https://launchpad.net/ubuntu/+archive/test-rebuild-20181222-test/+build/16135936 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-070 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_167 python-lpbuildd_167 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 23 Feb 14:09:52 ntpdate[1846]: adjust time server 10.211.37.1 offset 0.000030 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 --image-type chroot /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-16135936 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 Starting target for build PACKAGEBUILD-16135936 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 'deb http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic main' 'deb http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic main' 'deb http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic main' 'deb http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic main' 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-16135936 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 Adding trusted keys to build-PACKAGEBUILD-16135936 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds pub rsa1024 2014-01-08 [SC] B4C3 96DF 0DD9 A0ED 00B2 1D28 8550 4128 ECF1 204C uid [ unknown] Launchpad PPA for CI Train PPA Service Team pub rsa1024 2012-12-04 [SC] CDE5 112B D410 4F97 5FC8 A53F D4C0 B668 FD4C 9139 uid [ unknown] Launchpad PPA for Canonical Foundations Team pub rsa1024 2010-04-12 [SC] DA1A 4A13 543B 4668 53BA F164 EB9B 1D88 86F4 4E2A uid [ unknown] Launchpad OpenJDK builds (all archs) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 Updating target for build PACKAGEBUILD-16135936 Get:1 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu bionic InRelease [242 kB] Get:3 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic InRelease [15.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-security InRelease [88.7 kB] Get:5 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic InRelease [15.4 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-updates InRelease [88.7 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic InRelease [15.4 kB] Get:8 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic InRelease [20.8 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main arm64 Packages [975 kB] Get:10 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic/main arm64 Packages [680 B] Get:11 http://ftpmaster.internal/ubuntu bionic/main Translation-en [516 kB] Get:12 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic/main Translation-en [632 B] Get:13 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic/main arm64 Packages [4080 B] Get:14 http://ftpmaster.internal/ubuntu bionic/universe arm64 Packages [8316 kB] Get:15 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic/main Translation-en [3620 B] Get:16 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic/main arm64 Packages [4436 B] Get:17 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:18 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic/main Translation-en [1344 B] Get:19 http://ftpmaster.internal/ubuntu bionic/multiverse arm64 Packages [126 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-security/main arm64 Packages [198 kB] Get:21 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 Packages [32.2 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-security/main Translation-en [101 kB] Get:23 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main Translation-en [14.5 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-security/universe arm64 Packages [127 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-security/universe Translation-en [71.2 kB] Get:26 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main arm64 Packages [17.3 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-security/multiverse arm64 Packages [1444 B] Get:28 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main Translation-en [7264 B] Get:29 http://ftpmaster.internal/ubuntu bionic-security/multiverse Translation-en [1848 B] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 Packages [429 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-updates/main Translation-en [196 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-updates/restricted arm64 Packages [672 B] Get:33 http://ftpmaster.internal/ubuntu bionic-updates/restricted Translation-en [3076 B] Get:34 http://ftpmaster.internal/ubuntu bionic-updates/universe arm64 Packages [623 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-updates/universe Translation-en [189 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-updates/multiverse arm64 Packages [2380 B] Get:37 http://ftpmaster.internal/ubuntu bionic-updates/multiverse Translation-en [3452 B] Fetched 17.4 MB in 7s (2439 