] Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000.000 .] Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .] Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000.000 .] Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000.000 .] Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000.000 .] Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000.000 .] Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .] Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000.000 .] Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000.000 .] Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000.000 .] Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000.000 .] Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000.000 .] Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .] Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .] Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000.000 .] Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000.000 .] Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000.000 .] Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000.000 .] Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .] Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .] Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000.000 .] Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000.000 .] Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000.000 .] Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000.000 .] Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000.000 .] Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .] Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .] Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000.000 .] Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000.000 .] Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .] Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .] Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000.000 .] Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000.000 .] Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .] Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000.000 .] Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .] Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000.000 .] Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000.000 .] Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000.000 .] Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000.000 .] chr1 peak count: 3667 chr2 peak count: 3154 chr3 peak count: 2528 chr4 peak count: 1814 chr5 peak count: 2042 chr6 peak count: 2483 chr7 peak count: 1999 chr8 peak count: 1647 chr9 peak count: 1475 chr10 peak count: 1815 chr11 peak count: 1878 chr12 peak count: 2078 chr13 peak count: 1026 chr14 peak count: 1275 chr15 peak count: 1140 chr16 peak count: 1211 chr17 peak count: 1664 chr18 peak count: 772 chr19 peak count: 1595 chr20 peak count: 864 chr21 peak count: 487 chr22 peak count: 662 Loaded 37276 peaks in 44.694 seconds. (834.034 peaks/second). New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F] New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates] New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH=... 5: 888 (85.385%) 10: 884 (85.000%) 15: 881 (84.712%) 20: 878 (84.423%) 25: 877 (84.327%) 30: 837 (80.481%) Peak Metrics ------------ Peak count: 37276 High quality autosomal alignments that overlapped peaks: 115 (28.750% of all high quality autosomal alignments) Number of high quality autosomal alignments overlapping the top 10,000 peaks: Top peak: 2 (0.500% of all high quality autosomal alignments) Top 10 peaks: 20 (5.000% of all high quality autosomal alignments) Top 100 peaks: 115 (28.750% of all high quality autosomal alignments) Top 1000 peaks: 115 (28.750% of all high quality autosomal alignments) Top 10,000 peaks: 115 (28.750% of all high quality autosomal alignments) Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Collecting metrics from test.bam. Logging problematic reads to Test collector.problems. Loading peaks for read group Test collector from notthere.peaks.gz. Read 