https://launchpad.net/ubuntu/+archive/test-rebuild-20201216-hirsute-gcc11/+build/20656743 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-027 4.15.0-134-generic #138-Ubuntu SMP Fri Jan 15 10:52:18 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_194~476~ubuntu18.04.1 python3-lpbuildd_194~476~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Jan 14:38:23 ntpdate[1674]: adjust time server 10.211.37.1 offset 0.000786 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20656743 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 Starting target for build PACKAGEBUILD-20656743 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute main' 'deb http://ftpmaster.internal/ubuntu hirsute main universe' Overriding sources.list in build-PACKAGEBUILD-20656743 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 Adding trusted keys to build-PACKAGEBUILD-20656743 Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). OK Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 Updating target for build PACKAGEBUILD-20656743 Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute InRelease [17.6 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute InRelease [17.6 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main amd64 Packages [22.6 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu hirsute/main Translation-en [10.0 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 Packages [16.7 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main Translation-en [6856 B] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main amd64 Packages [32.4 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu hirsute/main Translation-en [11.0 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1394 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [513 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [13.0 MB] Get:14 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5422 kB] Fetched 20.7 MB in 15s (1430 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-11-base libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages have been kept back: cpp g++ gcc The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd patch perl perl-base readline-common sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 115 upgraded, 5 newly installed, 0 to remove and 3 not upgraded. Need to get 88.8 MB of archives. After this operation, 51.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt-dev amd64 1:4.4.17-1ubuntu1 [105 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 gcc-11-base amd64 11-20210123-1ubuntu1 [19.0 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libgcc-s1 amd64 11-20210123-1ubuntu1 [42.2 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 libc6-dev amd64 2.32-0ubuntu6 [2131 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libstdc++6 amd64 11-20210123-1ubuntu1 [583 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libgomp1 amd64 11-20210123-1ubuntu1 [106 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libitm1 amd64 11-20210123-1ubuntu1 [26.4 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 libc-dev-bin amd64 2.32-0ubuntu6 [30.9 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt1 amd64 1:4.4.17-1ubuntu1 [78.8 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 linux-libc-dev amd64 5.8.0-36.40+21.04.1 [1138 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libatomic1 amd64 11-20210123-1ubuntu1 [9232 B] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libasan6 amd64 11-20210123-1ubuntu1 [2040 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-common all 1.3.1-1 [7452 B] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 libk5crypto3 amd64 1.17-10ubuntu1 [79.2 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgssapi-krb5-2 amd64 1.17-10ubuntu1 [121 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-3 amd64 1.17-10ubuntu1 [332 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5support0 amd64 1.17-10ubuntu1 [30.7 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 libssl1.1 amd64 1.1.1f-1ubuntu5 [1324 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-dev amd64 1.3.1-1 [183 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc3 amd64 1.3.1-1 [76.9 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 libc6 amd64 2.32-0ubuntu6 [2683 kB] Get:22 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 liblsan0 amd64 11-20210123-1ubuntu1 [883 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-files amd64 11ubuntu16 [60.5 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 bash amd64 5.1-1ubuntu1 [673 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdutils amd64 1:2.36.1-1ubuntu2 [86.8 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 coreutils amd64 8.32-4ubuntu2 [1353 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main amd64 tar amd64 1.32+dfsg-1 [279 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg amd64 1.20.7.1ubuntu1 [1257 kB] Get:29 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libtsan0 amd64 11-20210123-1ubuntu1 [2011 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main amd64 dash amd64 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 [87.1 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 grep amd64 3.6-1 [155 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 gzip amd64 1.10-2ubuntu2 [95.6 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 login amd64 1:4.8.1-1ubuntu8 [220 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncursesw6 amd64 6.2+20201114-2 [132 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtinfo6 amd64 6.2+20201114-2 [87.3 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-bin amd64 6.2+20201114-2 [173 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:39 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libubsan1 amd64 11-20210123-1ubuntu1 [838 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libperl5.32 amd64 5.32.0-6 [4064 kB] Get:41 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libquadmath0 amd64 11-20210123-1ubuntu1 [146 kB] Get:42 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu hirsute/main amd64 libcc1-0 amd64 11-20210123-1ubuntu1 [48.8 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl amd64 5.32.0-6 [225 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl-base amd64 5.32.0-6 [1562 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgdbm6 amd64 1.19-2 [27.5 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgdbm-compat4 amd64 1.19-2 [6236 B] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 util-linux amd64 2.36.1-1ubuntu2 [1073 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebconfclient0 amd64 0.256ubuntu1 [6220 B] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-passwd amd64 3.5.48 [47.5 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 init-system-helpers all 1.59 [38.2 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 libc-bin amd64 2.32-0ubuntu6 [642 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-base all 6.2+20201114-2 [18.4 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 sysvinit-utils amd64 2.96-5ubuntu1 [20.8 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxxhash0 amd64 0.8.0-2 [25.3 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcrypt20 amd64 1.8.7-2ubuntu1 [424 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblz4-1 amd64 1.9.3-0ubuntu1 [56.0 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main amd64 systemd-sysv amd64 247.1-4ubuntu1 [10.3 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap-ng0 amd64 0.7.9-2.2build1 [11.0 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit1 amd64 1:2.8.5-3ubuntu3 [39.0 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-8-0 amd64 10.35-2ubuntu1 [204 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main amd64 libselinux1 amd64 3.1-2build2 [69.4 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage-common all 3.1-1build2 [10.0 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage1 amd64 3.1-1build2 [86.9 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main amd64 passwd amd64 1:4.8.1-1ubuntu8 [798 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main amd64 adduser all 3.118ubuntu5 [156 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 systemd-timesyncd amd64 247.1-4ubuntu1 [28.1 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapparmor1 amd64 3.0.0-0ubuntu5 [35.5 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblkid1 amd64 2.36.1-1ubuntu2 [132 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 libudev1 amd64 247.1-4ubuntu1 [69.1 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu4 [128 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuuid1 amd64 2.36.1-1ubuntu2 [21.6 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcryptsetup12 amd64 2:2.3.4-1ubuntu1 [195 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 libidn2-0 amd64 2.3.0-5 [52.2 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 libp11-kit0 amd64 0.23.22-1 [191 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgnutls30 amd64 3.7.0-5ubuntu1 [918 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main amd64 libip4tc2 amd64 1.8.5-3ubuntu4 [18.7 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main amd64 libseccomp2 amd64 2.4.3-1ubuntu6 [41.9 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 mount amd64 2.36.1-1ubuntu2 [121 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 systemd amd64 247.1-4ubuntu1 [3988 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsystemd0 amd64 247.1-4ubuntu1 [276 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main amd64 libzstd1 amd64 1.4.8+dfsg-1 [304 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapt-pkg6.0 amd64 2.1.18 [900 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpgv amd64 2.2.20-1ubuntu2 [202 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 apt amd64 2.1.18 [1327 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main amd64 init amd64 1.59 [6164 B] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 libacl1 amd64 2.2.53-9 [17.6 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main amd64 libattr1 amd64 1:2.4.48-6 [12.9 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmount1 amd64 2.36.1-1ubuntu2 [147 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsmartcols1 amd64 2.36.1-1ubuntu2 [94.6 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main amd64 g++-10 amd64 10.2.1-6ubuntu1 [9763 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10 amd64 10.2.1-6ubuntu1 [17.4 MB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main amd64 libstdc++-10-dev amd64 10.2.1-6ubuntu1 [1754 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcc-10-dev amd64 10.2.1-6ubuntu1 [2345 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main amd64 libisl23 amd64 0.23-1 [652 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmpc3 amd64 1.2.0-1 [44.3 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main amd64 libctf0 amd64 2.35.50.20210106-1ubuntu2 [95.1 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main amd64 libctf-nobfd0 amd64 2.35.50.20210106-1ubuntu2 [97.1 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils-x86-64-linux-gnu amd64 2.35.50.20210106-1ubuntu2 [1838 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbinutils amd64 2.35.50.20210106-1ubuntu2 [584 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils amd64 2.35.50.20210106-1ubuntu2 [3396 B] Get:102 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils-common amd64 2.35.50.20210106-1ubuntu2 [216 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main amd64 cpp-10 amd64 10.2.1-6ubuntu1 [8579 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10-base amd64 10.2.1-6ubuntu1 [19.7 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main amd64 sensible-utils all 0.0.14 [13.5 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap2 amd64 1:2.44-1 [17.2 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main amd64 readline-common all 8.1-1 [54.1 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main amd64 libreadline8 amd64 8.1-1 [137 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsqlite3-0 amd64 3.34.0-1 [589 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main amd64 openssl amd64 1.1.1f-1ubuntu5 [621 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main amd64 tzdata all 2020f-1ubuntu2 [294 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg-dev all 1.20.7.1ubuntu1 [934 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdpkg-perl all 1.20.7.1ubuntu1 [232 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main amd64 patch amd64 2.7.6-7 [105 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfakeroot amd64 1.25.3-1.1 [26.8 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main amd64 fakeroot amd64 1.25.3-1.1 [62.9 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnpth0 amd64 1.6-3 [8220 B] Get:118 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpg amd64 2.2.20-1ubuntu2 [488 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpgconf amd64 2.2.20-1ubuntu2 [125 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpg-agent amd64 2.2.20-1ubuntu2 [233 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.8 MB in 5s (18.9 MB/s) (Reading database ... 12980 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 26 14:40:20 UTC 2021. Universal Time is now: Tue Jan 26 14:40:20 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up gcc-10-base:amd64 (10.2.1-6ubuntu1) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libquadmath0:amd64 (11-20210123-1ubuntu1) ... Setting up libmpc3:amd64 (1.2.0-1) ... Setting up libatomic1:amd64 (11-20210123-1ubuntu1) ... Setting up patch (2.7.6-7) ... Setting up libncursesw6:amd64 (6.2+20201114-2) ... Setting up libk5crypto3:amd64 (1.17-10ubuntu1) ... Setting up libubsan1:amd64 (11-20210123-1ubuntu1) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:amd64 (1.17-10ubuntu1) ... Setting up libbinutils:amd64 (2.35.50.20210106-1ubuntu2) ... Setting up libisl23:amd64 (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:amd64 (11-20210123-1ubuntu1) ... Setting up liblsan0:amd64 (11-20210123-1ubuntu1) ... Setting up cpp-10 (10.2.1-6ubuntu1) ... Setting up libitm1:amd64 (11-20210123-1ubuntu1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libtsan0:amd64 (11-20210123-1ubuntu1) ... Setting up libctf0:amd64 (2.35.50.20210106-1ubuntu2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6ubuntu1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-10ubuntu1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.0-6) ... Setting up gpgconf (2.2.20-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu2) ... Setting up binutils-x86-64-linux-gnu (2.35.50.20210106-1ubuntu2) ... Setting up libtirpc3:amd64 (1.3.1-1) ... Setting up gpg-agent (2.2.20-1ubuntu2) ... Setting up binutils (2.35.50.20210106-1ubuntu2) ... Setting up perl (5.32.0-6) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up gcc-10 (10.2.1-6ubuntu1) ... Setting up libdpkg-perl (1.20.7.1ubuntu1) ... Setting up libc6-dev:amd64 (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6ubuntu1) ... Setting up g++-10 (10.2.1-6ubuntu1) ... Setting up dpkg-dev (1.20.7.1ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20656743 amd64 hirsute -c chroot:build-PACKAGEBUILD-20656743 --arch=amd64 --dist=hirsute --nolog -A murasaki_1.68.6-10build1.dsc Initiating build PACKAGEBUILD-20656743 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-134-generic #138-Ubuntu SMP Fri Jan 15 10:52:18 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-027.buildd +==============================================================================+ | murasaki 1.68.6-10build1 (amd64) Tue, 26 Jan 2021 14:40:23 +0000 | +==============================================================================+ Package: murasaki Version: 1.68.6-10build1 Source Version: 1.68.6-10build1 Distribution: hirsute Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20656743/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- murasaki_1.68.6-10build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/murasaki-cEW8Ds/murasaki-1.68.6' with '<>' I: NOTICE: Log filtering will replace 'build/murasaki-cEW8Ds' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-R1BFEi/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-R1BFEi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-R1BFEi/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-R1BFEi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-R1BFEi/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-R1BFEi/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (48.