https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble/+build/28265192
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lcy02-amd64-064 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
 5 May 20:53:32 ntpdate[1864]: adjust time server 10.131.248.1 offset 0.000360 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28265192 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9
Creating target for build PACKAGEBUILD-28265192
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28265192
Starting target for build PACKAGEBUILD-28265192
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28265192 'deb http://ftpmaster.internal/ubuntu noble main universe'
Overriding sources.list in build-PACKAGEBUILD-28265192
RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28265192
Updating target for build PACKAGEBUILD-28265192
Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1401 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB]
Get:5 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB]
Fetched 23.2 MB in 3s (8937 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu
  g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base
  gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64
  libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64
  libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64
  libtirpc3t64 libunistring5 perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0
  libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4
  libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0
  liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2
  libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2
  libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1
  libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6
  libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl
  libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1
  libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login
  logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl
  optipng passwd patch perl perl-base pinentry-curses procps psmisc
  readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev
  systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux
  uuid-runtime xz-utils zlib1g
177 upgraded, 23 newly installed, 14 to remove and 0 not upgraded.
Need to get 121 MB of archives.
After this operation, 78.2 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1build1 [193 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1build1 [82.6 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libacl1 amd64 2.3.2-1build1 [16.8 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.4-2build2 [15.2 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build2 [8064 B]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build2 [70.0 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgcrypt20 amd64 1.10.3-2build1 [532 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 liblz4-1 amd64 1.9.4-1build1 [63.0 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B]
Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.38t64 amd64 5.38.2-3.2build2 [4873 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.38.2-3.2build2 [231 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.38.2-3.2build2 [1823 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B]
Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu8 [20.4 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu8 [2124 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu8 [3265 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu8 [682 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 255.4-1ubuntu8 [2067 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 255.4-1ubuntu8 [104 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 255.4-1ubuntu8 [11.9 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 255.4-1ubuntu8 [3471 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 255.4-1ubuntu8 [429 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu5 [51.9 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.3-5ubuntu5 [279 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2build1 [535 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3 [998 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libapt-pkg6.0t64 amd64 2.7.14build2 [985 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-14-base amd64 14-20240412-0ubuntu1 [47.6 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 14-20240412-0ubuntu1 [78.5 kB]
Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 14-20240412-0ubuntu1 [795 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 255.4-1ubuntu8 [174 kB]
Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB]
Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu2 [701 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-4build1 [56.5 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB]
Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B]
Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB]
Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 apt-utils amd64 2.7.14build2 [217 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 apt amd64 2.7.14build2 [1375 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86ubuntu1 [124 kB]
Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.3-5ubuntu5 [67.7 kB]
Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB]
Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB]
Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB]
Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB]
Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB]
Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B]
Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu10 [73.6 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17build1 [89.9 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.6ubuntu6 [1283 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1build1 [177 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 findutils amd64 4.9.0-5build1 [298 kB]
Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-4build1 [162 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB]
Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 sed amd64 4.9-2build1 [193 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B]
Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB]
Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2build1 [303 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 tzdata all 2024a-2ubuntu1 [273 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 psmisc amd64 23.7-1build1 [179 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 advancecomp amd64 2.5-1build1 [182 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB]
Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240412-0ubuntu1 [1175 kB]
Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB]
Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB]
Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240412-0ubuntu1 [147 kB]
Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240412-0ubuntu1 [28.9 kB]
Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240412-0ubuntu1 [10.4 kB]
Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240412-0ubuntu1 [3024 kB]
Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240412-0ubuntu1 [1313 kB]
Get:171 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240412-0ubuntu1 [1632 kB]
Get:172 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240412-0ubuntu1 [153 kB]
Get:173 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB]
Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240412-0ubuntu1 [2736 kB]
Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240412-0ubuntu1 [47.7 kB]
Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B]
Get:178 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB]
Get:179 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
Get:180 http://ftpmaster.internal/ubuntu noble/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB]
Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
Get:182 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB]
Get:183 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB]
Get:184 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB]
Get:185 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
Get:186 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
Get:187 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
Get:188 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
Get:189 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
Get:190 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
Get:191 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.6ubuntu6 [1074 kB]
Get:192 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.6ubuntu6 [268 kB]
Get:193 http://ftpmaster.internal/ubuntu noble/main amd64 patch amd64 2.7.6-7build3 [104 kB]
Get:194 http://ftpmaster.internal/ubuntu noble/main amd64 make amd64 4.3-4.1build2 [180 kB]
Get:195 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB]
Get:196 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.33-1 [32.4 kB]
Get:197 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.33-1 [67.2 kB]
Get:198 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB]
Get:199 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B]
Get:200 http://ftpmaster.internal/ubuntu noble/main amd64 lockfile-progs amd64 0.1.19build2 [8522 B]
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dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested:
 libnss-nisplus:amd64 depends on libtirpc3 (>= 1.0.2).

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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libdb5.3.
 libpam-modules:amd64 depends on libdb5.3.
 apt-utils depends on libdb5.3.

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dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libgdbm6 (>= 1.21).
 libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16).

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dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested:
 libperl5.36:amd64 depends on libgdbm-compat4 (>= 1.18-3).

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dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested:
 systemd depends on libssl3 (>= 3.0.0).

(Reading database ... 15600 files and directories currently installed.)
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dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty
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dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty
dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty
dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
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Current default time zone: 'Etc/UTC'
Local time is now:      Sun May  5 20:54:02 UTC 2024.
Universal Time is now:  Sun May  5 20:54:02 UTC 2024.
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Setting up g++-13 (13.2.0-23ubuntu4) ...
Setting up g++ (4:13.2.0-7ubuntu1) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for debianutils (5.17build1) ...
(Reading database ... 15822 files and directories currently installed.)
Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28265192 amd64 noble -c chroot:build-PACKAGEBUILD-28265192 --arch=amd64 --dist=noble --nolog -A seqan-raptor_3.0.1+ds-5.dsc
Initiating build PACKAGEBUILD-28265192 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-064.buildd

+==============================================================================+
| seqan-raptor 3.0.1+ds-5 (amd64)              Sun, 05 May 2024 20:54:07 +0000 |
+==============================================================================+

Package: seqan-raptor
Version: 3.0.1+ds-5
Source Version: 3.0.1+ds-5
Distribution: noble
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28265192/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/seqan-raptor-1HlskD/resolver-slpIE1' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

seqan-raptor_3.0.1+ds-5.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/seqan-raptor-1HlskD/seqan-raptor-3.0.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/seqan-raptor-1HlskD' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [960 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [529 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [604 B]
Fetched 2093 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion ca-certificates debconf-i18n krb5-locales
  libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev
  libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl
  libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev
  libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data
  cppreference-doc-en-html debhelper debugedit dh-autoreconf
  dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core
  fonts-dejavu-mono fonts-lmodern fonts-urw-base35 gettext gettext-base
  ghostscript googletest groff-base intltool-debian libapache-pom-java
  libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data
  libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev
  libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java
  libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64
  libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfmt9
  libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64
  libgraphite2-3 libgs-common libgs10 libgs10-common libgtest-dev
  libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap2 liblerc4
  libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7
  libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0
  libpkgconf3 libpotrace0 libpsl5t64 libptexenc1 libpython3-stdlib
  libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2
  libsasl2-modules-db libseqan3-dev libsharpyuv0 libsimde-dev libsm6 libssh-4
  libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool
  libuchardet0 libuv1t64 libwebp7 libx11-6 libx11-data libxapian30 libxau6
  libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2
  libxmu6 libxpm4 libxrender1 libxt6t64 libxxhash-dev libyaml-cpp-dev
  libyaml-cpp0.8 libzzip-0-13t64 lynx lynx-common m4 man-db media-types
  netbase pkg-config pkgconf pkgconf-bin po-debconf poppler-data
  preview-latex-style python3 python3-minimal python3.12 python3.12-minimal
  rapidjson-dev t1utils tex-common texlive-base texlive-binaries
  texlive-font-utils texlive-fonts-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures
  texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
  elpa-cmake-mode ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui
  graphviz fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc
  libasprintf-dev libgettextpo-dev groff lrzip libavalon-framework-java
  libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor
  libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc
  apparmor less libmail-box-perl poppler-utils fonts-japanese-mincho
  | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk
  python3-venv python3.12-venv python3.12-doc binfmt-support rapidjson-doc
  perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview
  lcdf-typetools psutils texlive-fonts-recommended-doc texlive-latex-base-doc
  wp2latex python3-pygments icc-profiles libfile-which-perl
  texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc
  texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex
  default-jre-headless
Recommended packages:
  bzip2-doc dbus libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs fonts-droid-fallback libldap-common publicsuffix
  libsasl2-modules libltdl-dev mailcap libmail-sendmail-perl lmodern dvisvgm
  ps2eps tex-gyre tipa default-jre libspreadsheet-parseexcel-perl ruby tk
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data
  cppreference-doc-en-html debhelper debugedit dh-autoreconf
  dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core
  fonts-dejavu-mono fonts-lmodern fonts-urw-base35 gettext gettext-base
  ghostscript googletest groff-base intltool-debian libapache-pom-java
  libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data
  libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev
  libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java
  libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64
  libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfmt9
  libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64
  libgraphite2-3 libgs-common libgs10 libgs10-common libgtest-dev
  libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap2 liblerc4
  libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7
  libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0
  libpkgconf3 libpotrace0 libpsl5t64 libptexenc1 libpython3-stdlib
  libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2
  libsasl2-modules-db libseqan3-dev libsharpyuv0 libsimde-dev libsm6 libssh-4
  libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool
  libuchardet0 libuv1t64 libwebp7 libx11-6 libx11-data libxapian30 libxau6
  libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2
  libxmu6 libxpm4 libxrender1 libxt6t64 libxxhash-dev libyaml-cpp-dev
  libyaml-cpp0.8 libzzip-0-13t64 lynx lynx-common m4 man-db media-types
  netbase pkg-config pkgconf pkgconf-bin po-debconf poppler-data
  preview-latex-style python3 python3-minimal python3.12 python3.12-minimal
  rapidjson-dev sbuild-build-depends-main-dummy t1utils tex-common
  texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures texlive-plain-generic ucf x11-common xdg-utils
  xfonts-encodings xfonts-utils zlib1g-dev
0 upgraded, 164 newly installed, 0 to remove and 0 not upgraded.
Need to get 259 MB of archives.
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Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12-minimal amd64 3.12.3-1 [2343 kB]
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Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 media-types all 10.1.0 [27.5 kB]
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Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu3 [762 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 ucf all 3.0043+nmu1 [56.5 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic-mgc amd64 1:5.45-3build1 [307 kB]
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Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.8-1build1 [75.3 kB]
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Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libpsl5t64 amd64 0.21.2-1.1build1 [57.1 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libuv1t64 amd64 1.48.0-1.1build1 [97.3 kB]
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Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-6 amd64 2:1.8.7-1build1 [650 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libxext6 amd64 2:1.3.4-1build2 [30.4 kB]
Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 man-db amd64 2.12.0-4build2 [1237 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14ubuntu2 [422 kB]
Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive13t64 amd64 3.7.2-2 [381 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2build2 [331 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu3 [20.3 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu3 [53.2 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libldap2 amd64 2.6.7+dfsg-1~exp1ubuntu8 [195 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build7 [56.3 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libssh-4 amd64 0.10.6-2build2 [188 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10 [340 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 librhash0 amd64 1.4.3-3build1 [129 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 cmake-data all 3.28.3-1build7 [2155 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 cmake amd64 3.28.3-1build7 [11.2 MB]
Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 lynx-common all 2.9.0rel.0-2build2 [1006 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 lynx amd64 2.9.0rel.0-2build2 [715 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 cppreference-doc-en-html all 20170409-2 [3530 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7build1 [166 kB]
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Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
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Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5build2 [46.1 kB]
Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1build6 [115 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14ubuntu2 [864 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.14.1ubuntu5 [869 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libllvm18 amd64 1:18.1.3-1 [27.5 MB]
Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libclang-cpp18 amd64 1:18.1.3-1 [13.5 MB]
Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libclang1-18 amd64 1:18.1.3-1 [7815 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libfmt9 amd64 9.1.0+ds1-2 [63.0 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libxapian30 amd64 1.4.22-1build1 [716 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 doxygen amd64 1.9.8+ds-2build5 [5201 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
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Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
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Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
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Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB]
Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4build3 [15.8 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4build3 [230 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu2 [199 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libgs10 amd64 10.02.1~dfsg1-0ubuntu7 [3896 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 ghostscript amd64 10.02.1~dfsg1-0ubuntu7 [43.4 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 googletest all 1.14.0-1 [521 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libapache-pom-java all 29-2 [5284 B]
Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5.1 [33.6 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1ubuntu2 [16.2 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1ubuntu2 [5756 B]
Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 rapidjson-dev all 1.1.0+dfsg2-7.2 [96.7 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 libcereal-dev amd64 1.3.2+dfsg-5 [222 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 libgtest-dev amd64 1.14.0-1 [268 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9build3 [63.0 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B]
Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2build1 [30.7 kB]
Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9build3 [40.4 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libseqan3-dev all 3.3.0+ds-1 [748 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 libsimde-dev all 0.7.2-6 [261 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9build3 [59.6 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9build3 [123 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1build2 [187 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1build1 [32.4 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash-dev amd64 0.8.2-2build1 [76.5 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6build1 [115 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libyaml-cpp-dev amd64 0.8.0+dfsg-6build1 [188 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2build1 [28.1 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2build1 [20.7 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2build1 [16.8 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2build1 [7264 B]
Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 preview-latex-style all 13.2-1 [347 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9build3 [8529 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB]
Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-font-utils all 2023.20240207-1 [7035 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-fonts-recommended all 2023.20240207-1 [4973 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 libfontbox-java all 1:1.8.16-5 [208 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 libpdfbox-java all 1:1.8.16-5 [5521 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-recommended all 2023.20240207-1 [8826 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-pictures all 2023.20240207-1 [16.7 MB]
Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-extra all 2023.20240207-1 [19.2 MB]
Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-plain-generic all 2023.20240207-1 [29.0 MB]
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Setting up libldap2:amd64 (2.6.7+dfsg-1~exp1ubuntu8) ...
Setting up libsynctex2:amd64 (2023.20230311.66589-9build3) ...
Setting up libbz2-dev:amd64 (1.0.8-5.1) ...
Setting up libpotrace0:amd64 (1.16-2build1) ...
Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:amd64 (1.1.29build1) ...