411 excluded regions from exclude.dac.bed.gz. Read 1649 excluded regions from exclude.duke.bed.gz. Loading TSS file 'notthere.bed.gz'. =============================================================================== All tests passed (241 assertions in 54 test cases) make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/ataqv-1.2.1+ds' dh_auto_install -- prefix=/usr make -j4 install DESTDIR=/<>/ataqv-1.2.1\+ds/debian/ataqv AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr make[2]: Entering directory '/<>/ataqv-1.2.1+ds' Installing to /usr install -d -m 0755 /<>/ataqv-1.2.1+ds/debian/ataqv/usr/bin install -d -m 0755 /<>/ataqv-1.2.1+ds/debian/ataqv/usr/bin install -m 0755 build/ataqv /<>/ataqv-1.2.1+ds/debian/ataqv/usr/bin for f in src/scripts/make_ataqv_pipeline src/scripts/mkarv src/scripts/run_ataqv_example src/scripts/srvarv; do sed -e 's/{{VERSION}}/1.2.1/g' $f > build/$(basename $f); install -m 0755 build/$(basename $f) /<>/ataqv-1.2.1+ds/debian/ataqv/usr/bin; done install -d -m 0755 /<>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web cp -a src/web/* /<>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web find /<>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web -type d -exec chmod 755 {} \; find /<>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web -type f -exec chmod 644 {} \; make[2]: Leaving directory '/<>/ataqv-1.2.1+ds' make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>/ataqv-1.2.1+ds' help2man --no-info --name="QC metrics for ATAC-seq data" build/ataqv > debian/ataqv.1 help2man --no-info --name="Turns ataqv results into a web app" src/scripts/mkarv > debian/mkarv.1 help2man --no-info --name="serve an instance of the ataqv web results viewer" --version-string 1.2.1+ds src/scripts/srvarv > debian/srvarv.1 dh_installman make[1]: Leaving directory '/<>/ataqv-1.2.1+ds' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: debian/ataqv/usr/lib/ataqv/run_ataqv_tests contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ataqv/usr/bin/ataqv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing ataqv-dbgsym (in debian/.debhelper/ataqv/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing ataqv (in debian/ataqv); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/ataqv/dbgsym-root/DEBIAN/control, package ataqv-dbgsym, directory debian/.debhelper/ataqv/dbgsym-root dpkg-deb: building package 'ataqv-dbgsym' in 'debian/.debhelper/scratch-space/build-ataqv/ataqv-dbgsym_1.2.1+ds-1build1_armhf.deb'. pkgstripfiles: processing control file: debian/ataqv/DEBIAN/control, package ataqv, directory debian/ataqv pkgstripfiles: Running PNG optimization (using 4 cpus) for package ataqv ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ataqv' in '../ataqv_1.2.1+ds-1build1_armhf.deb'. Renaming ataqv-dbgsym_1.2.1+ds-1build1_armhf.deb to ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ataqv_1.2.1+ds-1build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-12T13:18:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ataqv_1.2.1+ds-1build1_armhf.changes: ------------------------------------- Format: 1.8 Date: Sat, 12 Dec 2020 13:03:13 +0100 Source: ataqv Binary: ataqv Architecture: armhf Version: 1.2.1+ds-1build1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: ataqv - ATAC-seq QC and visualization Changes: ataqv (1.2.1+ds-1build1) hirsute; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: 66ae0c64c1d91bd636a17c66fe8dbceb6c8d0854 7805888 ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb de289acf1a73368318776a1fbbf0a3159e9e715c 9470 ataqv_1.2.1+ds-1build1_armhf.buildinfo d8e1e48e8c452677a4db29a7ecd113b1e9522696 3331748 ataqv_1.2.1+ds-1build1_armhf.deb Checksums-Sha256: c6a9cc802c47cff4b23fe91a935251257ee21bb4097bf93fc192da42a33265a1 7805888 ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb efe7b726dae5444d98a739e4a6c332ced5d22bbee410e69be1165987d13c6f1b 9470 ataqv_1.2.1+ds-1build1_armhf.buildinfo 4f80ca4a84bd39263d4fc53fbc7bd2e1a9a103ebeceaa3c1965866f5ba3a6a84 3331748 ataqv_1.2.1+ds-1build1_armhf.deb Files: 