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-R1BFEi/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14982 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev Filtered Build-Depends: debhelper-compat (= 13), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-murasaki-dummy' in '/<>/resolver-R1BFEi/apt_archive/sbuild-build-depends-murasaki-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-murasaki-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-R1BFEi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-R1BFEi/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-R1BFEi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-R1BFEi/apt_archive ./ Sources [564 B] Get:5 copy:/<>/resolver-R1BFEi/apt_archive ./ Packages [648 B] Fetched 2175 B in 0s (36.2 kB/s) Reading package lists... Reading package lists... Install murasaki build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cpp-9 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libasan5 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbsd0 libcbor0.6 libcrypto++-dev libcrypto++8 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu67 libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsm-infinipath1 libpsm2-2 libpstreams-dev librdmacm1 libsigsegv2 libsub-override-perl libterm-readkey-perl libtext-wrapper-perl libtool libuchardet0 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc gcc-9-locales dh-make gcc-9-multilib gcc-9-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cpp-9 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libasan5 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbsd0 libcbor0.6 libcrypto++-dev libcrypto++8 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu67 libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsm-infinipath1 libpsm2-2 libpstreams-dev librdmacm1 libsigsegv2 libsub-override-perl libterm-readkey-perl libtext-wrapper-perl libtool libuchardet0 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-murasaki-dummy zlib1g-dev 0 upgraded, 106 newly installed, 0 to remove and 3 not upgraded. Need to get 79.5 MB of archives. After this operation, 462 MB of additional disk space will be used. 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Setting up libx11-6:amd64 (2:1.7.0-2) ... Setting up libboost-regex-dev:amd64 (1.74.0.3ubuntu2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (33.0-1) ... Setting up ibverbs-providers:amd64 (33.0-1) ... Setting up openssh-client (1:8.4p1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libxnvctrl0:amd64 (440.82-0ubuntu1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-3ubuntu2) ... Setting up libgcc-9-dev:amd64 (9.3.0-19ubuntu2) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-15) ... Setting up libhwloc-dev:amd64 (2.4.0+dfsg-3) ... 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Setting up openmpi-bin (4.0.5-7ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.5-7ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up debhelper (13.3.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-murasaki-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-134-generic amd64 (x86_64) Toolchain package versions: binutils_2.35.50.20210106-1ubuntu2 dpkg-dev_1.20.7.1ubuntu1 g++-10_10.2.1-6ubuntu1 gcc-10_10.2.1-6ubuntu1 gcc-9_9.3.0-19ubuntu2 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-6ubuntu1 libstdc++6_11-20210123-1ubuntu1 linux-libc-dev_5.8.0-36.40+21.04.1 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20210106-1ubuntu2 binutils-common_2.35.50.20210106-1ubuntu2 binutils-x86-64-linux-gnu_2.35.50.20210106-1ubuntu2 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-6ubuntu1 cpp-9_9.3.0-19ubuntu2 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.7.1ubuntu1 dpkg-dev_1.20.7.1ubuntu1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-6ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-6ubuntu1 gcc-10-base_10.2.1-6ubuntu1 gcc-11-base_11-20210123-1ubuntu1 gcc-9_9.3.0-19ubuntu2 gcc-9-base_9.3.0-19ubuntu2 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gfortran-9_9.3.0-19ubuntu2 gpg_2.2.20-1ubuntu2 gpg-agent_2.2.20-1ubuntu2 gpgconf_2.2.20-1ubuntu2 gpgv_2.2.20-1ubuntu2 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu2 hostname_3.23 ibverbs-providers_33.0-1 icu-devtools_67.1-5 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libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcbor0.6_0.6.0-0ubuntu3 libcc1-0_11-20210123-1ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcrypto++-dev_8.4.0-1 libcrypto++8_8.4.0-1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20210106-1ubuntu2 libctf0_2.35.50.20210106-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.256ubuntu1 libdebhelper-perl_13.3.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.7.1ubuntu1 libedit2_3.1-20191231-2 libelf1_0.182-3 libevent-2.1-7_2.1.12-stable-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.45.6-1ubuntu1 libfabric1_1.11.0-2 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfido2-1_1.6.0-2 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libxml2_2.9.10+dfsg-6.3build1 libxnvctrl0_440.82-0ubuntu1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.8.0-36.40+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 ocl-icd-libopencl1_2.2.14-2 openmpi-bin_4.0.5-7ubuntu1 openmpi-common_4.0.5-7ubuntu1 openssh-client_1:8.4p1-3 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-murasaki-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020f-1ubuntu2 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 12 12:18:04 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./murasaki_1.68.6-10build1.dsc dpkg-source: info: extracting murasaki in /<> dpkg-source: info: unpacking murasaki_1.68.6.orig.tar.gz dpkg-source: info: unpacking murasaki_1.68.6.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking murasaki_1.68.6-10build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_proper_libboost_names.patch dpkg-source: info: applying include_libpstream.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying man_syntax.patch dpkg-source: info: applying freebsd.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying fix_mpi.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20656743 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20656743 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20656743 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package murasaki dpkg-buildpackage: info: source version 1.68.6-10build1 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -rf *.o *~ .*~ core make -C src clean make[2]: Entering directory '/<>/src' rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- USE_MPI=YES make -j4 "INSTALL=install --strip-program=true" USE_MPI=YES make[2]: Entering directory '/<>' make -C src all make[3]: Entering directory '/<>/src' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c murasaki.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c timing.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c dinkymath.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c sequence.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c msethash.cc sequence.cc: In destructor ‘Sequence::~Sequence()’: sequence.cc:377:2: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 377 | throw MurasakiException("Couldn't mark System V IPC shared memory region for deletion for sequence "+name+strerror(errno)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequence.cc:377:2: note: in C++11 destructors default to ‘noexcept’ sequence.cc: In member function ‘void BitSequence::loadBinary(const SequenceBinary&)’: sequence.cc:1113:136: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘ShmVector >::val_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1113 | memcpy(&matchRegions.front(),binseq.regions[srcMatchRegionsIdx],sizeof(SequenceBinary::Region)*binseq.regionSizes[srcMatchRegionsIdx]); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘ShmVector >::val_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ sequence.cc:1114:97: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘ShmVector >::val_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1114 | memcpy(&subSeqs.front(),binseq.regions[0],sizeof(SequenceBinary::Region)*binseq.regionSizes[0]); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘ShmVector >::val_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ sequence.cc: In destructor ‘BitSequence::~BitSequence()’: sequence.cc:1394:2: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 1394 | throw MurasakiException("Couldn't detach System V shared memory region for "+(seq ? seq->filename:string("(anon)"))+strerror(errno)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequence.cc:1394:2: note: in C++11 destructors default to ‘noexcept’ dinkymath.cc: In function ‘std::string littleEndianStr(unsigned int, int)’: dinkymath.cc:40:7: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 40 | int last=0; | ^~~~ dinkymath.cc: In function ‘std::string littleEndianPat(unsigned int, int)’: dinkymath.cc:53:7: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 53 | int last=0; | ^~~~ sequence.cc: In member function ‘std::pair IntervalSet::entropy() const’: sequence.cc:3332:10: warning: variable ‘shortest’ set but not used [-Wunused-but-set-variable] 3332 | SeqPos shortest=0,shortlen=length(spaces[0]); | ^~~~~~~~ In file included from sequence.h:44, from murasaki.h:24, from sequence.cc:28: shmvector.hh: In instantiation of ‘void ShmVector::shmRealloc(size_t) [with T = std::pair; size_t = long unsigned int]’: shmvector.hh:282:5: required from ‘void ShmVector::resize(size_t) [with T = std::pair; size_t = long unsigned int]’ sequence.cc:1110:39: required from here shmvector.hh:225:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘struct std::pair’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 225 | memcpy(_data,old_data,(oldByteCapacity<_byteCapacity ? oldByteCapacity:_byteCapacity)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘struct std::pair’ declared here 211 | struct pair | ^~~~ murasaki.cc: In function ‘void procLocs(LocList&, std::__cxx11::list&, int, int)’: murasaki.cc:1008:8: warning: variable ‘revZero’ set but not used [-Wunused-but-set-variable] 1008 | bool revZero=false; | ^~~~~~~ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c options.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c ecohash.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c ecolist.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c murasaki_mpi.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c arrayhash.cc murasaki_mpi.cc: In function ‘void mpi_hasher_client_mode(BitSequence*)’: murasaki_mpi.cc:561:9: warning: variable ‘send_done’ set but not used [-Wunused-but-set-variable] 561 | int send_done; | ^~~~~~~~~ murasaki_mpi.cc: In function ‘word mpi_extract_checkSentQueue(std::vector >&, std::vector > >&, std::multimap&)’: murasaki_mpi.cc:1025:7: warning: use of an operand of type ‘bool’ in ‘operator++’ is deprecated [-Wdeprecated] 1025 | packetsLeft++; | ^~~~~~~~~~~ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c seqread.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c scoring.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c openhash.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c genopts.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c binseq.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c cgr-image.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c cgr.cc binseq.cc: In member function ‘bool SequenceBinary::save(std::string)’: binseq.cc:70:28: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 70 | }catch(ofstream::failure e){ | ^ binseq.cc: In member function ‘void SequenceBinary::fillCopyVectors()’: binseq.cc:158:67: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 158 | memcpy(&subSeqs.front(),regions[0],regionSizes[0]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ binseq.cc:160:75: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 160 | memcpy(&readableRegions.front(),regions[1],regionSizes[1]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ binseq.cc:162:75: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 162 | memcpy(&unmaskedRegions.front(),regions[2],regionSizes[2]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ cgr.cc: In member function ‘void Cgr::merge(Cgr&)’: cgr.cc:140:7: warning: variable ‘redist’ set but not used [-Wunused-but-set-variable] 140 | int redist=(unsigned long)(rez*rez)<=seedcount; | ^~~~~~ cgr.cc: In member function ‘bool Cgr::savePNG(std::string)’: cgr.cc:288:7: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 288 | int res; | ^~~ cgr.cc: In member function ‘int PgmBuffer::loadPGM(std::string)’: cgr.cc:435:7: warning: variable ‘wordwidth’ set but not used [-Wunused-but-set-variable] 435 | int wordwidth=1; | ^~~~~~~~~ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c cgr-compare.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c cgr-random.cc cgr.cc: In member function ‘int PgmBuffer::loadBinaryPGM(std::string)’: cgr.cc:557:31: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 557 | if(data.size()<(uint)(height*width)) | ~~~~~~~^~~~~~~ cgr.cc:557:31: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] cgr.cc: In member function ‘int PgmBuffer::loadPGM(std::string)’: cgr.cc:485:31: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 485 | if(data.size()<(uint)(height*width)) | ~~~~~~~^~~~~~~ cgr.cc:485:31: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c cgr-sample.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c testeco.cc cgr-sample.cc: In function ‘int main(int, char**)’: cgr-sample.cc:54:8: warning: variable ‘repeatmask’ set but not used [-Wunused-but-set-variable] 54 | bool repeatmask=false,save=false; | ^~~~~~~~~~ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c align-compare.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c alignments.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c align-or.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c geneparse.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c align-and.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c align-best.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c align-coverage.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c getsegments.cc mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -c mbfa.cc align-coverage.cc: In function ‘int main(int, char**)’: align-coverage.cc:148:10: warning: variable ‘seqStats’ set but not used [-Wunused-but-set-variable] 148 | bool seqStats=true; | ^~~~~~~~ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now getsegments.cc: In function ‘size_t getSubSeqs(SequenceFileReader&, std::__cxx11::list > >&, std::string)’: getsegments.cc:153:29: warning: catching polymorphic type ‘class boost::bad_lexical_cast’ by value [-Wcatch-value=] 153 | }catch(bad_lexical_cast e){ | ^ mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' for bin in geneparse mbfa murasaki cgr-* testeco align-* ; do \ mv ${bin} ${bin}-mpi ; \ done make clean make[2]: Entering directory '/<>' rm -rf *.o *~ .*~ core make -C src clean make[3]: Entering directory '/<>/src' rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' dh_auto_build -- USE_MPI=NO make -j4 "INSTALL=install --strip-program=true" USE_MPI=NO make[2]: Entering directory '/<>' make -C src all make[3]: Entering directory '/<>/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c murasaki.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c timing.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c dinkymath.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c sequence.