Creating config file /etc/papersize with new version
Setting up libice6:amd64 (2:1.0.10-1build3) ...
Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu6) ...
Setting up libxcb1:amd64 (1.15-1ubuntu2) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ...
Setting up libgtest-dev:amd64 (1.14.0-1) ...
Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10) ...
Setting up libtool (2.4.7-7build1) ...
Setting up libxcb-render0:amd64 (1.15-1ubuntu2) ...
Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
Setting up python3.12 (3.12.3-1) ...
Setting up libedit2:amd64 (3.1-20230828-1build1) ...
Setting up libcommons-parent-java (56-1) ...
Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ...
Setting up libcereal-dev (1.3.2+dfsg-5) ...
Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
Setting up libxcb-shm0:amd64 (1.15-1ubuntu2) ...
Setting up libpaper-utils (1.1.29build1) ...
Setting up xfonts-utils (1:7.7+6build3) ...
Setting up pkgconf:amd64 (1.8.1-2build1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libptexenc1:amd64 (2023.20230311.66589-9build3) ...
Setting up cppreference-doc-en-html (20170409-2) ...
Setting up pkg-config:amd64 (1.8.1-2build1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up groff-base (1.23.0-3build2) ...
Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu2) ...
Setting up libx11-6:amd64 (2:1.8.7-1build1) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
Setting up libsm6:amd64 (2:1.2.3-1build3) ...
Setting up libarchive13t64:amd64 (3.7.2-2) ...
Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ...
Setting up libpython3-stdlib:amd64 (3.12.3-0ubuntu1) ...
Setting up libllvm18:amd64 (1:18.1.3-1) ...
Setting up libclang1-18 (1:18.1.3-1) ...
Setting up libxpm4:amd64 (1:3.5.17-1build2) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up preview-latex-style (13.2-1) ...
Setting up libseqan3-dev (3.3.0+ds-1) ...
Setting up libxext6:amd64 (2:1.3.4-1build2) ...
Setting up python3 (3.12.3-0ubuntu1) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up man-db (2.12.0-4build2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer.
Setting up libcairo2:amd64 (1.18.0-3build1) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
Setting up cmake (3.28.3-1build7) ...
Setting up libclang-cpp18 (1:18.1.3-1) ...
Setting up libcups2t64:amd64 (2.4.7-1.2ubuntu7) ...
Setting up libgs10-common (10.02.1~dfsg1-0ubuntu7) ...
Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
Setting up libxi6:amd64 (2:1.8.1-1build1) ...
Setting up debhelper (13.14.1ubuntu5) ...
Setting up libxaw7:amd64 (2:1.0.14-1build2) ...
Setting up doxygen (1.9.8+ds-2build5) ...
Setting up texlive-binaries (2023.20230311.66589-9build3) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up texlive-base (2023.20240207-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libgs10:amd64 (10.02.1~dfsg1-0ubuntu7) ...
Setting up texlive-plain-generic (2023.20240207-1) ...
Setting up texlive-font-utils (2023.20240207-1) ...
Setting up ghostscript (10.02.1~dfsg1-0ubuntu7) ...
Setting up texlive-latex-base (2023.20240207-1) ...
Setting up texlive-latex-recommended (2023.20240207-1) ...
Setting up texlive-pictures (2023.20240207-1) ...
Setting up texlive-fonts-recommended (2023.20240207-1) ...
Setting up texlive-latex-extra (2023.20240207-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for systemd (255.4-1ubuntu8) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 amd64 (x86_64)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build7 cmake-data_3.28.3-1build7 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4 cpp-x86-64-linux-gnu_4:13.2.0-7ubuntu1 cppreference-doc-en-html_20170409-2 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 doxygen_1.9.8+ds-2build5 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu4 g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4 g++-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu4 gcc-13-base_13.2.0-23ubuntu4 gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4 gcc-14-base_14-20240412-0ubuntu1 gcc-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 ghostscript_10.02.1~dfsg1-0ubuntu7 googletest_1.14.0-1 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 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libxdmcp6_1:1.1.3-0ubuntu6 libxext6_2:1.3.4-1build2 libxi6_2:1.8.1-1build1 libxml2_2.9.14+dfsg-1.3ubuntu3 libxmu6_2:1.1.3-3build2 libxpm4_1:3.5.17-1build2 libxrender1_1:0.9.10-1.1build1 libxt6t64_1:1.2.1-1.2build1 libxxhash-dev_0.8.2-2build1 libxxhash0_0.8.2-2build1 libyaml-cpp-dev_0.8.0+dfsg-6build1 libyaml-cpp0.8_0.8.0+dfsg-6build1 libzstd1_1.5.5+dfsg2-2build1 libzzip-0-13t64_0.13.72+dfsg.1-1.2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 lynx_2.9.0rel.0-2build2 lynx-common_2.9.0rel.0-2build2 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 media-types_10.1.0 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkg-config_1.8.1-2build1 pkgbinarymangler_154 pkgconf_1.8.1-2build1 pkgconf-bin_1.8.1-2build1 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 poppler-data_0.4.12-1 preview-latex-style_13.2-1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 python3_3.12.3-0ubuntu1 python3-minimal_3.12.3-0ubuntu1 python3.12_3.12.3-1 python3.12-minimal_3.12.3-1 rapidjson-dev_1.1.0+dfsg2-7.2 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 t1utils_1.41-4build3 tar_1.35+dfsg-3build1 tex-common_6.18 texlive-base_2023.20240207-1 texlive-binaries_2023.20230311.66589-9build3 texlive-font-utils_2023.20240207-1 texlive-fonts-recommended_2023.20240207-1 texlive-latex-base_2023.20240207-1 texlive-latex-extra_2023.20240207-1 texlive-latex-recommended_2023.20240207-1 texlive-pictures_2023.20240207-1 texlive-plain-generic_2023.20240207-1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 x11-common_1:7.7+23ubuntu3 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build3 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: seqan-raptor
Binary: seqan-raptor, seqan-raptor-doc
Architecture: any all
Version: 3.0.1+ds-5
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://github.com/seqan/raptor
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor
Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git
Testsuite: autopkgtest
Testsuite-Triggers: cmake, cwltool, g++, libgtest-dev, libseqan3-dev, libsimde-dev, libxxhash-dev, libyaml-cpp-dev, nodejs, patch, pkg-config, python3-setuptools
Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen <!nodoc>, cppreference-doc-en-html <!nodoc>, texlive-font-utils <!nodoc>, texlive-latex-base <!nodoc>, texlive-latex-recommended <!nodoc>, texlive-latex-extra <!nodoc>, texlive-plain-generic <!nodoc>, texlive-fonts-recommended <!nodoc>, ghostscript <!nodoc>
Package-List:
 seqan-raptor deb science optional arch=any
 seqan-raptor-doc deb doc optional arch=all profile=!nodoc
Checksums-Sha1:
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 7ef2860a79f904e93fc00eac3cc6857fb6854b91 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz
Checksums-Sha256:
 3fb5f987f3c0e678d5de41ab3f9f66eae37ba5993edb294caa9e8f2c6132a55d 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz
 f841e6322018fe1148e249c14bd6807ea1354c220c7d3be298785372d0a7c5c2 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz
Files:
 650d23e7c16c308dcc95dbc6d302df1f 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz
 f64b145c2eb3faeda15aab4b80c083bd 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz

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gpgv: Signature made Wed Sep  6 13:05:19 2023 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found
dpkg-source: info: extracting seqan-raptor in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking seqan-raptor_3.0.1+ds.orig.tar.xz
dpkg-source: info: unpacking seqan-raptor_3.0.1+ds-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying privacy
dpkg-source: info: applying chopper_no_test
dpkg-source: info: applying debian_seqan3
dpkg-source: info: applying debian_xxhash
dpkg-source: info: applying debian_cppreference
dpkg-source: info: applying doxygen_update