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-aarch64-linux-gnu binutils-common bsdutils cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgomp1 libitm1 libkmod2 liblsan0 libmount1 libncurses5 libncursesw5 libperl5.26 libpng16-16 libprocps6 libsmartcols1 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pkgbinarymangler procps systemd systemd-sysv tar tzdata ubuntu-keyring util-linux 76 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 50.8 MB of archives. After this operation, 5639 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 base-files arm64 10.1ubuntu2.4 [60.0 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libtsan0 arm64 8.2.0-14ubuntu1~18.04~ppa1 [269 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 bsdutils arm64 1:2.31.1-0.4ubuntu3.3 [54.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 tar arm64 1.29b-2ubuntu0.1 [207 kB] Get:5 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 dpkg arm64 1.19.0.5ubuntu2.1 [1095 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 liblsan0 arm64 8.2.0-14ubuntu1~18.04~ppa1 [120 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libitm1 arm64 8.2.0-14ubuntu1~18.04~ppa1 [24.4 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libgomp1 arm64 8.2.0-14ubuntu1~18.04~ppa1 [69.6 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 gcc-8-base arm64 8.2.0-14ubuntu1~18.04~ppa1 [18.6 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libgcc1 arm64 1:8.2.0-14ubuntu1~18.04~ppa1 [34.3 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libcc1-0 arm64 8.2.0-14ubuntu1~18.04~ppa1 [36.4 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libatomic1 arm64 8.2.0-14ubuntu1~18.04~ppa1 [9152 B] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libstdc++6 arm64 8.2.0-14ubuntu1~18.04~ppa1 [372 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libasan4 arm64 7.4.0-3ubuntu2~18.04~ppa1 [335 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libext2fs2 arm64 1.44.1-1ubuntu1.1 [138 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 e2fsprogs arm64 1.44.1-1ubuntu1.1 [345 kB] Get:17 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libubsan0 arm64 7.4.0-3ubuntu2~18.04~ppa1 [117 kB] Get:18 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 g++-7 arm64 7.4.0-3ubuntu2~18.04~ppa1 [8056 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 ncurses-bin arm64 6.1-1ubuntu1.18.04 [154 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libperl5.26 arm64 5.26.1-6ubuntu0.3 [3326 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-security/main arm64 perl arm64 5.26.1-6ubuntu0.3 [201 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-security/main arm64 perl-base arm64 5.26.1-6ubuntu0.3 [1236 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-security/main arm64 perl-modules-5.26 all 5.26.1-6ubuntu0.3 [2763 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libuuid1 arm64 2.31.1-0.4ubuntu3.3 [18.7 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libblkid1 arm64 2.31.1-0.4ubuntu3.3 [105 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libfdisk1 arm64 2.31.1-0.4ubuntu3.3 [138 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libmount1 arm64 2.31.1-0.4ubuntu3.3 [115 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libncurses5 arm64 6.1-1ubuntu1.18.04 [77.0 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libtinfo5 arm64 6.1-1ubuntu1.18.04 [71.0 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libncursesw5 arm64 6.1-1ubuntu1.18.04 [96.4 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libsmartcols1 arm64 2.31.1-0.4ubuntu3.3 [70.9 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 fdisk arm64 2.31.1-0.4ubuntu3.3 [95.1 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 util-linux arm64 2.31.1-0.4ubuntu3.3 [818 kB] Get:34 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 gcc-7 arm64 7.4.0-3ubuntu2~18.04~ppa1 [7737 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 ncurses-base all 6.1-1ubuntu1.18.04 [17.8 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libudev1 arm64 237-3ubuntu10.13 [45.5 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libapt-pkg5.0 arm64 1.6.8 [763 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libgcrypt20 arm64 1.8.1-4ubuntu1.1 [325 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gpgv arm64 2.2.4-1ubuntu1.2 [166 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 ubuntu-keyring all 2018.09.18.1~18.04.0 [22.4 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 apt arm64 1.6.8 [1130 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libapparmor1 arm64 2.12-4ubuntu5.1 [28.4 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libcryptsetup12 arm64 2:2.0.2-1ubuntu1.1 [112 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libkmod2 arm64 24-1ubuntu3.2 [32.7 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 mount arm64 2.31.1-0.4ubuntu3.3 [97.8 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libprocps6 arm64 2:3.3.12-3ubuntu1.1 [28.6 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-security/main arm64 procps arm64 2:3.3.12-3ubuntu1.1 [207 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-security/main arm64 systemd arm64 237-3ubuntu10.13 [2551 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libsystemd0 arm64 237-3ubuntu10.13 [171 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-security/main arm64 systemd-sysv arm64 237-3ubuntu10.13 [12.0 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libcom-err2 arm64 1.44.1-1ubuntu1.1 [8684 B] Get:52 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libss2 arm64 1.44.1-1ubuntu1.1 [9992 B] Get:53 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libbinutils arm64 2.30-21ubuntu1~18.04 [429 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 binutils-common arm64 2.30-21ubuntu1~18.04 [193 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 binutils arm64 2.30-21ubuntu1~18.04 [3368 B] Get:56 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 binutils-aarch64-linux-gnu arm64 2.30-21ubuntu1~18.04 [2183 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-security/main arm64 tzdata all 2018i-0ubuntu0.18.04 [189 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libpng16-16 arm64 1.6.34-1ubuntu0.18.04.1 [162 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 cpp arm64 4:7.3.0-3ubuntu2.1 [27.6 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 dpkg-dev all 1.19.0.5ubuntu2.1 [608 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libdpkg-perl all 1.19.0.5ubuntu2.1 [211 kB] Get:62 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 e2fslibs arm64 1.44.1-1ubuntu1.1 [2712 B] Get:63 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 gcc arm64 4:7.3.0-3ubuntu2.1 [5200 B] Get:64 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 g++ arm64 4:7.3.0-3ubuntu2.1 [1560 B] Get:65 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gpg arm64 2.2.4-1ubuntu1.2 [400 kB] Get:66 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libstdc++-7-dev arm64 7.4.0-3ubuntu2~18.04~ppa1 [1467 kB] Get:67 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gpgconf arm64 2.2.4-1ubuntu1.2 [106 kB] Get:68 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gpg-agent arm64 2.2.4-1ubuntu1.2 [190 kB] Get:69 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libcomerr2 arm64 1.44.1-1ubuntu1.1 [2712 B] Get:70 http://ftpmaster.internal/ubuntu bionic-security/main arm64 linux-libc-dev arm64 4.15.0-45.48 [978 kB] Get:71 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 libgcc-7-dev arm64 7.4.0-3ubuntu2~18.04~ppa1 [835 kB] Get:72 http://ftpmaster.internal/ubuntu bionic-security/main arm64 pkgbinarymangler all 138.18.04.0 [52.8 kB] Get:73 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 cpp-7 arm64 7.4.0-3ubuntu2~18.04~ppa1 [7024 kB] Get:74 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main arm64 gcc-7-base arm64 7.4.0-3ubuntu2~18.04~ppa1 [18.8 kB] Get:75 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main arm64 libssl1.1 arm64 1.1.1-1ubuntu2.1~18.04.0 [1056 kB] Get:76 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main arm64 openssl arm64 1.1.1-1ubuntu2.1~18.04.0 [584 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.8 MB in 1s (37.5 MB/s) (Reading 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Preparing to unpack .../base-files_10.1ubuntu2.4_arm64.deb ... Unpacking base-files (10.1ubuntu2.4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu2.4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu3.3_arm64.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu3.3) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu3.3) ... (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../tar_1.29b-2ubuntu0.1_arm64.deb ... Unpacking tar (1.29b-2ubuntu0.1) over (1.29b-2) ... Setting up tar (1.29b-2ubuntu0.1) ... (Reading database ... 12592 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16135936 arm64 bionic -c chroot:build-PACKAGEBUILD-16135936 --arch=arm64 --dist=bionic --nolog kmc_2.3+dfsg-5.dsc Initiating build PACKAGEBUILD-16135936 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-070.buildd +==============================================================================+ | kmc 2.3+dfsg-5 (arm64) 23 Feb 2019 14:10 | +==============================================================================+ Package: kmc Version: 2.3+dfsg-5 Source Version: 2.3+dfsg-5 Distribution: bionic Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/kmc-8bIn3E/kmc-2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kmc-8bIn3E' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16135936/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kmc_2.3+dfsg-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-IUBQ2R/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-IUBQ2R/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IUBQ2R/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-IUBQ2R/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IUBQ2R/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-IUBQ2R/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (83.