2ccb2652e188c2246d69ebe0e2da9779 7805888 debug optional ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb 281d4f364f921c6daf87707b408566a8 9470 science optional ataqv_1.2.1+ds-1build1_armhf.buildinfo 595db460008b9a80e22a05088d27bc7e 3331748 science optional ataqv_1.2.1+ds-1build1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: ataqv Binary: ataqv ataqv-dbgsym Architecture: armhf Version: 1.2.1+ds-1build1 Checksums-Md5: 2ccb2652e188c2246d69ebe0e2da9779 7805888 ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb 595db460008b9a80e22a05088d27bc7e 3331748 ataqv_1.2.1+ds-1build1_armhf.deb Checksums-Sha1: 66ae0c64c1d91bd636a17c66fe8dbceb6c8d0854 7805888 ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb d8e1e48e8c452677a4db29a7ecd113b1e9522696 3331748 ataqv_1.2.1+ds-1build1_armhf.deb Checksums-Sha256: c6a9cc802c47cff4b23fe91a935251257ee21bb4097bf93fc192da42a33265a1 7805888 ataqv-dbgsym_1.2.1+ds-1build1_armhf.ddeb 4f80ca4a84bd39263d4fc53fbc7bd2e1a9a103ebeceaa3c1965866f5ba3a6a84 3331748 ataqv_1.2.1+ds-1build1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Sat, 12 Dec 2020 13:18:33 +0000 Build-Path: /<>/ataqv-1.2.1+ds Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201210-0ubuntu2), binutils-arm-linux-gnueabihf (= 2.35.50.20201210-0ubuntu2), binutils-common (= 2.35.50.20201210-0ubuntu2), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-1ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.3ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-1ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-1ubuntu1), gcc-10-base (= 10.2.1-1ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), help2man (= 1.47.16), hostname (= 3.23), icu-devtools (= 67.1-5), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-1ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.1-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libbinutils (= 2.35.50.20201210-0ubuntu2), libblkid1 (= 2.36.1-1ubuntu2), libboost-chrono-dev (= 1.74.0.2ubuntu2), libboost-chrono1.74-dev (= 1.74.0-3ubuntu1), libboost-chrono1.74.0 (= 1.74.0-3ubuntu1), libboost-filesystem-dev (= 1.74.0.2ubuntu2), libboost-filesystem1.74-dev (= 1.74.0-3ubuntu1), libboost-filesystem1.74.0 (= 1.74.0-3ubuntu1), libboost-iostreams-dev (= 1.74.0.2ubuntu2), libboost-iostreams1.74-dev (= 1.74.0-3ubuntu1), libboost-iostreams1.74.0 (= 1.74.0-3ubuntu1), libboost-regex1.74-dev (= 1.74.0-3ubuntu1), libboost-regex1.74.0 (= 1.74.0-3ubuntu1), libboost-system-dev (= 1.74.0.2ubuntu2), libboost-system1.74-dev (= 1.74.0-3ubuntu1), libboost-system1.74.0 (= 1.74.0-3ubuntu1), libboost1.74-dev (= 1.74.0-3ubuntu1), libbrotli1 (= 1.0.9-2build2), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-ares2 (= 1.17.1-1), libc-bin (= 2.32-0ubuntu5), libc-dev-bin (= 2.32-0ubuntu5), libc6 (= 2.32-0ubuntu5), libc6-dev (= 2.32-0ubuntu5), libcap-ng0 (= 0.7.9-2.2build1), libcc1-0 (= 10.2.1-1ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.50.20201210-0ubuntu2), libctf0 (= 2.35.50.20201210-0ubuntu2), libcurl3-gnutls (= 7.72.0-1ubuntu1), libcurl4-gnutls-dev (= 7.72.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.3ubuntu1), libdeflate-dev (= 1.6-1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5ubuntu3), libelf1 (= 0.182-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.1-1ubuntu1), libgcc-s1 (= 10.2.1-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.1-1ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhts-dev (= 1.11-2), libhts3 (= 1.11-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu-dev (= 67.1-5), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libjs-d3-format (= 1:1.4.1-2), libjs-jquery (= 3.5.1+dfsg+~3.5.4-3), libjs-jquery-datatables (= 1.10.21+dfsg-1), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-4), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu5), liblocale-gettext-perl (= 1.07-4build1), liblz4-1 (= 1.9.3-0ubuntu1), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses-dev (= 6.2+20201114-1), libncurses5-dev (= 6.2+20201114-1), libncurses6 (= 6.2+20201114-1), libncursesw6 (= 6.2+20201114-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnode72 (= 12.19.0~dfsg-1ubuntu1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1ubuntu1), libpython3-stdlib (= 3.9.0-3ubuntu1), libpython3.9-minimal (= 3.9.1-1), libpython3.9-stdlib (= 3.9.1-1), libreadline8 (= 8.