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28265192
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28265192
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28265192
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@lcy02-amd64-064.buildd> -b -rfakeroot
dpkg-buildpackage: info: source package seqan-raptor
dpkg-buildpackage: info: source version 3.0.1+ds-5
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
dh_auto_clean --sourcedirectory=test/unit --builddirectory build_unit
#dh_auto_clean --sourcedirectory=test/performance --builddirectory build_performance
#dh_auto_clean --sourcedirectory=test/header --builddirectory build_header
dh_auto_clean --sourcedirectory=test/snippet --builddirectory build_snippet
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_clean-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --indep --builddir doc_build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF
	cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ..
-- The CXX compiler identification is GNU 13.2.0
-- The C compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Finding RAPTOR and checking requirements:
--   RAPTOR include dir found:   /<<PKGBUILDDIR>>/include
--   Detected as running from a repository checkout…
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/chopper/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/test/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/submodules/lemon/include
--   C++ Standard-20 support:    via -std=c++20
--   OpenMP Support:             via -fopenmp
--   SIMD-OpenMP Support:        via -fopenmp-simd
--   Suppressing GCC 4 warnings: via -Wno-psabi
--   Optimize build:             via -mpopcnt
--   Link Time Optimization:     enabled
--   Binary-stripping:           disabled
--   Thread support:             builtin
--   Optional dependency:        ZLIB-1.3 found
--   Optional dependency:        BZip2-1.0.8 found
--   Optional dependency:        libexecinfo found
-- Found Raptor: /<<PKGBUILDDIR>>/include  
-- Finding program ccache
-- Finding program ccache - Failed
-- You can run `make` to build the application.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 
-- Checking for module 'libxxhash'
--   Found libxxhash, version 0.8.2
-- Configuring done (4.9s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
dh_auto_configure --sourcedirectory=test/unit --builddirectory build_unit -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF
	cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/unit
-- The CXX compiler identification is GNU 13.2.0
-- The C compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Finding RAPTOR and checking requirements:
--   RAPTOR include dir found:   /<<PKGBUILDDIR>>/include
--   Detected as running from a repository checkout…
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/chopper/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/test/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/submodules/lemon/include
--   C++ Standard-20 support:    via -std=c++20
--   OpenMP Support:             via -fopenmp
--   SIMD-OpenMP Support:        via -fopenmp-simd
--   Suppressing GCC 4 warnings: via -Wno-psabi
--   Optimize build:             via -mpopcnt
--   Link Time Optimization:     enabled
--   Binary-stripping:           disabled
--   Thread support:             builtin
--   Optional dependency:        ZLIB-1.3 found
--   Optional dependency:        BZip2-1.0.8 found
--   Optional dependency:        libexecinfo found
-- Found Raptor: /<<PKGBUILDDIR>>/include  
-- Finding program ccache
-- Finding program ccache - Failed
-- You can run `make` to build the application.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 
-- Checking for module 'libxxhash'
--   Found libxxhash, version 0.8.2
--   Test dependency:            Google Test 1.14.0 found.
-- Configuring done (4.9s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/build_unit
#dh_auto_configure --sourcedirectory=test/performance --builddirectory build_performance -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF
#dh_auto_configure --sourcedirectory=test/header --builddirectory build_header -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF
dh_auto_configure --sourcedirectory=test/snippet --builddirectory build_snippet -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF
	cd build_snippet && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/snippet
-- The CXX compiler identification is GNU 13.2.0
-- The C compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Finding RAPTOR and checking requirements:
--   RAPTOR include dir found:   /<<PKGBUILDDIR>>/include
--   Detected as running from a repository checkout…
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/chopper/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/sharg-parser/test/include
--     …adding submodule include:  /<<PKGBUILDDIR>>/lib/submodules/lemon/include
--   C++ Standard-20 support:    via -std=c++20
--   OpenMP Support:             via -fopenmp
--   SIMD-OpenMP Support:        via -fopenmp-simd
--   Suppressing GCC 4 warnings: via -Wno-psabi
--   Optimize build:             via -mpopcnt
--   Link Time Optimization:     enabled
--   Binary-stripping:           disabled
--   Thread support:             builtin
--   Optional dependency:        ZLIB-1.3 found
--   Optional dependency:        BZip2-1.0.8 found
--   Optional dependency:        libexecinfo found
-- Found Raptor: /<<PKGBUILDDIR>>/include  
-- Finding program ccache
-- Finding program ccache - Failed
-- You can run `make` to build the application.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 
-- Checking for module 'libxxhash'
--   Found libxxhash, version 0.8.2
--   Test dependency:            Google Test 1.14.0 found.
-- Configuring done (5.0s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /<<PKGBUILDDIR>>/build_snippet
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_configure-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure --sourcedirectory=test/documentation --builddirectory doc_build -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<PKGBUILDDIR>>/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON
	cd doc_build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON ../test/documentation
-- Searching for doxygen.
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot
-- Could not find dot tool. Disabling dot support.
-- Configuring doc.
-- Add doc test.
-- Configuring done (0.1s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED
    RAPTOR_NATIVE_BUILD
    RAPTOR_STRIP_BINARY
    RAPTOR_SUBMODULES_DIR
    build_search