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-IUBQ2R/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12604 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs Filtered Build-Depends: debhelper (>= 9), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs dpkg-deb: building package 'sbuild-build-depends-kmc-dummy' in '/<>/resolver-ofS9K1/apt_archive/sbuild-build-depends-kmc-dummy.deb'. Ign:1 copy:/<>/resolver-ofS9K1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ofS9K1/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ofS9K1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ofS9K1/apt_archive ./ Sources [248 B] Get:5 copy:/<>/resolver-ofS9K1/apt_archive ./ Packages [565 B] Fetched 2932 B in 0s (63.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install kmc build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration sbuild-build-depends-kmc-dummy zlib1g-dev 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After this operation, 78.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ofS9K1/apt_archive ./ sbuild-build-depends-kmc-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main arm64 liblocale-gettext-perl arm64 1.07-3build2 [16.3 kB] Get:3 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main arm64 libruby2.5 arm64 2.5.1-1ubuntu1.2 [2814 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main arm64 libbsd0 arm64 0.8.7-1 [36.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main arm64 bsdmainutils arm64 11.1.2ubuntu1 [175 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 man-db arm64 2.8.3-2ubuntu0.1 [993 kB] Get:9 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main arm64 ruby2.5 arm64 2.5.1-1ubuntu1.2 [48.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libmagic-mgc arm64 1:5.32-2ubuntu0.1 [184 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libmagic1 arm64 1:5.32-2ubuntu0.1 [61.9 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-security/main arm64 file arm64 1:5.32-2ubuntu0.1 [21.8 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 libglib2.0-0 arm64 2.56.3-0ubuntu0.18.04.1 [982 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main arm64 libicu60 arm64 60.2-3ubuntu3 [7985 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libxml2 arm64 2.9.4+dfsg1-6.1ubuntu1.2 [548 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main arm64 libyaml-0-2 arm64 0.1.7-2ubuntu3 [40.0 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gettext-base arm64 0.19.8.1-6ubuntu0.1 [46.7 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main arm64 rubygems-integration all 1.11 [4994 B] Get:19 http://ftpmaster.internal/ubuntu bionic/main arm64 rake all 12.3.1-1 [45.1 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby-did-you-mean all 1.2.0-2 [9700 B] Get:21 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby-minitest all 5.10.3-1 [38.6 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby-power-assert all 0.3.0-1 [7952 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby-test-unit all 3.2.5-1 [61.1 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main arm64 ruby arm64 1:2.5.1 [5712 B] Get:26 http://ftpmaster.internal/ubuntu bionic/universe arm64 asciidoctor all 1.5.5-1 [168 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main arm64 libsigsegv2 arm64 2.12-1 [14.1 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main arm64 autoconf all 2.69-11 [322 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main arm64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-security/main arm64 autopoint all 0.19.8.1-6ubuntu0.1 [412 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/universe arm64 d-shlibs all 0.82 [9880 B] Get:34 http://ftpmaster.internal/ubuntu bionic/main arm64 libtool all 2.4.6-2 [194 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main arm64 dh-autoreconf all 17 [15.8 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-security/main arm64 libarchive-zip-perl all 1.60-1ubuntu0.1 [84.6 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main arm64 libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main arm64 dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:40 http://ftpmaster.internal/ubuntu bionic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-security/main arm64 gettext arm64 0.19.8.1-6ubuntu0.1 [824 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main arm64 po-debconf all 1.0.20 [232 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-updates/main arm64 debhelper all 11.1.6ubuntu2 [902 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/universe arm64 help2man arm64 1.47.6 [162 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main arm64 libbz2-dev arm64 1.0.6-8.1 [27.5 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main arm64 dh-exec arm64 0.23build1 [23.