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c msethash.cc dinkymath.cc: In function ‘std::string littleEndianStr(unsigned int, int)’: dinkymath.cc:40:7: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 40 | int last=0; | ^~~~ dinkymath.cc: In function ‘std::string littleEndianPat(unsigned int, int)’: dinkymath.cc:53:7: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 53 | int last=0; | ^~~~ sequence.cc: In member function ‘void BitSequence::loadBinary(const SequenceBinary&)’: sequence.cc:1113:136: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘ShmVector >::val_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1113 | memcpy(&matchRegions.front(),binseq.regions[srcMatchRegionsIdx],sizeof(SequenceBinary::Region)*binseq.regionSizes[srcMatchRegionsIdx]); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘ShmVector >::val_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ sequence.cc:1114:97: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘ShmVector >::val_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1114 | memcpy(&subSeqs.front(),binseq.regions[0],sizeof(SequenceBinary::Region)*binseq.regionSizes[0]); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘ShmVector >::val_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ sequence.cc: In member function ‘std::pair IntervalSet::entropy() const’: sequence.cc:3332:10: warning: variable ‘shortest’ set but not used [-Wunused-but-set-variable] 3332 | SeqPos shortest=0,shortlen=length(spaces[0]); | ^~~~~~~~ In file included from sequence.h:44, from murasaki.h:24, from sequence.cc:28: shmvector.hh: In instantiation of ‘void ShmVector::shmRealloc(size_t) [with T = std::pair; size_t = long unsigned int]’: shmvector.hh:282:5: required from ‘void ShmVector::resize(size_t) [with T = std::pair; size_t = long unsigned int]’ sequence.cc:1110:39: required from here shmvector.hh:225:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘struct std::pair’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 225 | memcpy(_data,old_data,(oldByteCapacity<_byteCapacity ? oldByteCapacity:_byteCapacity)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/stl_tree.h:63, from /usr/include/c++/10/set:60, from cmultiset.h:33, from sequence.h:30, from murasaki.h:24, from sequence.cc:28: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘struct std::pair’ declared here 211 | struct pair | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c options.cc murasaki.cc: In function ‘void procLocs(LocList&, std::__cxx11::list&, int, int)’: murasaki.cc:1008:8: warning: variable ‘revZero’ set but not used [-Wunused-but-set-variable] 1008 | bool revZero=false; | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c ecohash.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c ecolist.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c murasaki_mpi.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c arrayhash.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c seqread.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c scoring.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c openhash.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c genopts.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c binseq.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c cgr-image.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c cgr.cc binseq.cc: In member function ‘bool SequenceBinary::save(std::string)’: binseq.cc:70:28: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 70 | }catch(ofstream::failure e){ | ^ binseq.cc: In member function ‘void SequenceBinary::fillCopyVectors()’: binseq.cc:158:67: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 158 | memcpy(&subSeqs.front(),regions[0],regionSizes[0]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ binseq.cc:160:75: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 160 | memcpy(&readableRegions.front(),regions[1],regionSizes[1]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ binseq.cc:162:75: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 162 | memcpy(&unmaskedRegions.front(),regions[2],regionSizes[2]*sizeof(Region)); | ^ In file included from /usr/include/c++/10/bits/stl_algobase.h:64, from /usr/include/c++/10/bits/char_traits.h:39, from /usr/include/c++/10/ios:40, from /usr/include/c++/10/istream:38, from /usr/include/c++/10/fstream:38, from seqread.h:30, from binseq.hh:31, from binseq.cc:21: /usr/include/c++/10/bits/stl_pair.h:211:12: note: ‘__gnu_cxx::__alloc_traits >, std::pair >::value_type’ {aka ‘struct std::pair’} declared here 211 | struct pair | ^~~~ cgr.cc: In member function ‘void Cgr::merge(Cgr&)’: cgr.cc:140:7: warning: variable ‘redist’ set but not used [-Wunused-but-set-variable] 140 | int redist=(unsigned long)(rez*rez)<=seedcount; | ^~~~~~ cgr.cc: In member function ‘bool Cgr::savePNG(std::string)’: cgr.cc:288:7: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 288 | int res; | ^~~ cgr.cc: In member function ‘int PgmBuffer::loadPGM(std::string)’: cgr.cc:435:7: warning: variable ‘wordwidth’ set but not used [-Wunused-but-set-variable] 435 | int wordwidth=1; | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c cgr-compare.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c cgr-random.cc cgr.cc: In member function ‘int PgmBuffer::loadBinaryPGM(std::string)’: cgr.cc:557:31: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 557 | if(data.size()<(uint)(height*width)) | ~~~~~~~^~~~~~~ cgr.cc:557:31: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] cgr.cc: In member function ‘int PgmBuffer::loadPGM(std::string)’: cgr.cc:485:31: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 485 | if(data.size()<(uint)(height*width)) | ~~~~~~~^~~~~~~ cgr.cc:485:31: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c cgr-sample.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c testeco.cc cgr-sample.cc: In function ‘int main(int, char**)’: cgr-sample.cc:54:8: warning: variable ‘repeatmask’ set but not used [-Wunused-but-set-variable] 54 | bool repeatmask=false,save=false; | ^~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c align-compare.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c alignments.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c align-or.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c geneparse.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c align-and.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c align-best.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c align-coverage.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c getsegments.cc g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -c mbfa.cc align-coverage.cc: In function ‘int main(int, char**)’: align-coverage.cc:148:10: warning: variable ‘seqStats’ set but not used [-Wunused-but-set-variable] 148 | bool seqStats=true; | ^~~~~~~~ getsegments.cc: In function ‘size_t getSubSeqs(SequenceFileReader&, std::__cxx11::list > >&, std::string)’: getsegments.cc:153:29: warning: catching polymorphic type ‘class boost::bad_lexical_cast’ by value [-Wcatch-value=] 153 | }catch(bad_lexical_cast e){ | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # using wildcards in install files is practical but it duplicates some files find debian/murasaki/usr -name "*-mpi" -delete make[1]: Leaving directory '/<>' dh_install -Nmurasaki -Nmurasaki-mpi dh_installdocs dh_installchangelogs debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' dh_installman -a mkdir -p debian/murasaki-mpi/usr/share/man/man1 for man in debian/murasaki/usr/share/man/man1/*.1 ; do \ cp -a ${man} debian/murasaki-mpi/usr/share/man/man1/`basename ${man} .1`-mpi.1 ; \ done make[1]: Leaving directory '/<>' debian/rules override_dh_installman-indep make[1]: Entering directory '/<>' dh_installman -i # create manpages for PL files mkdir -p debian/murasaki-common/usr/share/man/man1 for pscript in debian/murasaki-common/usr/lib/debian-med/bin/* ; do \ pod2man ${pscript} > debian/murasaki-common/usr/share/man/man1/`basename ${pscript}`.1 ; \ done pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/anchors2maf.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/anchors2osfinder.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/antisense.pl debian/murasaki-common/usr/lib/debian-med/bin/chromostitch.pl around line 134: '=item' outside of any '=over' debian/murasaki-common/usr/lib/debian-med/bin/chromostitch.pl around line 141: You forgot a '=back' before '=head1' POD document had syntax errors at /usr/bin/pod2man line 69. pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/dna2binary.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/dnashuffle.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/geneparse.pl debian/murasaki-common/usr/lib/debian-med/bin/getcds.pl around line 646: '=item' outside of any '=over' debian/murasaki-common/usr/lib/debian-med/bin/getcds.pl around line 646: =over without closing =back POD document had syntax errors at /usr/bin/pod2man line 69. pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/humantime.