-- Build files have been written to: /<<PKGBUILDDIR>>/doc_build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --arch
	cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend
make  -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend
make  -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend
make  -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/upgrade /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/upgrade /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/argument_parsing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color="
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/lib/chopper /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/prepare /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/prepare /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build
[  1%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
[  1%] Built target xxhash_project
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/build/hibf /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color="
[  3%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /<<PKGBUILDDIR>>/src/upgrade/raptor_upgrade.cpp
[  5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /<<PKGBUILDDIR>>/src/prepare/compute_minimiser.cpp
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[  7%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/bin_size_in_bits.cpp
[  9%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/build_parsing.cpp
[ 11%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Linking CXX static library ../../lib/libraptor_prepare.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
/usr/bin/ranlib ../../lib/libraptor_prepare.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 13%] Built target raptor_prepare
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/search /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 15%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /<<PKGBUILDDIR>>/src/search/raptor_search.cpp
[ 17%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/compute_kmers.cpp
[ 19%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_hibf.cpp
[ 21%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX static library ../../lib/libraptor_upgrade.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
/usr/bin/ranlib ../../lib/libraptor_upgrade.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 23%] Built target raptor_upgrade
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/threshold /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 25%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/multiple_error_model.cpp
[ 27%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_error_model.cpp
[ 29%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_indirect_error_model.cpp
[ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 33%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/pascal_row.cpp
[ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_correction.cpp
[ 37%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_ibf.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_threshold.cpp
[ 41%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp
[ 43%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/compute_bin_size.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 45%] Linking CXX static library ../../lib/libraptor_threshold.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
/usr/bin/ranlib ../../lib/libraptor_threshold.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 45%] Built target raptor_threshold
[ 47%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/init_shared_meta.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/insert_into_ibf.cpp
[ 50%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/parse_bin_path.cpp
[ 52%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_partitioned_ibf.cpp
[ 54%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/prepare_parsing.cpp
[ 56%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/hierarchical_build.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 58%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:17:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/algorithm:60,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:13:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 60%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/search_parsing.cpp
[ 62%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
[ 64%] Linking CXX static library ../../lib/libraptor_search.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
/usr/bin/ranlib ../../lib/libraptor_search.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 64%] Built target raptor_search
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 66%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper_layout.cpp
[ 68%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/read_chopper_pack_file.hpp:17,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_parent_kmers.cpp
[ 72%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 74%] Linking CXX static library ../../../lib/libchopper_layout_lib.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
/usr/bin/ranlib ../../../lib/libchopper_layout_lib.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 74%] Built target chopper_layout_lib
[ 76%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/upgrade_parsing.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_user_bins.hpp:15,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX static library ../../../lib/libraptor_build_hibf.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 78%] Built target raptor_build_hibf
make  -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/build /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 80%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/build_ibf.cpp
make  -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src/layout /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/layout /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 82%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /<<PKGBUILDDIR>>/src/layout/raptor_layout.cpp
[ 84%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /<<PKGBUILDDIR>>/src/build/max_count_per_partition.cpp
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 86%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper.cpp
[ 88%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/raptor_build.cpp
[ 90%] Linking CXX static library ../../lib/libraptor_argument_parsing.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a
[ 92%] Linking CXX static library ../../lib/libraptor_build.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1
[ 92%] Built target raptor_argument_parsing
/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o
/usr/bin/ranlib ../../lib/libraptor_build.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 92%] Built target raptor_build
[ 94%] Linking CXX static library ../../lib/libraptor_layout.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o
/usr/bin/ranlib ../../lib/libraptor_layout.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 94%] Built target raptor_layout
make  -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make  -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 96%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /<<PKGBUILDDIR>>/src/raptor.cpp
[ 98%] Linking CXX executable ../bin/raptor
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor  ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 98%] Built target raptor
[100%] Linking CXX executable ../../../bin/chopper
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper  ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[100%] Built target chopper
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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obj-*/bin/raptor --export-help man > debian/raptor.1
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obj-*/bin/raptor search --export-help man > debian/raptor-search.1
obj-*/bin/raptor layout --export-help man > debian/raptor-layout.1
obj-*/bin/raptor prepare --export-help man > debian/raptor-prepare.1
obj-*/bin/raptor upgrade --export-help man > debian/raptor-upgrade.1
obj-*/bin/raptor build --export-help cwl > debian/raptor-build.cwl
obj-*/bin/raptor search --export-help cwl > debian/raptor-search.cwl
obj-*/bin/raptor layout --export-help cwl > debian/raptor-layout.cwl
obj-*/bin/raptor prepare --export-help cwl > debian/raptor-prepare.cwl
obj-*/bin/raptor upgrade --export-help cwl > debian/raptor-upgrade.cwl
dh_auto_build --arch --builddirectory build_unit
	cd build_unit && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
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make  -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend
make  -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend
make  -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/lib/chopper /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/prepare /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/prepare /<<PKGBUILDDIR>>/build_unit/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color="
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/upgrade /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/upgrade /<<PKGBUILDDIR>>/build_unit/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/argument_parsing /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/argument_parsing /<<PKGBUILDDIR>>/build_unit/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color="
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make  -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[  1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /<<PKGBUILDDIR>>/src/upgrade/raptor_upgrade.cpp
[  1%] Built target xxhash_project
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend
[  2%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /<<PKGBUILDDIR>>/src/prepare/compute_minimiser.cpp
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/build/hibf /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/build/hibf /<<PKGBUILDDIR>>/build_unit/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color="
[  3%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[  5%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/bin_size_in_bits.cpp
[  6%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/build_parsing.cpp
[  7%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  8%] Linking CXX static library ../../lib/libraptor_prepare.a
cd /<<PKGBUILDDIR>>/build_unit/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
/usr/bin/ranlib ../../lib/libraptor_prepare.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[  8%] Built target raptor_prepare
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/search /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/search /<<PKGBUILDDIR>>/build_unit/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 10%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /<<PKGBUILDDIR>>/src/search/raptor_search.cpp
[ 11%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/compute_kmers.cpp
[ 12%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_hibf.cpp
[ 13%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Linking CXX static library ../../lib/libraptor_upgrade.a
cd /<<PKGBUILDDIR>>/build_unit/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
/usr/bin/ranlib ../../lib/libraptor_upgrade.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 15%] Built target raptor_upgrade
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/threshold /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/threshold /<<PKGBUILDDIR>>/build_unit/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 16%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/multiple_error_model.cpp
[ 17%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_error_model.cpp
[ 18%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_indirect_error_model.cpp
[ 20%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 21%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/pascal_row.cpp
[ 22%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_correction.cpp
[ 24%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_ibf.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_threshold.cpp
[ 26%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/compute_bin_size.cpp
[ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 29%] Linking CXX static library ../../lib/libraptor_threshold.a
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
/usr/bin/ranlib ../../lib/libraptor_threshold.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 29%] Built target raptor_threshold
[ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/insert_into_ibf.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 32%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/init_shared_meta.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/hierarchical_build.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp
[ 35%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_partitioned_ibf.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:17:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/algorithm:60,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:13:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
[ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp
[ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_parent_kmers.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 40%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper_layout.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/read_chopper_pack_file.hpp:17,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 43%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/parse_bin_path.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_user_bins.hpp:15,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 44%] Linking CXX static library ../../../lib/libraptor_build_hibf.a
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 44%] Built target raptor_build_hibf
make  -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/build /<<PKGBUILDDIR>>/build_unit/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 45%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/build_ibf.cpp
[ 46%] Linking CXX static library ../../lib/libraptor_search.a
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
[ 48%] Linking CXX static library ../../../lib/libchopper_layout_lib.a
cd /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
/usr/bin/ranlib ../../../lib/libchopper_layout_lib.a
/usr/bin/ranlib ../../lib/libraptor_search.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 48%] Built target chopper_layout_lib
[ 49%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/prepare_parsing.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 49%] Built target raptor_search
make  -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src/layout /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src/layout /<<PKGBUILDDIR>>/build_unit/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 50%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /<<PKGBUILDDIR>>/src/layout/raptor_layout.cpp
[ 51%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/search_parsing.cpp
[ 53%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /<<PKGBUILDDIR>>/src/build/max_count_per_partition.cpp
[ 54%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/raptor_build.cpp
[ 55%] Linking CXX static library ../../lib/libraptor_build.a
cd /<<PKGBUILDDIR>>/build_unit/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o
/usr/bin/ranlib ../../lib/libraptor_build.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 55%] Built target raptor_build
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 56%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper.cpp
[ 58%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/upgrade_parsing.cpp
[ 59%] Linking CXX static library ../../lib/libraptor_layout.a
cd /<<PKGBUILDDIR>>/build_unit/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o
/usr/bin/ranlib ../../lib/libraptor_layout.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 59%] Built target raptor_layout
[ 60%] Linking CXX static library ../../lib/libraptor_argument_parsing.a
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_unit/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 60%] Built target raptor_argument_parsing
make  -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/src /<<PKGBUILDDIR>>/build_unit/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 62%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /<<PKGBUILDDIR>>/src/raptor.cpp
[ 63%] Linking CXX executable ../bin/raptor
cd /<<PKGBUILDDIR>>/build_unit/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor  ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so 
[ 64%] Linking CXX executable ../../../bin/chopper
cd /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper  ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a 
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cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/api /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/api /<<PKGBUILDDIR>>/build_unit/api/CMakeFiles/issue_142.dir/DependInfo.cmake "--color="
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[ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/api && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /<<PKGBUILDDIR>>/test/unit/api/issue_142.cpp
[ 67%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/api && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -MF CMakeFiles/memory_usage.dir/memory_usage.cpp.o.d -o CMakeFiles/memory_usage.dir/memory_usage.cpp.o -c /<<PKGBUILDDIR>>/test/unit/api/memory_usage.cpp
[ 68%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/api && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o -MF CMakeFiles/validate_shape.dir/validate_shape.cpp.o.d -o CMakeFiles/validate_shape.dir/validate_shape.cpp.o -c /<<PKGBUILDDIR>>/test/unit/api/validate_shape.cpp
[ 69%] Linking CXX executable memory_usage
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/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/memory_usage.dir/memory_usage.cpp.o -o memory_usage  ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
[ 70%] Linking CXX executable issue_142
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cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/argument_parsing /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing/CMakeFiles/options_test.dir/DependInfo.cmake "--color="
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[ 72%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o -MF CMakeFiles/options_test.dir/options_test.cpp.o.d -o CMakeFiles/options_test.dir/options_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/argument_parsing/options_test.cpp
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cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/build /<<PKGBUILDDIR>>/build_unit/cli/build/CMakeFiles/build_hibf_chopper_test.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 73%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -MF CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o.d -o CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/build/build_hibf_chopper_test.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 73%] Built target chopper
make  -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/build /<<PKGBUILDDIR>>/build_unit/cli/build/CMakeFiles/build_hibf_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 74%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -MF CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o.d -o CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/build/build_hibf_test.cpp
[ 75%] Linking CXX executable build_hibf_chopper_test
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_chopper_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -o build_hibf_chopper_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
[ 77%] Linking CXX executable options_test
cd /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/options_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/options_test.dir/options_test.cpp.o -o options_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 77%] Built target build_hibf_chopper_test
make  -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/build /<<PKGBUILDDIR>>/build_unit/cli/build/CMakeFiles/build_ibf_compressed_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 78%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -MF CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o.d -o CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/build/build_ibf_compressed_test.cpp
[ 79%] Linking CXX executable build_hibf_test
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -o build_hibf_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 79%] Built target options_test
make  -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/build /<<PKGBUILDDIR>>/build_unit/cli/build/CMakeFiles/build_ibf_partitioned_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 81%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -MF CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/build/build_ibf_partitioned_test.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 81%] Built target build_hibf_test
make  -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/build /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/build /<<PKGBUILDDIR>>/build_unit/cli/build/CMakeFiles/build_ibf_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 82%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -MF CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o.d -o CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/build/build_ibf_test.cpp
[ 83%] Linking CXX executable build_ibf_compressed_test
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_compressed_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -o build_ibf_compressed_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
[ 84%] Linking CXX executable build_ibf_partitioned_test
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_partitioned_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -o build_ibf_partitioned_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/search /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/search /<<PKGBUILDDIR>>/build_unit/cli/search/CMakeFiles/search_hibf_test.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 86%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -MF CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o.d -o CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/search/search_hibf_test.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 86%] Built target build_ibf_partitioned_test
make  -f cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/search /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/search /<<PKGBUILDDIR>>/build_unit/cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 87%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/search/search_hibf_preprocessing_test.cpp
[ 88%] Linking CXX executable validate_shape
cd /<<PKGBUILDDIR>>/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate_shape.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/validate_shape.dir/validate_shape.cpp.o -o validate_shape  ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
[ 89%] Linking CXX executable build_ibf_test
cd /<<PKGBUILDDIR>>/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -o build_ibf_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 89%] Built target build_ibf_test
make  -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/search /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/search /<<PKGBUILDDIR>>/build_unit/cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 91%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -MF CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o.d -o CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/search/search_ibf_preprocessing_test.cpp
[ 92%] Linking CXX executable search_hibf_test
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_hibf_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -o search_hibf_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 92%] Built target validate_shape
make  -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/search /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/search /<<PKGBUILDDIR>>/build_unit/cli/search/CMakeFiles/search_ibf_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 93%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -MF CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o.d -o CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/search/search_ibf_test.cpp
[ 94%] Linking CXX executable search_hibf_preprocessing_test
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_hibf_preprocessing_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -o search_hibf_preprocessing_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 94%] Built target search_hibf_test
make  -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
cd /<<PKGBUILDDIR>>/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/unit /<<PKGBUILDDIR>>/test/unit/cli/upgrade /<<PKGBUILDDIR>>/build_unit /<<PKGBUILDDIR>>/build_unit/cli/upgrade /<<PKGBUILDDIR>>/build_unit/cli/upgrade/CMakeFiles/upgrade_test.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
make  -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
[ 96%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o
cd /<<PKGBUILDDIR>>/build_unit/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/<<PKGBUILDDIR>>/build_unit/bin/\" -DDATADIR=\"/<<PKGBUILDDIR>>/build_unit/data/\" -DOUTPUTDIR=\"/<<PKGBUILDDIR>>/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -Werror -Wno-interference-size -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -MF CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o.d -o CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -c /<<PKGBUILDDIR>>/test/unit/cli/upgrade/upgrade_test.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 96%] Built target search_hibf_preprocessing_test
[ 97%] Linking CXX executable search_ibf_preprocessing_test
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_preprocessing_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -o search_ibf_preprocessing_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
[ 98%] Linking CXX executable search_ibf_test
cd /<<PKGBUILDDIR>>/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -o search_ibf_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
[ 98%] Built target search_ibf_preprocessing_test
[100%] Linking CXX executable upgrade_test
cd /<<PKGBUILDDIR>>/build_unit/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/upgrade_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -o upgrade_test  ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest 
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[100%] Built target search_ibf_test
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[100%] Built target upgrade_test
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#dh_auto_build --arch --builddirectory build_performance
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	cd build_snippet && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
/usr/bin/cmake -S/<<PKGBUILDDIR>>/test/snippet -B/<<PKGBUILDDIR>>/build_snippet --check-build-system CMakeFiles/Makefile.cmake 0
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make  -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend
make  -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend
make  -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/lib/chopper /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color="
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/upgrade /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/upgrade /<<PKGBUILDDIR>>/build_snippet/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/prepare /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/prepare /<<PKGBUILDDIR>>/build_snippet/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color="
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cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/argument_parsing /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color="
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make  -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[  1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /<<PKGBUILDDIR>>/src/upgrade/raptor_upgrade.cpp
[  1%] Built target xxhash_project
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/build/hibf /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/build/hibf /<<PKGBUILDDIR>>/build_snippet/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color="
[  3%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o
[  5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
cd /<<PKGBUILDDIR>>/build_snippet/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /<<PKGBUILDDIR>>/src/prepare/compute_minimiser.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[  6%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/bin_size_in_bits.cpp
[  8%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/build_parsing.cpp
[ 10%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Linking CXX static library ../../lib/libraptor_prepare.a
cd /<<PKGBUILDDIR>>/build_snippet/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o
/usr/bin/ranlib ../../lib/libraptor_prepare.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 11%] Built target raptor_prepare
[ 13%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/compute_kmers.cpp
[ 15%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 18%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16,
                 from /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/construct_ibf.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp:16:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/insert_into_ibf.cpp
[ 22%] Linking CXX static library ../../lib/libraptor_upgrade.a
cd /<<PKGBUILDDIR>>/build_snippet/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o
/usr/bin/ranlib ../../lib/libraptor_upgrade.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 22%] Built target raptor_upgrade
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/search /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/search /<<PKGBUILDDIR>>/build_snippet/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[ 23%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /<<PKGBUILDDIR>>/src/search/raptor_search.cpp
[ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 27%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_hibf.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/hierarchical_build.hpp:18,
                 from /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/compute_bin_size.cpp
[ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:17:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/algorithm:60,
                 from /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp:13:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp
[ 33%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp
[ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_parent_kmers.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp
In file included from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:28,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:13:
/<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   20 |       : public T, public std::iterator<std::input_iterator_tag, T> {
      |                               ^~~~~~~~
In file included from /usr/include/c++/13/bits/stl_algobase.h:65,
                 from /usr/include/c++/13/vector:62,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/core.h:45,
                 from /<<PKGBUILDDIR>>/lib/submodules/lemon/include/lemon/list_graph.h:26:
/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/read_chopper_pack_file.hpp:17,
                 from /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp:17:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/init_shared_meta.cpp
In file included from /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_user_bins.hpp:15,
                 from /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp:15:
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   27 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’
/<<PKGBUILDDIR>>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size]
   28 |     alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{};
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/parse_bin_path.cpp
[ 42%] Linking CXX static library ../../../lib/libraptor_build_hibf.a
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o
/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 42%] Built target raptor_build_hibf
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/threshold /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/threshold /<<PKGBUILDDIR>>/build_snippet/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[ 44%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/multiple_error_model.cpp
[ 45%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_error_model.cpp
[ 47%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_ibf.cpp
[ 49%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/one_indirect_error_model.cpp
[ 50%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/pascal_row.cpp
[ 52%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_correction.cpp
[ 54%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /<<PKGBUILDDIR>>/src/threshold/precompute_threshold.cpp
[ 55%] Linking CXX static library ../../lib/libraptor_threshold.a
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o
/usr/bin/ranlib ../../lib/libraptor_threshold.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 55%] Built target raptor_threshold
[ 57%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/prepare_parsing.cpp
[ 59%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/search_parsing.cpp
[ 61%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/search/search_partitioned_ibf.cpp
[ 62%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /<<PKGBUILDDIR>>/src/argument_parsing/upgrade_parsing.cpp
[ 64%] Linking CXX static library ../../lib/libraptor_search.a
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o
/usr/bin/ranlib ../../lib/libraptor_search.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 64%] Built target raptor_search
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[ 66%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper_layout.cpp
make  -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/build /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/build /<<PKGBUILDDIR>>/build_snippet/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[ 67%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /<<PKGBUILDDIR>>/src/build/build_ibf.cpp
[ 69%] Linking CXX static library ../../../lib/libchopper_layout_lib.a
cd /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o
/usr/bin/ranlib ../../../lib/libchopper_layout_lib.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
[ 69%] Built target chopper_layout_lib
[ 71%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /<<PKGBUILDDIR>>/src/build/max_count_per_partition.cpp
make  -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/src/layout /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/src/layout /<<PKGBUILDDIR>>/build_snippet/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make  -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
[ 72%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o
cd /<<PKGBUILDDIR>>/build_snippet/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /<<PKGBUILDDIR>>/src/layout/raptor_layout.cpp
[ 74%] Linking CXX static library ../../lib/libraptor_argument_parsing.a
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/build_snippet/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o
/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
cd /<<PKGBUILDDIR>>/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/test/snippet /<<PKGBUILDDIR>>/lib/chopper/src /<<PKGBUILDDIR>>/build_snippet /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
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cd /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /<<PKGBUILDDIR>>/lib/chopper/src/chopper.cpp
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cd /<<PKGBUILDDIR>>/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /<<PKGBUILDDIR>>/src/build/raptor_build.cpp
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cd /<<PKGBUILDDIR>>/build_snippet/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/lib/chopper/src/../include -I/<<PKGBUILDDIR>>/lib/simde/simde -isystem /<<PKGBUILDDIR>>/lib/sharg-parser/test/include -isystem /<<PKGBUILDDIR>>/lib/robin-hood-hashing/src/include -isystem /<<PKGBUILDDIR>>/lib/chopper/include -isystem /<<PKGBUILDDIR>>/lib/tool_description_lib/src -isystem /<<PKGBUILDDIR>>/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /<<PKGBUILDDIR>>/src/raptor.cpp
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[ 88%] Building CXX object CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o
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/usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<<PKGBUILDDIR>>/lib/sharg-parser/include/ -I/<<PKGBUILDDIR>>/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper  ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a 
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_parent_kmers.hpp...
Parsing file /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_parent_kmers.hpp...
Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_user_bins.hpp...
Parsing file /<<PKGBUILDDIR>>/include/raptor/build/hibf/update_user_bins.hpp...
Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/index_factory.hpp...
Parsing file /<<PKGBUILDDIR>>/include/raptor/build/index_factory.hpp...
Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/max_count_per_partition.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/partition_config.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/raptor_build.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/build/store_index.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/call_parallel_on_bins.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/dna4_traits.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/file_reader.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/hierarchical_interleaved_bloom_filter.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/index.hpp...
Parsing file /<<PKGBUILDDIR>>/include/raptor/index.hpp...
Preprocessing /<<PKGBUILDDIR>>/include/raptor/layout/raptor_layout.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/prepare/compute_minimiser.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/prepare/cutoff.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/raptor.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/do_parallel.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/load_index.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/search.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/search_hibf.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/search_ibf.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/search_partitioned_ibf.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/search_singular_ibf.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/search/sync_out.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/strong_types.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/forward_strand_minimiser.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/logspace.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/multiple_error_model.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/one_indirect_error_model.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/pascal_row.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/precompute_threshold.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/threshold/threshold_parameters.hpp...
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Preprocessing /<<PKGBUILDDIR>>/include/raptor/upgrade/index_upgrader.hpp...
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Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/compute_bin_size.cpp...
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Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/init_shared_meta.cpp...
Parsing file /<<PKGBUILDDIR>>/src/argument_parsing/init_shared_meta.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/parse_bin_path.cpp...
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Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/prepare_parsing.cpp...
Parsing file /<<PKGBUILDDIR>>/src/argument_parsing/prepare_parsing.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/search_parsing.cpp...
Parsing file /<<PKGBUILDDIR>>/src/argument_parsing/search_parsing.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/argument_parsing/upgrade_parsing.cpp...
Parsing file /<<PKGBUILDDIR>>/src/argument_parsing/upgrade_parsing.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/build_ibf.cpp...
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Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/bin_size_in_bits.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/bin_size_in_bits.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/chopper_build.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/CMakeLists.txt...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/compute_kmers.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/compute_kmers.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/construct_ibf.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/create_ibfs_from_chopper_pack.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/hierarchical_build.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/insert_into_ibf.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/insert_into_ibf.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/loop_over_children.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_header.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/parse_chopper_pack_line.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/read_chopper_pack_file.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/update_parent_kmers.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/update_parent_kmers.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/hibf/update_user_bins.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/max_count_per_partition.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/max_count_per_partition.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/build/raptor_build.cpp...
Parsing file /<<PKGBUILDDIR>>/src/build/raptor_build.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/CMakeLists.txt...
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Preprocessing /<<PKGBUILDDIR>>/src/layout/raptor_layout.cpp...
Parsing file /<<PKGBUILDDIR>>/src/layout/raptor_layout.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/prepare/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/prepare/CMakeLists.txt...
Preprocessing /<<PKGBUILDDIR>>/src/prepare/compute_minimiser.cpp...
Parsing file /<<PKGBUILDDIR>>/src/prepare/compute_minimiser.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/raptor.cpp...
Parsing file /<<PKGBUILDDIR>>/src/raptor.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/search/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/search/CMakeLists.txt...
Preprocessing /<<PKGBUILDDIR>>/src/search/raptor_search.cpp...
Parsing file /<<PKGBUILDDIR>>/src/search/raptor_search.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/search/search_hibf.cpp...
Parsing file /<<PKGBUILDDIR>>/src/search/search_hibf.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/search/search_ibf.cpp...
Parsing file /<<PKGBUILDDIR>>/src/search/search_ibf.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/search/search_partitioned_ibf.cpp...
Parsing file /<<PKGBUILDDIR>>/src/search/search_partitioned_ibf.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/threshold/CMakeLists.txt...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/multiple_error_model.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/multiple_error_model.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/one_error_model.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/one_error_model.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/one_indirect_error_model.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/one_indirect_error_model.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/pascal_row.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/pascal_row.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/precompute_correction.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/precompute_correction.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/threshold/precompute_threshold.cpp...
Parsing file /<<PKGBUILDDIR>>/src/threshold/precompute_threshold.cpp...
Preprocessing /<<PKGBUILDDIR>>/src/upgrade/CMakeLists.txt...
Parsing file /<<PKGBUILDDIR>>/src/upgrade/CMakeLists.txt...
Preprocessing /<<PKGBUILDDIR>>/src/upgrade/raptor_upgrade.cpp...
Parsing file /<<PKGBUILDDIR>>/src/upgrade/raptor_upgrade.cpp...
Reading /<<PKGBUILDDIR>>/doc/figures/hibf.svg...
Reading /<<PKGBUILDDIR>>/doc/figures/ibf.svg...
Reading /<<PKGBUILDDIR>>/doc/figures/Raptor_no_title.svg...
Reading /<<PKGBUILDDIR>>/doc/setup/quickstart_cmake/index.md...
Reading /<<PKGBUILDDIR>>/doc/tutorial/01_introduction/index.md...
Reading /<<PKGBUILDDIR>>/doc/tutorial/02_layout/index.md...
Reading /<<PKGBUILDDIR>>/doc/tutorial/03_index/index.md...
Reading /<<PKGBUILDDIR>>/doc/tutorial/04_search/index.md...
Reading /<<PKGBUILDDIR>>/LICENSE.md...
Reading /<<PKGBUILDDIR>>/CHANGELOG.md...
Building macro definition list...
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Building file list...
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Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
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Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
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Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
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Generating example documentation...
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Generating code for file loop_over_children.hpp...
Generating code for file node_data.hpp...
Generating code for file parse_chopper_pack_header.hpp...
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Generating code for file read_chopper_pack_file.hpp...
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Generating code for file dna4_traits.hpp...
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Generating code for file logspace.hpp...
Generating code for file multiple_error_model.hpp...
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Generating code for file one_indirect_error_model.hpp...
Generating code for file pascal_row.hpp...
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Generating code for file version.hpp...
Parsing code for file LICENSE.md...
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Parsing code for file compute_bin_size.cpp...
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Parsing code for file parse_chopper_pack_header.cpp...
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Generating file documentation...
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finalizing index lists...
writing tag file...
Running plantuml with JAVA...
type lookup cache used 2392/65536 hits=11424 misses=2675
symbol lookup cache used 2956/65536 hits=16171 misses=2956
finished...
make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
[100%] Built target doc
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
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make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
cd doc_build/latex && /usr/bin/make
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc_build/latex'
rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf
pdflatex refman
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex)
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entering extended mode
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LaTeX2e <2023-11-01> patch level 1
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pdflatex refman
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex)
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      pdflatex refman ;\
      latex_count=`expr $latex_count - 1` ;\
    done
Package longtable Warning: Table widths have changed. Rerun LaTeX.
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LaTeX2e <2023-11-01> patch level 1
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This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support).
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pdflatex refman
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./refman.tex
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L3 programming layer <2024-01-22>