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.8 MB in 2s (12.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12604 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.8.7-1_arm64.deb ... Unpacking libbsd0:arm64 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu1_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.3-2ubuntu0.1_arm64.deb ... Unpacking man-db (2.8.3-2ubuntu0.1) ... 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Unpacking sbuild-build-depends-kmc-dummy (0.invalid.0) ... Setting up libicu60:arm64 (60.2-3ubuntu3) ... Setting up libbz2-dev:arm64 (1.0.6-8.1) ... Setting up libarchive-zip-perl (1.60-1ubuntu0.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.56.3-0ubuntu0.18.04.1) ... No schema files found: doing nothing. Setting up d-shlibs (0.82) ... Setting up gettext-base (0.19.8.1-6ubuntu0.1) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:arm64 (0.8.7-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-6.1ubuntu1.2) ... Setting up libmagic-mgc (1:5.32-2ubuntu0.1) ... Setting up libmagic1:arm64 (1:5.32-2ubuntu0.1) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up ruby-did-you-mean (1.2.0-2) ... Setting up libyaml-0-2:arm64 (0.1.7-2ubuntu3) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.10.3-1) ... Setting up autopoint (0.19.8.1-6ubuntu0.1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up gettext (0.19.8.1-6ubuntu0.1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2ubuntu0.1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.3-2ubuntu0.1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up rake (12.3.1-1) ... Setting up dh-autoreconf (17) ... Setting up ruby-test-unit (3.2.5-1) ... Setting up debhelper (11.1.6ubuntu2) ... Setting up libruby2.5:arm64 (2.5.1-1ubuntu1.2) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up dh-exec (0.23build1) ... Setting up ruby2.5 (2.5.1-1ubuntu1.2) ... Setting up ruby (1:2.5.1) ... Setting up asciidoctor (1.5.5-1) ... Setting up sbuild-build-depends-kmc-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-142-generic arm64 (aarch64) Toolchain package versions: binutils_2.30-21ubuntu1~18.04 dpkg-dev_1.19.0.5ubuntu2.1 g++-7_7.4.0-3ubuntu2~18.04~ppa1 gcc-7_7.4.0-3ubuntu2~18.04~ppa1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.4.0-3ubuntu2~18.04~ppa1 libstdc++6_8.2.0-14ubuntu1~18.04~ppa1 linux-libc-dev_4.15.0-45.48 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.8 asciidoctor_1.5.5-1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6ubuntu0.1 autotools-dev_20180224.1 base-files_10.1ubuntu2.4 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-21ubuntu1~18.04 binutils-aarch64-linux-gnu_2.30-21ubuntu1~18.04 binutils-common_2.30-21ubuntu1~18.04 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3.3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2.1 cpp-7_7.4.0-3ubuntu2~18.04~ppa1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu2 debianutils_4.8.4 dh-autoreconf_17 dh-exec_0.23build1 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2.1 dpkg-dev_1.19.0.5ubuntu2.1 e2fslibs_1.44.1-1ubuntu1.1 e2fsprogs_1.44.1-1ubuntu1.1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3.3 file_1:5.32-2ubuntu0.1 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2.1 g++-7_7.4.0-3ubuntu2~18.04~ppa1 gcc_4:7.3.0-3ubuntu2.1 gcc-7_7.4.0-3ubuntu2~18.04~ppa1 gcc-7-base_7.4.0-3ubuntu2~18.04~ppa1 gcc-8-base_8.2.0-14ubuntu1~18.04~ppa1 gettext_0.19.8.1-6ubuntu0.1 gettext-base_0.19.8.1-6ubuntu0.1 gpg_2.2.4-1ubuntu1.2 gpg-agent_2.2.4-1ubuntu1.2 gpgconf_2.2.4-1ubuntu1.2 gpgv_2.2.4-1ubuntu1.2 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5.1 libapt-pkg5.0_1.6.8 libarchive-zip-perl_1.60-1ubuntu0.1 libargon2-0_0~20161029-1.1 libasan4_7.4.0-3ubuntu2~18.04~ppa1 libassuan0_2.5.1-2 libatomic1_8.2.0-14ubuntu1~18.04~ppa1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-21ubuntu1~18.04 libblkid1_2.31.1-0.4ubuntu3.3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14ubuntu1~18.04~ppa1 libcom-err2_1.44.1-1ubuntu1.1 libcomerr2_1.44.1-1ubuntu1.1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1.1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2.1 libext2fs2_1.44.1-1ubuntu1.1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.4.0-3ubuntu2~18.04~ppa1 