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/osfinder2anchors.pl pod2man: unable to format debian/murasaki-common/usr/lib/debian-med/bin/randpat.pl find debian/murasaki-common/usr/share/man/man1 -empty -delete make[1]: Leaving directory '/<>' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/<>' dh_fixperms -i chmod a+x debian/murasaki-common/usr/share/perl5/murasaki/config.pl make[1]: Leaving directory '/<>' dh_fixperms -Nmurasaki-common dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package murasaki-common: substitution variable ${misc:perl} used, but is not defined dpkg-gencontrol: warning: package murasaki-mpi: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package murasaki-common: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing murasaki (in debian/murasaki); do_strip: , oemstrip: pkgstriptranslations: processing murasaki-mpi (in debian/murasaki-mpi); do_strip: , oemstrip: pkgstriptranslations: processing murasaki-common (in debian/murasaki-common); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/murasaki-common/DEBIAN/control, package murasaki-common, directory debian/murasaki-common INFO: pkgstripfiles: waiting for lock (murasaki-common) ... pkgstripfiles: processing control file: debian/murasaki-mpi/DEBIAN/control, package murasaki-mpi, directory debian/murasaki-mpi INFO: pkgstripfiles: waiting for lock (murasaki-mpi) ... pkgstripfiles: processing control file: debian/murasaki/DEBIAN/control, package murasaki, directory debian/murasaki Skipping arch: any to arch: all dependency to murasaki-common pkgstripfiles: Truncating usr/share/doc/murasaki/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package murasaki ... pkgstripfiles: No PNG files. dpkg-deb: building package 'murasaki' in '../murasaki_1.68.6-10build1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (murasaki-common) ... Skipping arch: any to arch: all dependency to murasaki-common pkgstripfiles: Truncating usr/share/doc/murasaki-mpi/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package murasaki-mpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'murasaki-mpi' in '../murasaki-mpi_1.68.6-10build1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/murasaki-common/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package murasaki-common ... pkgstripfiles: No PNG files. dpkg-deb: building package 'murasaki-common' in '../murasaki-common_1.68.6-10build1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../murasaki_1.68.6-10build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-01-26T14:46:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ murasaki_1.68.6-10build1_amd64.changes: --------------------------------------- Format: 1.8 Date: Sat, 12 Dec 2020 13:08:59 +0100 Source: murasaki Binary: murasaki murasaki-common murasaki-mpi Architecture: all amd64 Version: 1.68.6-10build1 Distribution: hirsute Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: murasaki - homology detection tool across multiple large genomes murasaki-common - homology detection tool across multiple large genomes (common fil murasaki-mpi - homology detection tool across multiple large genomes (MPI-versio Changes: murasaki (1.68.6-10build1) hirsute; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: c98b0e74a2d3e03acd92ce72fb9ca3cd881d8673 144852 murasaki-common_1.68.6-10build1_all.deb ed3caca833b899520711518f1b108023ae9c475f 653264 murasaki-mpi_1.68.6-10build1_amd64.deb a52e784ae6dabfb4cc6adfc4a96e54ee760ea6d3 8767 murasaki_1.68.6-10build1_amd64.buildinfo 02bd9f55e82c6a946ee685953dec45be235696d1 529644 murasaki_1.68.6-10build1_amd64.deb Checksums-Sha256: 318988e2964f32ef20a0baab870c0c5a9d4776d0f9c0de33339b8cf33b0bf290 144852 murasaki-common_1.68.6-10build1_all.deb ccc991923d6baaf63cb8b4daf3dbe57c4de9e9de3a4fbd2c0021429eb32490aa 653264 murasaki-mpi_1.68.6-10build1_amd64.deb bb29dcec9dd0bc6fe82e38ccdeaecf5e63a6fee75dfa018184fddc420dc938ef 8767 murasaki_1.68.6-10build1_amd64.buildinfo 44ef50e2fa0d5c013d5808eb77b17d1344db29c749cfcdbdb1823ed3c6bb0ff9 529644 murasaki_1.68.6-10build1_amd64.deb Files: 8e1ed8a7ca0b3e83eb433ef4dd3b27c4 144852 science optional murasaki-common_1.68.6-10build1_all.deb 84f683a36aaf2d855c299f03f3507df6 653264 science optional murasaki-mpi_1.68.6-10build1_amd64.deb e149b2e308dfc45e2acd2fdd02e7d957 8767 science optional murasaki_1.68.6-10build1_amd64.buildinfo 6afb257760f5e72111af0aca63e342ae 529644 science optional murasaki_1.68.6-10build1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: murasaki Binary: murasaki murasaki-common murasaki-mpi Architecture: all amd64 Version: 1.68.6-10build1 Checksums-Md5: 8e1ed8a7ca0b3e83eb433ef4dd3b27c4 144852 murasaki-common_1.68.6-10build1_all.deb 84f683a36aaf2d855c299f03f3507df6 653264 murasaki-mpi_1.68.6-10build1_amd64.deb 6afb257760f5e72111af0aca63e342ae 529644 murasaki_1.68.6-10build1_amd64.deb Checksums-Sha1: c98b0e74a2d3e03acd92ce72fb9ca3cd881d8673 144852 murasaki-common_1.68.6-10build1_all.deb ed3caca833b899520711518f1b108023ae9c475f 653264 murasaki-mpi_1.68.6-10build1_amd64.deb 02bd9f55e82c6a946ee685953dec45be235696d1 529644 murasaki_1.68.6-10build1_amd64.deb Checksums-Sha256: 318988e2964f32ef20a0baab870c0c5a9d4776d0f9c0de33339b8cf33b0bf290 144852 murasaki-common_1.68.6-10build1_all.deb ccc991923d6baaf63cb8b4daf3dbe57c4de9e9de3a4fbd2c0021429eb32490aa 653264 murasaki-mpi_1.68.6-10build1_amd64.deb 44ef50e2fa0d5c013d5808eb77b17d1344db29c749cfcdbdb1823ed3c6bb0ff9 529644 murasaki_1.68.6-10build1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 26 Jan 2021 14:46:34 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20210106-1ubuntu2), binutils-common (= 2.35.50.20210106-1ubuntu2), binutils-x86-64-linux-gnu (= 2.35.50.20210106-1ubuntu2), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-6ubuntu1), cpp-9 (= 9.3.0-19ubuntu2), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.74), debhelper (= 13.3.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.10.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.7.1ubuntu1), dpkg-dev (= 1.20.7.1ubuntu1), dwz (= 0.13+20210118-1), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-6ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-6ubuntu1), gcc-10-base (= 10.2.1-6ubuntu1), gcc-11-base (= 11-20210123-1ubuntu1), gcc-9 (= 9.3.0-19ubuntu2), gcc-9-base (= 9.3.0-19ubuntu2), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), gfortran-9 (= 9.3.0-19ubuntu2), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu2), hostname (= 3.23), ibverbs-providers (= 33.0-1), icu-devtools (= 67.1-5), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-19ubuntu2), libasan6 (= 11-20210123-1ubuntu1), libatomic1 (= 11-20210123-1ubuntu1), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:2.8.5-3ubuntu3), libaudit1 (= 1:2.8.5-3ubuntu3), libbinutils (= 2.35.50.20210106-1ubuntu2), libblkid1 (= 2.36.1-1ubuntu2), libboost-filesystem-dev (= 1.74.0.3ubuntu2), libboost-filesystem1.74-dev (= 1.74.0-3ubuntu2), libboost-filesystem1.74.0 (= 1.74.0-3ubuntu2), libboost-iostreams-dev (= 1.74.0.3ubuntu2), libboost-iostreams1.74-dev (= 1.74.0-3ubuntu2), libboost-iostreams1.74.0 (= 1.74.0-3ubuntu2), libboost-regex-dev (= 1.74.0.3ubuntu2), libboost-regex1.74-dev (= 1.74.0-3ubuntu2), libboost-regex1.74.0 (= 1.74.0-3ubuntu2), libboost-system1.74-dev (= 1.74.0-3ubuntu2), libboost-system1.74.0 (= 1.74.0-3ubuntu2), libboost1.74-dev (= 1.74.0-3ubuntu2), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu6), libc-dev-bin (= 2.32-0ubuntu6), libc6 (= 2.32-0ubuntu6), libc6-dev (= 2.32-0ubuntu6), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1), libcbor0.6 (= 0.6.0-0ubuntu3), libcc1-0 (= 11-20210123-1ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libcrypto++-dev (= 8.4.0-1), libcrypto++8 (= 8.4.0-1), libctf-nobfd0 (= 2.35.50.20210106-1ubuntu2), libctf0 (= 2.35.50.20210106-1ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.256ubuntu1), libdebhelper-perl (= 13.3.1ubuntu1), libdpkg-perl (= 1.20.7.1ubuntu1), libedit2 (= 3.1-20191231-2), libelf1 (= 0.182-3), libevent-2.1-7 (= 2.1.12-stable-1), libevent-core-2.1-7 (= 2.1.12-stable-1), libevent-dev (= 2.1.12-stable-1), libevent-extra-2.1-7 (= 2.1.12-stable-1), libevent-openssl-2.1-7 (= 2.1.12-stable-1), libevent-pthreads-2.1-7 (= 2.1.12-stable-1), libfabric1 (= 1.11.0-2), libfido2-1 (= 1.6.0-2), libfile-stripnondeterminism-perl (= 1.10.0-1), libgcc-10-dev (= 10.2.1-6ubuntu1), libgcc-9-dev (= 9.3.0-19ubuntu2), libgcc-s1 (= 11-20210123-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran-9-dev (= 9.3.0-19ubuntu2), libgfortran5 (= 11-20210123-1ubuntu1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 11-20210123-1ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libhwloc-dev (= 2.4.0+dfsg-3), libhwloc-plugins (= 2.4.0+dfsg-3), libhwloc15 (= 2.4.0+dfsg-3), libibverbs-dev (= 33.0-1), libibverbs1 (= 33.0-1), libicu-dev (= 67.1-5), libicu67 (= 67.1-5), libisl23 (= 0.23-1), libitm1 (= 11-20210123-1ubuntu1), libjs-jquery (= 3.5.1+dfsg+~3.5.5-7), libjs-jquery-ui (= 1.12.1+dfsg-8), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), liblsan0 (= 11-20210123-1ubuntu1), libltdl-dev (= 2.4.6-15), libltdl7 (= 2.4.6-15), liblz4-1 (= 1.9.3-0ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnl-3-200 (= 3.4.0-1), libnl-3-dev (= 3.4.0-1), libnl-route-3-200 (= 3.4.0-1), libnl-route-3-dev (= 3.4.