make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc_build/latex'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test --arch --builddirectory build_unit
	cd build_unit && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_unit'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/build_unit/DartConfiguration.tcl
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/build_unit/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/build_unit
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
      Start  1: api/issue_142

1: Test command: /<<PKGBUILDDIR>>/build_unit/api/issue_142
1: Working Directory: /<<PKGBUILDDIR>>/build_unit/api
1: Test timeout computed to be: 10000000
test 2
      Start  2: api/memory_usage

2: Test command: /<<PKGBUILDDIR>>/build_unit/api/memory_usage
2: Working Directory: /<<PKGBUILDDIR>>/build_unit/api
2: Test timeout computed to be: 10000000
test 3
      Start  3: api/validate_shape

3: Test command: /<<PKGBUILDDIR>>/build_unit/api/validate_shape
3: Working Directory: /<<PKGBUILDDIR>>/build_unit/api
3: Test timeout computed to be: 10000000
test 4
      Start  4: cli/argument_parsing/options_test

4: Test command: /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing/options_test
4: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/argument_parsing
4: Test timeout computed to be: 10000000
1: Running main() from ./googletest/src/gtest_main.cc
1: [==========] Running 1 test from 1 test suite.
1: [----------] Global test environment set-up.
1: [----------] 1 test from issue
1: [ RUN      ] issue.142
2: Running main() from ./googletest/src/gtest_main.cc
2: [==========] Running 8 tests from 1 test suite.
2: [----------] Global test environment set-up.
2: [----------] 8 tests from peak_ram
2: [ RUN      ] peak_ram.bytes
2: [       OK ] peak_ram.bytes (0 ms)
2: [ RUN      ] peak_ram.KiB
2: [       OK ] peak_ram.KiB (0 ms)
2: [ RUN      ] peak_ram.MiB
2: [       OK ] peak_ram.MiB (0 ms)
2: [ RUN      ] peak_ram.GiB
2: [       OK ] peak_ram.GiB (0 ms)
2: [ RUN      ] peak_ram.TiB
2: [       OK ] peak_ram.TiB (0 ms)
2: [ RUN      ] peak_ram.PiB
2: [       OK ] peak_ram.PiB (0 ms)
2: [ RUN      ] peak_ram.EiB
2: [       OK ] peak_ram.EiB (0 ms)
2: [ RUN      ] peak_ram.via_OS
2: [       OK ] peak_ram.via_OS (0 ms)
2: [----------] 8 tests from peak_ram (0 ms total)
2: 
2: [----------] Global test environment tear-down
2: [==========] 8 tests from 1 test suite ran. (0 ms total)
2: [  PASSED  ] 8 tests.
3: Running main() from ./googletest/src/gtest_main.cc
3: [==========] Running 1 test from 1 test suite.
3: [----------] Global test environment set-up.
3: [----------] 1 test from validate_shape
3: [ RUN      ] validate_shape.set_window_to_kmer
3: [       OK ] validate_shape.set_window_to_kmer (0 ms)
3: [----------] 1 test from validate_shape (0 ms total)
3: 
3: [----------] Global test environment tear-down
3: [==========] 1 test from 1 test suite ran. (0 ms total)
3: [  PASSED  ] 1 test.
 1/14 Test  #2: api/memory_usage ............................   Passed    0.00 sec
test 5
      Start  5: cli/build/build_hibf_chopper_test

5: Test command: /<<PKGBUILDDIR>>/build_unit/cli/build/build_hibf_chopper_test
5: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/build
5: Test timeout computed to be: 10000000
 2/14 Test  #3: api/validate_shape ..........................   Passed    0.00 sec
test 6
      Start  6: cli/build/build_hibf_test

6: Test command: /<<PKGBUILDDIR>>/build_unit/cli/build/build_hibf_test
6: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/build
6: Test timeout computed to be: 10000000
1: [       OK ] issue.142 (4 ms)
1: [----------] 1 test from issue (4 ms total)
1: 
1: [----------] Global test environment tear-down
1: [==========] 1 test from 1 test suite ran. (4 ms total)
1: [  PASSED  ] 1 test.
 3/14 Test  #1: api/issue_142 ...............................   Passed    0.01 sec
test 7
      Start  7: cli/build/build_ibf_compressed_test