libgcc1_1:8.2.0-14ubuntu1~18.04~ppa1 libgcrypt20_1.8.1-4ubuntu1.1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.3-0ubuntu0.18.04.1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.2.0-14ubuntu1~18.04~ppa1 libgpg-error0_1.27-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.2.0-14ubuntu1~18.04~ppa1 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3.2 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-14ubuntu1~18.04~ppa1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2ubuntu0.1 libmagic1_1:5.32-2ubuntu0.1 libmount1_2.31.1-0.4ubuntu3.3 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1.18.04 libncursesw5_6.1-1ubuntu1.18.04 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6ubuntu0.3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1ubuntu0.18.04.1 libprocps6_2:3.3.12-3ubuntu1.1 libreadline7_7.0-3 libruby2.5_2.5.1-1ubuntu1.2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3.3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1ubuntu1.1 libssl1.1_1.1.1-1ubuntu2.1~18.04.0 libstdc++-7-dev_7.4.0-3ubuntu2~18.04~ppa1 libstdc++6_8.2.0-14ubuntu1~18.04~ppa1 libsystemd0_237-3ubuntu10.13 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1.18.04 libtool_2.4.6-2 libtsan0_8.2.0-14ubuntu1~18.04~ppa1 libubsan0_7.4.0-3ubuntu2~18.04~ppa1 libudev1_237-3ubuntu10.13 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3.3 libxml2_2.9.4+dfsg1-6.1ubuntu1.2 libyaml-0-2_0.1.7-2ubuntu3 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-45.48 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2ubuntu0.1 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3.3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1.18.04 ncurses-bin_6.1-1ubuntu1.18.04 openssl_1.1.1-1ubuntu2.1~18.04.0 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6ubuntu0.3 perl-base_5.26.1-6ubuntu0.3 perl-modules-5.26_5.26.1-6ubuntu0.3 pinentry-curses_1.1.0-1 pkgbinarymangler_138.18.04.0 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1.1 rake_12.3.1-1 readline-common_7.0-3 ruby_1:2.5.1 ruby-did-you-mean_1.2.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby2.5_2.5.1-1ubuntu1.2 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kmc-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10.13 systemd-sysv_237-3ubuntu10.13 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2ubuntu0.1 tzdata_2018i-0ubuntu0.18.04 ubuntu-keyring_2018.09.18.1~18.04.0 util-linux_2.31.1-0.4ubuntu3.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Apr 24 12:13:03 2016 UTC gpgv: using RSA key E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmc_2.3+dfsg-5.dsc dpkg-source: info: extracting kmc in kmc-2.3+dfsg dpkg-source: info: unpacking kmc_2.3+dfsg.orig.tar.gz dpkg-source: info: unpacking kmc_2.3+dfsg-5.debian.tar.xz dpkg-source: info: applying disable-asmlib dpkg-source: info: applying use-shared-libs dpkg-source: info: applying hardening dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying 0007-Use-standard-compiler-environment-variables.patch dpkg-source: info: applying spelling dpkg-source: info: applying newish_gcc_build_fix.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16135936 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16135936 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16135936 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 2.3+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build kmc-2.3+dfsg dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kmc-2.3+dfsg' rm -rf /<>/kmc-2.3+dfsg/debian/man_src/*.html /<>/kmc-2.3+dfsg/debian/man_src/*.? rm -rf /<>/kmc-2.3+dfsg/debian/man dh_auto_clean -- make -j4 -O clean make[2]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule make[2]: Leaving directory '/<>/kmc-2.3+dfsg' make[2]: Entering directory '/<>/kmc-2.3+dfsg' rm kmer_counter/*.o rm: cannot remove 'kmer_counter/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_api/*.o rm: cannot remove 'kmc_api/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_dump/*.o rm: cannot remove 'kmc_dump/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm kmc_tools/*.o rm: cannot remove 'kmc_tools/*.o': No such file or directory makefile:80: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) rm -rf bin rm -f libkmc.a make[2]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_clean -O--parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch --parallel dh_update_autotools_config -a -O--parallel dh_auto_configure -a -O--parallel dh_auto_build -a -O--parallel make -j4 -O make[1]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/rev_byte.cpp -o kmer_counter/rev_byte.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mem_disk_file.cpp -o kmer_counter/mem_disk_file.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/timer.cpp -o kmer_counter/timer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/radix.cpp -o kmer_counter/radix.