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnuma-dev (= 2.0.12-1build1), libnuma1 (= 2.0.12-1build1), libopenmpi-dev (= 4.0.5-7ubuntu1), libopenmpi3 (= 4.0.5-7ubuntu1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpciaccess0 (= 0.16-1), libpcre2-8-0 (= 10.35-2ubuntu1), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpmix-dev (= 3.2.2~rc1-1ubuntu1), libpmix2 (= 3.2.2~rc1-1ubuntu1), libpsm-infinipath1 (= 3.3+20.604758e7-6.1), libpsm2-2 (= 11.2.185-1), libpstreams-dev (= 1.0.3-1), libquadmath0 (= 11-20210123-1ubuntu1), librdmacm1 (= 33.0-1), libseccomp2 (= 2.4.3-1ubuntu6), libselinux1 (= 3.1-2build2), libsemanage-common (= 3.1-1build2), libsemanage1 (= 3.1-1build2), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-3), libsmartcols1 (= 2.36.1-1ubuntu2), libssl1.1 (= 1.1.1f-1ubuntu5), libstdc++-10-dev (= 10.2.1-6ubuntu1), libstdc++6 (= 11-20210123-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.1-4ubuntu1), libterm-readkey-perl (= 2.38-1build2), libtext-wrapper-perl (= 1.05-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 11-20210123-1ubuntu1), libubsan1 (= 11-20210123-1ubuntu1), libuchardet0 (= 0.0.7-1), libucx0 (= 1.9.0~rc1-2build4), libudev1 (= 247.1-4ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libx11-6 (= 2:1.7.0-2), libx11-data (= 2:1.7.0-2), libxau6 (= 1:1.0.9-0ubuntu1), libxcb1 (= 1.14-2.1), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.3build1), libxnvctrl0 (= 440.82-0ubuntu1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.8.0-36.40+21.04.1), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), ocl-icd-libopencl1 (= 2.2.14-2), openmpi-bin (= 4.0.5-7ubuntu1), openmpi-common (= 4.0.5-7ubuntu1), openssh-client (= 1:8.4p1-3), passwd (= 1:4.8.1-1ubuntu8), patch (= 2.7.6-7), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607774939" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ murasaki-common_1.68.6-10build1_all.deb --------------------------------------- new Debian package, version 2.0. size 144852 bytes: control archive=3264 bytes. 1367 bytes, 29 lines control 6185 bytes, 85 lines md5sums Package: murasaki-common Source: murasaki Version: 1.68.6-10build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 433 Depends: gnuplot | gnuplot5, libbio-perl-perl, r-cran-rocr, imagemagick Recommends: libterm-readkey-perl, libtext-wrapi18n-perl | libtext-wrapper-perl Section: science Priority: optional Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/ Description: homology detection tool across multiple large genomes (common files) Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. . Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction . This package contains all files that are common to the single core murasaki package and the multi core murasaki-mpi package. drwxr-xr-x root/root 0 2020-12-12 12:08 ./ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 3948 2010-08-24 14:18 ./usr/lib/debian-med/bin/align2kog.pl -rwxr-xr-x root/root 5024 2010-08-24 14:18 ./usr/lib/debian-med/bin/analyze-pat.pl -rwxr-xr-x root/root 3917 2010-08-24 14:18 ./usr/lib/debian-med/bin/anchors2maf.pl -rwxr-xr-x root/root 5334 2010-08-24 14:18 ./usr/lib/debian-med/bin/anchors2osfinder.pl -rwxr-xr-x root/root 1973 2010-08-24 14:18 ./usr/lib/debian-med/bin/antisense.pl -rwxr-xr-x root/root 4401 2010-08-24 14:18 ./usr/lib/debian-med/bin/chromostitch.pl -rwxr-xr-x root/root 2745 2010-08-24 14:18 ./usr/lib/debian-med/bin/dna2binary.pl -rwxr-xr-x root/root 1939 2010-08-24 14:18 ./usr/lib/debian-med/bin/dnashuffle.pl -rwxr-xr-x root/root 2331 2010-08-24 14:18 ./usr/lib/debian-med/bin/faformat.pl -rwxr-xr-x root/root 55969 2020-12-12 12:08 ./usr/lib/debian-med/bin/filter.pl -rwxr-xr-x root/root 7335 2010-08-24 14:18 ./usr/lib/debian-med/bin/gatherstats.pl -rwxr-xr-x root/root 8380 2010-08-24 14:18 ./usr/lib/debian-med/bin/geneparse.pl -rwxr-xr-x root/root 21536 2010-08-24 14:18 ./usr/lib/debian-med/bin/getcds.pl -rwxr-xr-x root/root 3644 2010-08-24 14:18 ./usr/lib/debian-med/bin/getgene.pl -rwxr-xr-x root/root 5458 2010-08-24 14:18 ./usr/lib/debian-med/bin/histocomp.pl -rwxr-xr-x root/root 4341 2010-08-24 14:18 ./usr/lib/debian-med/bin/histoplot.pl -rwxr-xr-x root/root 7097 2010-08-24 14:18 ./usr/lib/debian-med/bin/homology-score.pl -rwxr-xr-x root/root 898 2010-08-24 14:18 ./usr/lib/debian-med/bin/humantime.pl -rwxr-xr-x root/root 4675 2010-08-24 14:18 ./usr/lib/debian-med/bin/interpolate.pl -rwxr-xr-x root/root 6016 2010-08-24 14:18 ./usr/lib/debian-med/bin/kogalign.pl -rwxr-xr-x root/root 5770 2010-08-24 14:18 ./usr/lib/debian-med/bin/lav2murasaki.pl -rwxr-xr-x root/root 8150 2010-08-24 14:18 ./usr/lib/debian-med/bin/maf2anchors.pl -rwxr-xr-x root/root 4012 2010-08-24 14:18 ./usr/lib/debian-med/bin/mauve2anchors.pl -rwxr-xr-x root/root 5185 2010-08-24 14:18 ./usr/lib/debian-med/bin/mauveAlignment2anchors.pl -rwxr-xr-x root/root 2931 2010-08-24 14:18 ./usr/lib/debian-med/bin/mbgd-to-kog.pl -rwxr-xr-x root/root 1473 2010-08-24 14:18 ./usr/lib/debian-med/bin/mfasplit.pl -rwxr-xr-x root/root 3708 2010-08-24 14:18 ./usr/lib/debian-med/bin/names2kog.pl -rwxr-xr-x root/root 4090 2010-08-24 14:18 ./usr/lib/debian-med/bin/osfinder2anchors.pl -rwxr-xr-x root/root 2734 2010-08-24 14:18 ./usr/lib/debian-med/bin/overlay.pl -rwxr-xr-x root/root 3765 2010-08-24 14:18 ./usr/lib/debian-med/bin/phAlignment2anchors.pl -rwxr-xr-x root/root 6152 2020-12-12 12:08 ./usr/lib/debian-med/bin/qlob.pl -rwxr-xr-x root/root 1952 2010-08-24 14:18 ./usr/lib/debian-med/bin/randpat.pl -rwxr-xr-x root/root 3051 2010-08-24 14:18 ./usr/lib/debian-med/bin/rearrange.pl -rwxr-xr-x root/root 2794 2010-08-24 14:18 ./usr/lib/debian-med/bin/repeats2anchors.pl -rwxr-xr-x root/root 10809 2010-08-24 14:18 ./usr/lib/debian-med/bin/repeatviz.pl -rwxr-xr-x root/root 9502 2010-08-24 14:18 ./usr/lib/debian-med/bin/roc-at-cutoff.pl -rwxr-xr-x root/root 6378 2020-12-12 12:08 ./usr/lib/debian-med/bin/simpal.pl -rwxr-xr-x root/root 13783 2010-08-24 14:18 ./usr/lib/debian-med/bin/simplegraph.pl -rwxr-xr-x root/root 6884 2010-08-24 14:18 ./usr/lib/debian-med/bin/stat-histo.pl -rwxr-xr-x root/root 6875 2010-08-24 14:18 ./usr/lib/debian-med/bin/stat-vs-stat.pl -rwxr-xr-x root/root 14985 2020-12-12 12:08 ./usr/lib/debian-med/bin/substitch.pl drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/murasaki-common/ -rw-r--r-- root/root 238 2020-08-18 11:14 ./usr/share/doc/murasaki-common/README.Debian -rw-r--r-- root/root 1201 2020-12-12 12:08 ./usr/share/doc/murasaki-common/changelog.Debian.gz -rw-r--r-- root/root 2225 2020-08-18 11:14 ./usr/share/doc/murasaki-common/copyright drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2020-08-18 11:14 ./usr/share/lintian/overrides/murasaki-common drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/man1/ -rw-r--r-- root/root 1964 2020-12-12 12:08 ./usr/share/man/man1/align2kog.pl.1.gz -rw-r--r-- root/root 1944 2020-12-12 12:08 ./usr/share/man/man1/analyze-pat.pl.1.gz -rw-r--r-- root/root 2191 2020-12-12 12:08 ./usr/share/man/man1/chromostitch.pl.1.gz -rw-r--r-- root/root 2027 2020-12-12 12:08 ./usr/share/man/man1/faformat.pl.1.gz -rw-r--r-- root/root 4042 2020-12-12 12:08 ./usr/share/man/man1/filter.pl.1.gz -rw-r--r-- root/root 2015 2020-12-12 12:08 ./usr/share/man/man1/gatherstats.pl.1.gz -rw-r--r-- root/root 2717 2020-12-12 12:08 ./usr/share/man/man1/getcds.pl.1.gz -rw-r--r-- root/root 1963 2020-12-12 12:08 ./usr/share/man/man1/getgene.pl.1.gz -rw-r--r-- root/root 2019 2020-12-12 12:08 ./usr/share/man/man1/histocomp.pl.1.gz -rw-r--r-- root/root 2416 2020-12-12 12:08 ./usr/share/man/man1/histoplot.pl.1.gz -rw-r--r-- root/root 2015 2020-12-12 12:08 ./usr/share/man/man1/homology-score.pl.1.gz -rw-r--r-- root/root 1981 2020-12-12 12:08 ./usr/share/man/man1/interpolate.pl.1.gz -rw-r--r-- root/root 