7: Test command: /<<PKGBUILDDIR>>/build_unit/cli/build/build_ibf_compressed_test
7: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/build
7: Test timeout computed to be: 10000000
4: Running main() from ./googletest/src/gtest_main.cc
4: [==========] Running 41 tests from 5 test suites.
4: [----------] Global test environment set-up.
4: [----------] 3 tests from argparse_main
4: [ RUN      ] argparse_main.no_options
4: [       OK ] argparse_main.no_options (3 ms)
4: [ RUN      ] argparse_main.no_subparser
5: Running main() from ./googletest/src/gtest_main.cc
5: [==========] Running 1 test from 1 test suite.
5: [----------] Global test environment set-up.
5: [----------] 1 test from build_hibf_layout
5: [ RUN      ] build_hibf_layout.pipeline
6: Running main() from ./googletest/src/gtest_main.cc
6: [==========] Running 26 tests from 2 test suites.
6: [----------] Global test environment set-up.
6: [----------] 2 tests from build_hibf
6: [ RUN      ] build_hibf.three_levels
7: Running main() from ./googletest/src/gtest_main.cc
7: [==========] Running 25 tests from 2 test suites.
7: [----------] Global test environment set-up.
7: [----------] 1 test from build_ibf_compressed
7: [ RUN      ] build_ibf_compressed.wrong_compression
7: [       OK ] build_ibf_compressed.wrong_compression (0 ms)
7: [----------] 1 test from build_ibf_compressed (0 ms total)
7: 
7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error
4: [       OK ] argparse_main.no_subparser (4 ms)
4: [ RUN      ] argparse_main.unknown_option
4: [       OK ] argparse_main.unknown_option (3 ms)
4: [----------] 3 tests from argparse_main (10 ms total)
4: 
4: [----------] 20 tests from argparse_build
4: [ RUN      ] argparse_build.no_options
4: [       OK ] argparse_build.no_options (4 ms)
4: [ RUN      ] argparse_build.input_missing
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (11 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error
4: [       OK ] argparse_build.input_missing (2 ms)
4: [ RUN      ] argparse_build.input_invalid
6: [       OK ] build_hibf.three_levels (20 ms)
6: [ RUN      ] build_hibf.verbose
4: [       OK ] argparse_build.input_invalid (5 ms)
4: [ RUN      ] argparse_build.output_missing
4: [       OK ] argparse_build.output_missing (3 ms)
4: [ RUN      ] argparse_build.kmer_window
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (12 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error
4: [       OK ] argparse_build.kmer_window (3 ms)
4: [ RUN      ] argparse_build.kmer_shape
4: [       OK ] argparse_build.kmer_shape (4 ms)
4: [ RUN      ] argparse_build.zero_threads
4: [       OK ] argparse_build.zero_threads (2 ms)
4: [ RUN      ] argparse_build.no_bins_in_file
5: [       OK ] build_hibf_layout.pipeline (37 ms)
5: [----------] 1 test from build_hibf_layout (37 ms total)
5: 
5: [----------] Global test environment tear-down
5: [==========] 1 test from 1 test suite ran. (37 ms total)
5: [  PASSED  ] 1 test.
 4/14 Test  #5: cli/build/build_hibf_chopper_test ...........   Passed    0.04 sec
test 8
      Start  8: cli/build/build_ibf_partitioned_test

8: Test command: /<<PKGBUILDDIR>>/build_unit/cli/build/build_ibf_partitioned_test
8: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/build
8: Test timeout computed to be: 10000000
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (11 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error
8: Running main() from ./googletest/src/gtest_main.cc
8: [==========] Running 25 tests from 2 test suites.
8: [----------] Global test environment set-up.
8: [----------] 1 test from build_ibf_partitioned
8: [ RUN      ] build_ibf_partitioned.pipeline_misc
4: [       OK ] argparse_build.no_bins_in_file (3 ms)
4: [ RUN      ] argparse_build.corrupted_input
4: [       OK ] argparse_build.corrupted_input (2 ms)
4: [ RUN      ] argparse_build.empty_file_in_bin
6: [       OK ] build_hibf.verbose (21 ms)
6: [----------] 2 tests from build_hibf (42 ms total)
6: 
6: [----------] 24 tests from build_hibf_suite/build_hibf
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel
6: [       OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (3 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial
4: [       OK ] argparse_build.empty_file_in_bin (6 ms)
4: [ RUN      ] argparse_build.mixed_input
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (10 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error
4: [       OK ] argparse_build.mixed_input (2 ms)
4: [ RUN      ] argparse_build.wrong_parts
6: [       OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (3 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel
4: [       OK ] argparse_build.wrong_parts (2 ms)
4: [ RUN      ] argparse_build.partitioned_parts
6: [       OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (3 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial
6: [       OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (2 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel
4: [       OK ] argparse_build.partitioned_parts (4 ms)
4: [ RUN      ] argparse_build.minimiser_and_shape
4: [       OK ] argparse_build.minimiser_and_shape (2 ms)
4: [ RUN      ] argparse_build.minimiser_and_kmer
6: [       OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (6 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial
6: [       OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (5 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel
4: [       OK ] argparse_build.minimiser_and_kmer (10 ms)
4: [ RUN      ] argparse_build.minimiser_and_window
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (26 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error
4: [       OK ] argparse_build.minimiser_and_window (5 ms)
4: [ RUN      ] argparse_build.layout_config_and_options
6: [       OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (9 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial
8: [       OK ] build_ibf_partitioned.pipeline_misc (45 ms)
8: [----------] 1 test from build_ibf_partitioned (45 ms total)
8: 
8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed
6: [       OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (6 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel
4: [       OK ] argparse_build.layout_config_and_options (8 ms)
4: [ RUN      ] argparse_build.layout_too_small_window
4: [       OK ] argparse_build.layout_too_small_window (2 ms)
4: [ RUN      ] argparse_build.layout_config_missing
4: [       OK ] argparse_build.layout_config_missing (5 ms)
4: [ RUN      ] argparse_build.layout_config_missing_preprocessed
6: [       OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (13 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial
4: [       OK ] argparse_build.layout_config_missing_preprocessed (6 ms)
4: [----------] 20 tests from argparse_build (91 ms total)
4: 
4: [----------] 13 tests from argparse_search
4: [ RUN      ] argparse_search.no_options
4: [       OK ] argparse_search.no_options (2 ms)
4: [ RUN      ] argparse_search.ibf_missing
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (28 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error
4: [       OK ] argparse_search.ibf_missing (2 ms)
4: [ RUN      ] argparse_search.ibf_wrong
4: [       OK ] argparse_search.ibf_wrong (2 ms)
4: [ RUN      ] argparse_search.query_missing
4: [       OK ] argparse_search.query_missing (4 ms)
4: [ RUN      ] argparse_search.query_wrong
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (29 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed
6: [       OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (16 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel
4: [       OK ] argparse_search.query_wrong (3 ms)
4: [ RUN      ] argparse_search.output_missing
6: [       OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (9 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial
4: [       OK ] argparse_search.output_missing (10 ms)
4: [ RUN      ] argparse_search.old_index
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (28 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error
6: [       OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (12 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel
4: [       OK ] argparse_search.old_index (11 ms)
4: [ RUN      ] argparse_search.ambiguous_index
4: [       OK ] argparse_search.ambiguous_index (2 ms)
4: [ RUN      ] argparse_search.error_treshold
6: [       OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (3 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (27 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed
4: [       OK ] argparse_search.error_treshold (2 ms)
4: [ RUN      ] argparse_search.empty_query
6: [       OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (2 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel
6: [       OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (2 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial
4: [       OK ] argparse_search.empty_query (4 ms)
4: [ RUN      ] argparse_search.queries_too_short
6: [       OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (2 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel
4: [       OK ] argparse_search.queries_too_short (3 ms)
4: [ RUN      ] argparse_search.queries_have_variance
6: [       OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (6 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (28 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error
6: [       OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (8 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel
4: [       OK ] argparse_search.queries_have_variance (22 ms)
4: [ RUN      ] argparse_search.queries_unsupported_length
6: [       OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (10 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial
4: [       OK ] argparse_search.queries_unsupported_length (5 ms)
4: [----------] 13 tests from argparse_search (79 ms total)
4: 
4: [----------] 3 tests from argparse_upgrade
4: [ RUN      ] argparse_upgrade.exclusive_options
6: [       OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (6 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (21 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (40 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed
4: [       OK ] argparse_upgrade.exclusive_options (3 ms)
4: [ RUN      ] argparse_upgrade.ambiguous_index
4: [       OK ] argparse_upgrade.ambiguous_index (5 ms)
4: [ RUN      ] argparse_upgrade.unsupported_index
6: [       OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (13 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (15 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error
4: [       OK ] argparse_upgrade.unsupported_index (9 ms)
4: [----------] 3 tests from argparse_upgrade (17 ms total)
4: 
4: [----------] 2 tests from argparse_prepare
4: [ RUN      ] argparse_prepare.no_options
4: [       OK ] argparse_prepare.no_options (4 ms)
4: [ RUN      ] argparse_prepare.cutoffs
4: [       OK ] argparse_prepare.cutoffs (3 ms)
4: [----------] 2 tests from argparse_prepare (7 ms total)
4: 
4: [----------] Global test environment tear-down
4: [==========] 41 tests from 5 test suites ran. (207 ms total)
4: [  PASSED  ] 41 tests.
 5/14 Test  #4: cli/argument_parsing/options_test ...........   Passed    0.21 sec
test 9
      Start  9: cli/build/build_ibf_test

9: Test command: /<<PKGBUILDDIR>>/build_unit/cli/build/build_ibf_test
9: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/build
9: Test timeout computed to be: 10000000
9: Running main() from ./googletest/src/gtest_main.cc
9: [==========] Running 25 tests from 2 test suites.
9: [----------] Global test environment set-up.
9: [----------] 1 test from build_ibf
9: [ RUN      ] build_ibf.verbose
6: [       OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (19 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (18 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error
9: [       OK ] build_ibf.verbose (8 ms)
9: [----------] 1 test from build_ibf (9 ms total)
9: 
9: [----------] 24 tests from build_ibf_suite/build_ibf
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel
9: [       OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (6 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial
6: [       OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (10 ms)
6: [ RUN      ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (42 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed
9: [       OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (7 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (16 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error
6: [       OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (11 ms)
6: [----------] 24 tests from build_hibf_suite/build_hibf (193 ms total)
6: 
6: [----------] Global test environment tear-down
6: [==========] 26 tests from 2 test suites ran. (235 ms total)
6: [  PASSED  ] 26 tests.
 6/14 Test  #6: cli/build/build_hibf_test ...................   Passed    0.24 sec
test 10
      Start 10: cli/search/search_hibf_test

10: Test command: /<<PKGBUILDDIR>>/build_unit/cli/search/search_hibf_test
10: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/search
10: Test timeout computed to be: 10000000
10: Running main() from ./googletest/src/gtest_main.cc
10: [==========] Running 37 tests from 2 test suites.
10: [----------] Global test environment set-up.
10: [----------] 1 test from search_hibf
10: [ RUN      ] search_hibf.three_levels
9: [       OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (9 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial
10: [       OK ] search_hibf.three_levels (7 ms)
10: [----------] 1 test from search_hibf (7 ms total)
10: 
10: [----------] 36 tests from search_hibf_suite/search_hibf
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (10 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel
10: [       OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (17 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (31 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (12 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial
10: [       OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (6 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (8 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel
9: [       OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (8 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (57 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed
10: [       OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (20 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (12 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (32 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (14 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial
10: [       OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (29 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error
10: [       OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (21 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (39 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error
10: [       OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (11 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error
9: [       OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (15 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (66 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed
9: [       OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (12 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel
10: [       OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (25 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (13 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial
9: [       OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (4 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (44 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (4 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (31 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed
10: [       OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (22 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (4 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel
10: [       OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (10 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (12 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (20 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error
10: [       OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (7 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (25 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed
9: [       OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (11 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel
9: [       OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (7 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (23 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error
10: [       OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (23 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (9 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel
9: [       OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (12 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (19 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (38 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed
10: [       OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (28 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (15 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (8 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (9 ms)
9: [ RUN      ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (25 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error
9: [       OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (17 ms)
9: [----------] 24 tests from build_ibf_suite/build_ibf (264 ms total)
9: 
9: [----------] Global test environment tear-down
9: [==========] 25 tests from 2 test suites ran. (274 ms total)
9: [  PASSED  ] 25 tests.
 7/14 Test  #9: cli/build/build_ibf_test ....................   Passed    0.28 sec
test 11
      Start 11: cli/search/search_hibf_preprocessing_test