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36.1-1ubuntu2), libsqlite3-0 (= 3.34.0-1), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1f-1ubuntu5), libstdc++-10-dev (= 10.2.1-1ubuntu1), libstdc++6 (= 10.2.1-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-5ubuntu1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.1-1ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-5ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.3build1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-32.34+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), mailcap (= 3.67ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), media-types (= 1.0.1ubuntu1), mime-support (= 3.66), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), node-commander (= 4.1.1-3), node-d3 (= 5.16.0-1), node-d3-array (= 1.2.4-2), node-d3-axis (= 1.0.12-2), node-d3-brush (= 1.1.5-1), node-d3-chord (= 1.0.6-2), node-d3-collection (= 1.0.7-2), node-d3-color (= 1.2.8-1), node-d3-contour (= 1.3.2-3), node-d3-dispatch (= 1.0.6-1), node-d3-drag (= 1.2.5-1), node-d3-dsv (= 1.1.1-2), node-d3-ease (= 1.0.5-2), node-d3-fetch (= 1.1.2+dfsg-2), node-d3-force (= 1.2.1-2), node-d3-format (= 1:1.4.1-2), node-d3-geo (= 1.11.9-1), node-d3-hierarchy (= 1.1.8-2), node-d3-interpolate (= 1.4.0-1), node-d3-path (= 1.0.9-1), node-d3-polygon (= 1.0.5-2), node-d3-quadtree (= 1.0.7-1), node-d3-queue (= 3.0.7-10), node-d3-random (= 1.1.2-2), node-d3-scale (= 2.2.2-2), node-d3-scale-chromatic (= 1.5.0-1), node-d3-selection (= 1.4.0-5), node-d3-shape (= 1.3.7-1), node-d3-time (= 1.0.11-3), node-d3-time-format (= 2.1.3-2), node-d3-timer (= 1.0.9-2), node-d3-transition (= 1.2.0-4), node-d3-voronoi (= 1.1.4-2), node-d3-zoom (= 1.8.3-1), node-iconv (= 2.3.5-5), node-jquery (= 3.5.1+dfsg+~3.5.4-3), node-normalize.css (= 8.0.1-3), node-rw (= 1.3.3-2), nodejs (= 12.19.0~dfsg-1ubuntu1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), python3 (= 3.9.0-3ubuntu1), python3-minimal (= 3.9.0-3ubuntu1), python3.9 (= 3.9.1-1), python3.9-minimal (= 3.9.1-1), readline-common (= 8.1-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), tzdata (= 2020d-1ubuntu1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607774593" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ataqv_1.2.1+ds-1build1_armhf.deb -------------------------------- new Debian package, version 2.0. size 3331748 bytes: control archive=1812 bytes. 1048 bytes, 17 lines control 2422 bytes, 32 lines md5sums Package: ataqv Version: 1.2.1+ds-1build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5849 Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libncurses6 (>= 6), libstdc++6 (>= 9), libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, python3, node-d3 Suggests: picard-tools, samtools, macs, wget Section: science Priority: optional Homepage: https://github.com/ParkerLab/ataqv/ Description: ATAC-seq QC and visualization A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. 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root/root 2009 2020-12-12 12:03 ./usr/share/man/man1/ataqv.1.gz -rw-r--r-- root/root 1630 2020-12-12 12:03 ./usr/share/man/man1/mkarv.1.gz -rw-r--r-- root/root 382 2020-12-12 12:03 ./usr/share/man/man1/srvarv.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 414 Distribution: hirsute-proposed Host Architecture: armhf Install-Time: 94 Job: ataqv_1.2.1+ds-1build1.dsc Machine Architecture: arm64 Package: ataqv Package-Time: 512 Source-Version: 1.2.1+ds-1build1 Space: n/a Status: successful Version: 1.2.1+ds-1build1 -------------------------------------------------------------------------------- Finished at 2020-12-12T13:18:35Z Build needed 00:08:32, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20400303 Scanning for processes to kill in build PACKAGEBUILD-20400303