1941 2020-12-12 12:08 ./usr/share/man/man1/kogalign.pl.1.gz -rw-r--r-- root/root 2135 2020-12-12 12:08 ./usr/share/man/man1/lav2murasaki.pl.1.gz -rw-r--r-- root/root 2285 2020-12-12 12:08 ./usr/share/man/man1/maf2anchors.pl.1.gz -rw-r--r-- root/root 1917 2020-12-12 12:08 ./usr/share/man/man1/mauve2anchors.pl.1.gz -rw-r--r-- root/root 2035 2020-12-12 12:08 ./usr/share/man/man1/mauveAlignment2anchors.pl.1.gz -rw-r--r-- root/root 1939 2020-12-12 12:08 ./usr/share/man/man1/mbgd-to-kog.pl.1.gz -rw-r--r-- root/root 1868 2020-12-12 12:08 ./usr/share/man/man1/mfasplit.pl.1.gz -rw-r--r-- root/root 2060 2020-12-12 12:08 ./usr/share/man/man1/names2kog.pl.1.gz -rw-r--r-- root/root 2145 2020-12-12 12:08 ./usr/share/man/man1/overlay.pl.1.gz -rw-r--r-- root/root 1910 2020-12-12 12:08 ./usr/share/man/man1/phAlignment2anchors.pl.1.gz -rw-r--r-- root/root 2325 2020-12-12 12:08 ./usr/share/man/man1/qlob.pl.1.gz -rw-r--r-- root/root 1942 2020-12-12 12:08 ./usr/share/man/man1/rearrange.pl.1.gz -rw-r--r-- root/root 1892 2020-12-12 12:08 ./usr/share/man/man1/repeats2anchors.pl.1.gz -rw-r--r-- root/root 2521 2020-12-12 12:08 ./usr/share/man/man1/repeatviz.pl.1.gz -rw-r--r-- root/root 2405 2020-12-12 12:08 ./usr/share/man/man1/roc-at-cutoff.pl.1.gz -rw-r--r-- root/root 2071 2020-12-12 12:08 ./usr/share/man/man1/simpal.pl.1.gz -rw-r--r-- root/root 2335 2020-12-12 12:08 ./usr/share/man/man1/simplegraph.pl.1.gz -rw-r--r-- root/root 2288 2020-12-12 12:08 ./usr/share/man/man1/stat-histo.pl.1.gz -rw-r--r-- root/root 2389 2020-12-12 12:08 ./usr/share/man/man1/stat-vs-stat.pl.1.gz -rw-r--r-- root/root 2441 2020-12-12 12:08 ./usr/share/man/man1/substitch.pl.1.gz drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/perl5/murasaki/ -rw-r--r-- root/root 3047 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki.pm drwxr-xr-x root/root 0 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/ -rw-r--r-- root/root 8037 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/KOG.pm -rw-r--r-- root/root 7146 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/OrthoConsistency.pm -rw-r--r-- root/root 4383 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/OrthoList.pm -rw-r--r-- root/root 8019 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/OrthoPairs.pm -rw-r--r-- root/root 2893 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/SeqFeatures.pm -rw-r--r-- root/root 1459 2010-08-24 14:18 ./usr/share/perl5/murasaki/Murasaki/Ticker.pm -rwxr-xr-x root/root 137 2020-08-18 11:14 ./usr/share/perl5/murasaki/config.pl murasaki-mpi_1.68.6-10build1_amd64.deb -------------------------------------- new Debian package, version 2.0. size 653264 bytes: control archive=1652 bytes. 1467 bytes, 29 lines control 1326 bytes, 20 lines md5sums Package: murasaki-mpi Source: murasaki Version: 1.68.6-10build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4255 Depends: murasaki-common, libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-regex1.74.0-icu67, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libopenmpi3 (>= 4.0.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/ Description: homology detection tool across multiple large genomes (MPI-version) Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. . Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction . This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor. drwxr-xr-x root/root 0 2020-12-12 12:08 ./ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/bin/ -rwxr-xr-x root/root 269200 2020-12-12 12:08 ./usr/bin/geneparse-mpi -rwxr-xr-x root/root 391960 2020-12-12 12:08 ./usr/bin/mbfa-mpi -rwxr-xr-x root/root 885784 2020-12-12 12:08 ./usr/bin/murasaki-mpi drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/murasaki/ -rwxr-xr-x root/root 268984 2020-12-12 12:08 ./usr/lib/murasaki/align-and-mpi -rwxr-xr-x root/root 277208 2020-12-12 12:08 ./usr/lib/murasaki/align-best-mpi -rwxr-xr-x root/root 305920 2020-12-12 12:08 ./usr/lib/murasaki/align-compare-mpi -rwxr-xr-x root/root 412440 2020-12-12 12:08 ./usr/lib/murasaki/align-coverage-mpi -rwxr-xr-x root/root 268952 2020-12-12 12:08 ./usr/lib/murasaki/align-or-mpi -rwxr-xr-x root/root 178816 2020-12-12 12:08 ./usr/lib/murasaki/cgr-compare-mpi -rwxr-xr-x root/root 404344 2020-12-12 12:08 ./usr/lib/murasaki/cgr-image-mpi -rwxr-xr-x root/root 7138 2010-08-24 14:18 ./usr/lib/murasaki/cgr-image.pl-mpi -rwxr-xr-x root/root 187048 2020-12-12 12:08 ./usr/lib/murasaki/cgr-random-mpi -rwxr-xr-x root/root 318288 2020-12-12 12:08 ./usr/lib/murasaki/cgr-sample-mpi -rwxr-xr-x root/root 141800 2020-12-12 12:08 ./usr/lib/murasaki/testeco-mpi drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/murasaki-mpi/ -rw-r--r-- root/root 249 2020-08-18 11:14 ./usr/share/doc/murasaki-mpi/README.test -rw-r--r-- root/root 1199 2020-12-12 12:08 ./usr/share/doc/murasaki-mpi/changelog.Debian.gz -rw-r--r-- root/root 2225 2020-08-18 11:14 ./usr/share/doc/murasaki-mpi/copyright drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/man1/ -rw-r--r-- root/root 2518 2020-12-12 12:08 ./usr/share/man/man1/geneparse-mpi.1.gz -rw-r--r-- root/root 2721 2020-12-12 12:08 ./usr/share/man/man1/mbfa-mpi.1.gz -rw-r--r-- root/root 10888 2020-12-12 12:08 ./usr/share/man/man1/murasaki-mpi.1.gz murasaki_1.68.6-10build1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 529644 bytes: control archive=1512 bytes. 1268 bytes, 25 lines control 1182 bytes, 19 lines md5sums Package: murasaki Version: 1.68.6-10build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3351 Depends: murasaki-common, libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-regex1.74.0-icu67, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Recommends: murasaki-examples Section: science Priority: optional Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/ Description: homology detection tool across multiple large genomes Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering. . Murasaki is an anchor alignment software, which is * exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction drwxr-xr-x root/root 0 2020-12-12 12:08 ./ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/bin/ -rwxr-xr-x root/root 269192 2020-12-12 12:08 ./usr/bin/geneparse -rwxr-xr-x root/root 322320 2020-12-12 12:08 ./usr/bin/mbfa -rwxr-xr-x root/root 701424 2020-12-12 12:08 ./usr/bin/murasaki drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/lib/murasaki/ -rwxr-xr-x root/root 199352 2020-12-12 12:08 ./usr/lib/murasaki/align-and -rwxr-xr-x root/root 203480 2020-12-12 12:08 ./usr/lib/murasaki/align-best -rwxr-xr-x root/root 232192 2020-12-12 12:08 ./usr/lib/murasaki/align-compare -rwxr-xr-x root/root 338704 2020-12-12 12:08 ./usr/lib/murasaki/align-coverage -rwxr-xr-x root/root 195224 2020-12-12 12:08 ./usr/lib/murasaki/align-or -rwxr-xr-x root/root 100992 2020-12-12 12:08 ./usr/lib/murasaki/cgr-compare -rwxr-xr-x root/root 330608 2020-12-12 12:08 ./usr/lib/murasaki/cgr-image -rwxr-xr-x root/root 113320 2020-12-12 12:08 ./usr/lib/murasaki/cgr-random -rwxr-xr-x root/root 318280 2020-12-12 12:08 ./usr/lib/murasaki/cgr-sample -rwxr-xr-x root/root 68072 2020-12-12 12:08 ./usr/lib/murasaki/testeco drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/doc/murasaki/ -rw-r--r-- root/root 249 2020-08-18 11:14 ./usr/share/doc/murasaki/README.test -rw-r--r-- root/root 1196 2020-12-12 12:08 ./usr/share/doc/murasaki/changelog.Debian.gz -rw-r--r-- root/root 2225 2020-08-18 11:14 ./usr/share/doc/murasaki/copyright drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-12 12:08 ./usr/share/man/man1/ -rw-r--r-- root/root 2518 2020-12-12 12:08 ./usr/share/man/man1/geneparse.1.gz -rw-r--r-- root/root 2721 2020-12-12 12:08 ./usr/share/man/man1/mbfa.1.gz -rw-r--r-- root/root 10888 2020-12-12 12:08 ./usr/share/man/man1/murasaki.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 283 Distribution: hirsute Host Architecture: amd64 Install-Time: 87 Job: murasaki_1.68.6-10build1.dsc Machine Architecture: amd64 Package: murasaki Package-Time: 372 Source-Version: 1.68.6-10build1 Space: n/a Status: successful Version: 1.68.6-10build1 -------------------------------------------------------------------------------- Finished at 2021-01-26T14:46:35Z Build needed 00:06:12, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20656743 Scanning for processes to kill in build PACKAGEBUILD-20656743