11: Test command: /<<PKGBUILDDIR>>/build_unit/cli/search/search_hibf_preprocessing_test
11: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/search
11: Test timeout computed to be: 10000000
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (10 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (39 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed
11: Running main() from ./googletest/src/gtest_main.cc
11: [==========] Running 49 tests from 2 test suites.
11: [----------] Global test environment set-up.
11: [----------] 1 test from search_hibf_preprocessing
11: [ RUN      ] search_hibf_preprocessing.pipeline_with_continuation
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (9 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (13 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (43 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (6 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (6 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error
11: [       OK ] search_hibf_preprocessing.pipeline_with_continuation (41 ms)
11: [----------] 1 test from search_hibf_preprocessing (41 ms total)
11: 
11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (8 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (10 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (12 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (58 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (34 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error
10: [       OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (11 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (4 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (18 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (24 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (15 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (39 ms)
7: [ RUN      ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (60 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed
10: [       OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (25 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (29 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (5 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (6 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error
7: [       OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (50 ms)
7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed (634 ms total)
7: 
7: [----------] Global test environment tear-down
7: [==========] 25 tests from 2 test suites ran. (634 ms total)
7: [  PASSED  ] 25 tests.
 8/14 Test  #7: cli/build/build_ibf_compressed_test .........   Passed    0.64 sec
test 12
      Start 12: cli/search/search_ibf_preprocessing_test

12: Test command: /<<PKGBUILDDIR>>/build_unit/cli/search/search_ibf_preprocessing_test
12: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/search
12: Test timeout computed to be: 10000000
12: Running main() from ./googletest/src/gtest_main.cc
12: [==========] Running 49 tests from 2 test suites.
12: [----------] Global test environment set-up.
12: [----------] 1 test from search_ibf_preprocessing
12: [ RUN      ] search_ibf_preprocessing.pipeline_compressed_index
10: [       OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (24 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (38 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (49 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed
12: [       OK ] search_ibf_preprocessing.pipeline_compressed_index (14 ms)
12: [----------] 1 test from search_ibf_preprocessing (14 ms total)
12: 
12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (22 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (14 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (9 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (32 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (8 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (20 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (53 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed
10: [       OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (25 ms)
10: [ RUN      ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (22 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (32 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (16 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (16 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error
10: [       OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (23 ms)
10: [----------] 36 tests from search_hibf_suite/search_hibf (490 ms total)
10: 
10: [----------] Global test environment tear-down
10: [==========] 37 tests from 2 test suites ran. (498 ms total)
10: [  PASSED  ] 37 tests.
 9/14 Test #10: cli/search/search_hibf_test .................   Passed    0.50 sec
test 13
      Start 13: cli/search/search_ibf_test

13: Test command: /<<PKGBUILDDIR>>/build_unit/cli/search/search_ibf_test
13: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/search
13: Test timeout computed to be: 10000000
13: Running main() from ./googletest/src/gtest_main.cc
13: [==========] Running 38 tests from 2 test suites.
13: [----------] Global test environment set-up.
13: [----------] 2 tests from search_ibf
13: [ RUN      ] search_ibf.cache_thresholds
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (20 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (30 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (56 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed
13: [       OK ] search_ibf.cache_thresholds (33 ms)
13: [ RUN      ] search_ibf.verbose
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (17 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error
13: [       OK ] search_ibf.verbose (16 ms)
13: [----------] 2 tests from search_ibf (49 ms total)
13: 
13: [----------] 36 tests from search_ibf_suite/search_ibf
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (16 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (30 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (7 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (9 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (56 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (32 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (33 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (33 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (32 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (38 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (24 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (3 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (16 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (32 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (23 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (23 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (84 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed
13: [       OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (22 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (26 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (5 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (33 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (8 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (22 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (28 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (27 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (35 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (79 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed
13: [       OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (30 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (45 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (7 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (5 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (12 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (33 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (10 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (49 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed
13: [       OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (5 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (43 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (27 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (7 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (8 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (8 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (30 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (7 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (44 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (38 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error
13: [       OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (8 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (8 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (9 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (36 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (22 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (41 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (22 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (54 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed
13: [       OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (23 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (25 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (39 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (20 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (27 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (53 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (39 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (27 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (26 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (11 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (6 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (22 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (33 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (11 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (37 ms)
13: [ RUN      ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (19 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (84 ms)
8: [ RUN      ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (35 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error
13: [       OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (36 ms)
13: [----------] 36 tests from search_ibf_suite/search_ibf (509 ms total)
13: 
13: [----------] Global test environment tear-down
13: [==========] 38 tests from 2 test suites ran. (559 ms total)
13: [  PASSED  ] 38 tests.
10/14 Test #13: cli/search/search_ibf_test ..................   Passed    0.56 sec
test 14
      Start 14: cli/upgrade/upgrade_test

14: Test command: /<<PKGBUILDDIR>>/build_unit/cli/upgrade/upgrade_test
14: Working Directory: /<<PKGBUILDDIR>>/build_unit/cli/upgrade
14: Test timeout computed to be: 10000000
14: Running main() from ./googletest/src/gtest_main.cc
14: [==========] Running 6 tests from 1 test suite.
14: [----------] Global test environment set-up.
14: [----------] 6 tests from upgrade
14: [ RUN      ] upgrade.via_fpr
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (31 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error
14: [       OK ] upgrade.via_fpr (3 ms)
14: [ RUN      ] upgrade.via_bin_path
14: [       OK ] upgrade.via_bin_path (8 ms)
14: [ RUN      ] upgrade.via_bin_file
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (35 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error
14: [       OK ] upgrade.via_bin_file (5 ms)
14: [ RUN      ] upgrade.compressed
14: [       OK ] upgrade.compressed (2 ms)
14: [ RUN      ] upgrade.partitioned_ibf_via_fpr
14: [       OK ] upgrade.partitioned_ibf_via_fpr (5 ms)
14: [ RUN      ] upgrade.partitioned_ibf_via_bin_path
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (41 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error
14: [       OK ] upgrade.partitioned_ibf_via_bin_path (16 ms)
14: [----------] 6 tests from upgrade (42 ms total)
14: 
14: [----------] Global test environment tear-down
14: [==========] 6 tests from 1 test suite ran. (42 ms total)
14: [  PASSED  ] 6 tests.
11/14 Test #14: cli/upgrade/upgrade_test ....................   Passed    0.04 sec
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (36 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error
8: [       OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (90 ms)
8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (1278 ms total)
8: 
8: [----------] Global test environment tear-down
8: [==========] 25 tests from 2 test suites ran. (1323 ms total)
8: [  PASSED  ] 25 tests.
12/14 Test  #8: cli/build/build_ibf_partitioned_test ........   Passed    1.33 sec
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (14 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (29 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (9 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (9 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (11 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (25 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (12 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (11 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (29 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (14 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (18 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (33 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (36 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (37 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (26 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (31 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (21 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (31 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (18 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (20 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (36 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (17 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (24 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (24 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (45 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (33 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (33 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (31 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (39 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (36 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (39 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (36 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (23 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (25 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (39 ms)
11: [ RUN      ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (20 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (22 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error
11: [       OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (43 ms)
11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (1334 ms total)
11: 
11: [----------] Global test environment tear-down
11: [==========] 49 tests from 2 test suites ran. (1376 ms total)
11: [  PASSED  ] 49 tests.
13/14 Test #11: cli/search/search_hibf_preprocessing_test ...   Passed    1.38 sec
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (36 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (36 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (35 ms)
12: [ RUN      ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error
12: [       OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (41 ms)
12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (1345 ms total)
12: 
12: [----------] Global test environment tear-down
12: [==========] 49 tests from 2 test suites ran. (1361 ms total)
12: [  PASSED  ] 49 tests.
14/14 Test #12: cli/search/search_ibf_preprocessing_test ....   Passed    1.36 sec

100% tests passed, 0 tests failed out of 14

Total Test time (real) =   2.01 sec
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_unit'
#dh_auto_test --arch --builddirectory build_performance
#dh_auto_test --arch --builddirectory build_header
dh_auto_test --arch --builddirectory build_snippet
	cd build_snippet && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_snippet'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/build_snippet/DartConfiguration.tcl
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/build_snippet/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/build_snippet
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
    Start 1: snippet/hibf/bin_indices_of_ibf_snippet

1: Test command: /<<PKGBUILDDIR>>/build_snippet/hibf/bin_indices_of_ibf_snippet
1: Working Directory: /<<PKGBUILDDIR>>/build_snippet
1: Environment variables: 
1:  SHARG_NO_VERSION_CHECK=0
1: Test timeout computed to be: 10000000
test 2
    Start 2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output

2: Test command: /usr/bin/cmake "-DTARGET_FILE=/<<PKGBUILDDIR>>/build_snippet/hibf/bin_indices_of_ibf_snippet" "-DSOURCE_FILE=/<<PKGBUILDDIR>>/test/snippet/hibf/bin_indices_of_ibf.cpp" "-P" "/<<PKGBUILDDIR>>/test/snippet/compare_snippet_output.cmake"
2: Working Directory: /<<PKGBUILDDIR>>/build_snippet
2: Environment variables: 
2:  SHARG_NO_VERSION_CHECK=0
2: Test timeout computed to be: 10000000
test 3
    Start 3: snippet/hibf/filename_of_user_bin_snippet

3: Test command: /<<PKGBUILDDIR>>/build_snippet/hibf/filename_of_user_bin_snippet
3: Working Directory: /<<PKGBUILDDIR>>/build_snippet
3: Environment variables: 
3:  SHARG_NO_VERSION_CHECK=0
3: Test timeout computed to be: 10000000
test 4
    Start 4: snippet/hibf/filename_of_user_bin_snippet_cmp_output

4: Test command: /usr/bin/cmake "-DTARGET_FILE=/<<PKGBUILDDIR>>/build_snippet/hibf/filename_of_user_bin_snippet" "-DSOURCE_FILE=/<<PKGBUILDDIR>>/test/snippet/hibf/filename_of_user_bin.cpp" "-P" "/<<PKGBUILDDIR>>/test/snippet/compare_snippet_output.cmake"
4: Working Directory: /<<PKGBUILDDIR>>/build_snippet
4: Environment variables: 
4:  SHARG_NO_VERSION_CHECK=0
4: Test timeout computed to be: 10000000
1: User bin indices of 1-level-IBF: [1,2,3]
1: User bin indices of 2-level-IBF: [2,3]
2: -- TARGET_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/bin_indices_of_ibf_snippet
2: -- SOURCE_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/bin_indices_of_ibf.cpp
2: -- ACTUAL_OUTPUT_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/bin_indices_of_ibf_snippet.out
2: -- EXPECTED_OUTPUT_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/bin_indices_of_ibf.out
2: -- ACTUAL_ERROR_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/bin_indices_of_ibf_snippet.err
2: -- EXPECTED_ERROR_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/bin_indices_of_ibf.err
1/6 Test #1: snippet/hibf/bin_indices_of_ibf_snippet ................   Passed    0.01 sec
test 5
    Start 5: snippet/snippet_main_snippet

5: Test command: /<<PKGBUILDDIR>>/build_snippet/snippet_main_snippet
5: Working Directory: /<<PKGBUILDDIR>>/build_snippet
5: Environment variables: 
5:  SHARG_NO_VERSION_CHECK=0
5: Test timeout computed to be: 10000000
2: -- Output matches /<<PKGBUILDDIR>>/test/snippet/hibf/bin_indices_of_ibf.out
3: Filename of user bin 0: path/example1.fasta
3: Filename of user bin 1: path/example2.fasta
3: Filename of user bin 2: path/example2.fasta
2/6 Test #3: snippet/hibf/filename_of_user_bin_snippet ..............   Passed    0.01 sec
test 6
    Start 6: snippet/snippet_main_snippet_cmp_output

6: Test command: /usr/bin/cmake "-DTARGET_FILE=/<<PKGBUILDDIR>>/build_snippet/snippet_main_snippet" "-DSOURCE_FILE=/<<PKGBUILDDIR>>/test/snippet/snippet_main.cpp" "-P" "/<<PKGBUILDDIR>>/test/snippet/compare_snippet_output.cmake"
6: Working Directory: /<<PKGBUILDDIR>>/build_snippet
6: Environment variables: 
6:  SHARG_NO_VERSION_CHECK=0
6: Test timeout computed to be: 10000000
3/6 Test #5: snippet/snippet_main_snippet ...........................   Passed    0.00 sec
4: -- TARGET_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/filename_of_user_bin_snippet
4: -- SOURCE_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/filename_of_user_bin.cpp
4: -- ACTUAL_OUTPUT_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/filename_of_user_bin_snippet.out
4: -- EXPECTED_OUTPUT_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/filename_of_user_bin.out
4: -- ACTUAL_ERROR_FILE: /<<PKGBUILDDIR>>/build_snippet/hibf/filename_of_user_bin_snippet.err
4: -- EXPECTED_ERROR_FILE: /<<PKGBUILDDIR>>/test/snippet/hibf/filename_of_user_bin.err
6: -- TARGET_FILE: /<<PKGBUILDDIR>>/build_snippet/snippet_main_snippet
6: -- SOURCE_FILE: /<<PKGBUILDDIR>>/test/snippet/snippet_main.cpp
4: -- Output matches /<<PKGBUILDDIR>>/test/snippet/hibf/filename_of_user_bin.out
6: -- ACTUAL_OUTPUT_FILE: /<<PKGBUILDDIR>>/build_snippet/snippet_main_snippet.out
6: -- EXPECTED_OUTPUT_FILE: /<<PKGBUILDDIR>>/test/snippet/snippet_main.out
6: -- ACTUAL_ERROR_FILE: /<<PKGBUILDDIR>>/build_snippet/snippet_main_snippet.err
6: -- EXPECTED_ERROR_FILE: /<<PKGBUILDDIR>>/test/snippet/snippet_main.err
4/6 Test #2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output .....   Passed    0.02 sec
6: -- Output matches /<<PKGBUILDDIR>>/test/snippet/snippet_main.out
6: -- Output matches /<<PKGBUILDDIR>>/test/snippet/snippet_main.err
5/6 Test #6: snippet/snippet_main_snippet_cmp_output ................   Passed    0.01 sec
6/6 Test #4: snippet/hibf/filename_of_user_bin_snippet_cmp_output ...   Passed    0.02 sec

100% tests passed, 0 tests failed out of 6

Total Test time (real) =   0.03 sec
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_snippet'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test --builddirectory doc_build
	cd doc_build && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc_build'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/doc_build/DartConfiguration.tcl
UpdateCTestConfiguration  from :/<<PKGBUILDDIR>>/doc_build/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/doc_build
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
    Start 1: doc_no_warnings_test

1: Test command: /usr/bin/bash "-c" "
    /usr/bin/doxygen > doxygen.cout 2> doxygen.cerr;
    cat "doxygen.cerr";
    test ! -s "doxygen.cerr""
1: Working Directory: /<<PKGBUILDDIR>>/doc_build
1: Test timeout computed to be: 10000000
1/1 Test #1: doc_no_warnings_test .............   Passed    0.85 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) =   0.85 sec
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   debian/rules override_dh_auto_install-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --indep --builddir doc_build
	cd doc_build && make -j4 install DESTDIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc_build'
/usr/bin/cmake -S/<<PKGBUILDDIR>>/test/documentation -B/<<PKGBUILDDIR>>/doc_build --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc_build'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc_build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_install -Nseqan-raptor-doc
	cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<<BUILDDIR>>/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/raptor
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   debian/rules override_dh_missing
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_missing --list-missing
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_dwz -a
   dh_strip -a
795a2584cf7288f59318addd939da8fdc7e97c48
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
INFO: pkgstriptranslations version 154
INFO: pkgstriptranslations version 154
pkgstriptranslations: processing seqan-raptor-doc (in debian/seqan-raptor-doc); do_strip: , oemstrip: 
pkgstriptranslations: processing seqan-raptor (in debian/seqan-raptor); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/seqan-raptor-doc/DEBIAN/control, package seqan-raptor-doc, directory debian/seqan-raptor-doc
INFO: pkgstripfiles: waiting for lock (seqan-raptor-doc) ...
pkgstripfiles: processing control file: debian/seqan-raptor/DEBIAN/control, package seqan-raptor, directory debian/seqan-raptor
pkgstripfiles: Truncating usr/share/doc/seqan-raptor/changelog.Debian.gz to topmost ten records
pkgstripfiles: Running PNG optimization (using 4 cpus) for package seqan-raptor ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_3.0.1+ds-5_amd64.deb'.
pkgstripfiles: Truncating usr/share/doc/seqan-raptor-doc/changelog.Debian.gz to topmost ten records
pkgstripfiles: Disabled PNG optimization for -doc package seqan-raptor-doc (to save build time)
dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_3.0.1+ds-5_all.deb'.
 dpkg-genbuildinfo --build=binary -O../seqan-raptor_3.0.1+ds-5_amd64.buildinfo
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lcy02-amd64-064.buildd> -O../seqan-raptor_3.0.1+ds-5_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-05-05T21:06:15Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


seqan-raptor_3.0.1+ds-5_amd64.changes:
--------------------------------------

Format: 1.8
Date: Wed, 06 Sep 2023 15:04:40 +0200
Source: seqan-raptor
Binary: seqan-raptor seqan-raptor-doc
Built-For-Profiles: noudeb
Architecture: all amd64
Version: 3.0.1+ds-5
Distribution: noble
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lcy02-amd64-064.buildd>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 seqan-raptor - pre-filter for querying very large collections of nucleotide sequ
 seqan-raptor-doc - HTML & PDF documentation for seqan-raptor and its APIs
Changes:
 seqan-raptor (3.0.1+ds-5) unstable; urgency=medium
 .
   * d/tests/run-unit-test: also use -DRAPTOR_NATIVE_BUILD=OFF here
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Checksums-Sha256:
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Files:
 ddcbc8c78c3f9c950da4da96b17ac849 1226500 doc optional seqan-raptor-doc_3.0.1+ds-5_all.deb
 aaa6af41833efadcf0f8dac78878ec12 11360 science optional seqan-raptor_3.0.1+ds-5_amd64.buildinfo
 3e3f969c806f399419b6a02b9266d34f 711758 science optional seqan-raptor_3.0.1+ds-5_amd64.deb
/<<BUILDDIR>>/seqan-raptor_3.0.1+ds-5_amd64.changes.new could not be renamed to /<<BUILDDIR>>/seqan-raptor_3.0.1+ds-5_amd64.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: seqan-raptor
Binary: seqan-raptor seqan-raptor-doc
Architecture: all amd64
Version: 3.0.1+ds-5
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Checksums-Sha1:
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 df918008af38966c0a17ccb3fae3e70f54725c76 711758 seqan-raptor_3.0.1+ds-5_amd64.deb
Checksums-Sha256:
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Build-Origin: Ubuntu
Build-Architecture: amd64
Build-Date: Sun, 05 May 2024 21:06:15 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3ubuntu1),
 autopoint (= 0.21-14ubuntu2),
 autotools-dev (= 20220109.1),
 base-files (= 13ubuntu10),
 base-passwd (= 3.6.3build1),
 bash (= 5.2.21-2ubuntu4),
 binutils (= 2.42-4ubuntu2),
 binutils-common (= 2.42-4ubuntu2),
 binutils-x86-64-linux-gnu (= 2.42-4ubuntu2),
 bsdextrautils (= 2.39.3-9ubuntu6),
 bsdutils (= 1:2.39.3-9ubuntu6),
 build-essential (= 12.10ubuntu1),
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 cmake (= 3.28.3-1build7),
 cmake-data (= 3.28.3-1build7),
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 cpp-13-x86-64-linux-gnu (= 13.2.0-23ubuntu4),
 cpp-x86-64-linux-gnu (= 4:13.2.0-7ubuntu1),
 cppreference-doc-en-html (= 20170409-2),
 dash (= 0.5.12-6ubuntu5),
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 diffutils (= 1:3.10-1build1),
 doxygen (= 1.9.8+ds-2build5),
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 g++-13-x86-64-linux-gnu (= 13.2.0-23ubuntu4),
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 libmd0 (= 1.1.0-2build1),
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Environment:
 DEB_BUILD_OPTIONS="noautodbgsym parallel=4"
 DEB_BUILD_PROFILES="noudeb"
 LANG="C.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1694005480"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


seqan-raptor-doc_3.0.1+ds-5_all.deb
-----------------------------------

 new Debian package, version 2.0.
 size 1226500 bytes: control archive=14810 bytes.
     975 bytes,    21 lines      control
   56301 bytes,   601 lines      md5sums
 Package: seqan-raptor-doc
 Source: seqan-raptor
 Version: 3.0.1+ds-5
 Architecture: all
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 7171
 Section: doc
 Priority: optional
 Multi-Arch: foreign
 Homepage: https://github.com/seqan/raptor
 Description: HTML & PDF documentation for seqan-raptor and its APIs
  Raptor is a system for approximately searching many queries such as
  next-generation sequencing reads or transcripts in large collections of
  nucleotide sequences. Raptor uses winnowing minimizers to define a set of
  representative k-mers, an extension of the interleaved Bloom filters (IBFs) as
  a set membership data structure and probabilistic thresholding for minimizers.
  This approach allows compression and partitioning of the IBF to enable the
  effective use of secondary memory.
  .
  This package contains Raptor's docs (HTML & PDF).

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seqan-raptor_3.0.1+ds-5_amd64.deb
---------------------------------

 new Debian package, version 2.0.
 size 711758 bytes: control archive=1242 bytes.
    1063 bytes,    19 lines      control
    1057 bytes,    15 lines      md5sums
 Package: seqan-raptor
 Version: 3.0.1+ds-5
 Architecture: amd64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2077
 Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 13.1), libyaml-cpp0.8 (>= 0.7.0), zlib1g (>= 1:1.1.4)
 Suggests: cwl-runner
 Section: science
 Priority: optional
 Homepage: https://github.com/seqan/raptor
 Description: pre-filter for querying very large collections of nucleotide sequences
  Raptor is a system for approximately searching many queries such as
  next-generation sequencing reads or transcripts in large collections of
  nucleotide sequences. Raptor uses winnowing minimizers to define a set of
  representative k-mers, an extension of the interleaved Bloom filters (IBFs) as
  a set membership data structure and probabilistic thresholding for minimizers.
  This approach allows compression and partitioning of the IBF to enable the
  effective use of secondary memory.

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drwxr-xr-x root/root         0 2023-09-06 13:04 ./usr/bin/
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: binary
Build-Space: 3113696
Build-Time: 641
Distribution: noble
Host Architecture: amd64
Install-Time: 86
Job: seqan-raptor_3.0.1+ds-5.dsc
Machine Architecture: amd64
Package: seqan-raptor
Package-Time: 728
Source-Version: 3.0.1+ds-5
Space: 3113696
Status: successful
Version: 3.0.1+ds-5
--------------------------------------------------------------------------------
Finished at 2024-05-05T21:06:15Z
Build needed 00:12:08, 3113696k disk space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28265192
Scanning for processes to kill in build PACKAGEBUILD-28265192