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/prob_qual.cpp -o kmer_counter/prob_qual.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/mmer.cpp -o kmc_api/mmer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)’: kmc_api/kmc_file.cpp:1360:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (index_start >= total_kmers) ~~~~~~~~~~~~^~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘void CKMCFile::Reload_sufix_file_buf()’: kmc_api/kmc_file.cpp:607:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::RestartListing()’: kmc_api/kmc_file.cpp:653:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p bin g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_api/mmer.o kmc_dump/kmc_dump.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p bin g++ -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o kmer_counter/kmer_counter.cpp: In function ‘int main(int, char**)’: kmer_counter/kmer_counter.cpp:473:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ kmer_counter/kmer_counter.cpp:475:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ cout << " Total no. of super-k-mers : " << setw(12) << n_total_super_kmers << "\n"; ^~~~ In file included from kmer_counter/kmc.h:16:0, from kmer_counter/kmer_counter.cpp:18: kmer_counter/kmer.h: In static member function ‘static void CKmerBinSorter_Impl, SIZE>::Expand(CKmerBinSorter, SIZE>&, uint64) [with unsigned int SIZE = 1]’: kmer_counter/kmer.h:909:7: warning: ‘current_kmer’ may be used uninitialized in this function [-Wmaybe-uninitialized] data &= x.data; ~~~~~^~~~~~~~~ In file included from kmer_counter/kmc.h:29:0, from kmer_counter/kmer_counter.cpp:18: kmer_counter/kb_sorter.h:684:19: note: ‘current_kmer’ was declared here CKmerQuake current_kmer; ^~~~~~~~~~~~ make[1]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p bin g++ -o bin/kmc kmer_counter/kmer_counter.o kmer_counter/mmer.o kmer_counter/mem_disk_file.o kmer_counter/rev_byte.o kmer_counter/bkb_writer.o kmer_counter/bkb_reader.o kmer_counter/fastq_reader.o kmer_counter/timer.o kmer_counter/radix.o kmer_counter/kb_completer.o kmer_counter/kb_storer.o kmer_counter/kmer.o kmer_counter/prob_qual.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_auto_test -a -O--parallel fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install -a -O--parallel install -d debian/kmc debian/libkmc-dev debian/rules override_dh_install make[1]: Entering directory '/<>/kmc-2.3+dfsg' dh_install install -d debian/kmc//bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc//bin/ install -d debian/.debhelper/generated/kmc install -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h ./kmc_api/stdafx.h debian/libkmc-dev/usr/include/kmc/ install -d debian/libkmc-dev/usr/lib/aarch64-linux-gnu cp --reflink=auto -a ./libkmc.a debian/libkmc-dev/usr/lib/aarch64-linux-gnu/ install -d debian/.debhelper/generated/libkmc-dev make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_installdocs -a -O--parallel install -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs -a -O--parallel install -p -m0644 debian/changelog debian/kmc/usr/share/doc/kmc/changelog.Debian install -p -m0644 debian/changelog debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian debian/rules override_dh_installman make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p /<>/kmc-2.3+dfsg/debian/man /<>/kmc-2.3+dfsg/debian/usage_to_man Can't exec "1": No such file or directory at /<>/kmc-2.3+dfsg/debian/usage_to_man line 19. Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /<>/kmc-2.3+dfsg/debian/man_src/*.adoc cp /<>/kmc-2.3+dfsg/debian/man_src/*.? /<>/kmc-2.3+dfsg/debian/man dh_installman -- install -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-sort.1 > debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 > debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 > debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-dump.1 > debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_dump.1 > debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc.1 > debian/kmc/usr/share/man/man1/kmc.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-compact.1 > debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools.1 > debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-filter.1 > debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-complex.1 > debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-union.1 > debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel Using 1461499714 as canonical time Normalizing debian/libkmc-dev/usr/lib/aarch64-linux-gnu/libkmc.a using File::StripNondeterminism::handlers::ar dh_compress -a -O--parallel cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian cd '/<>/kmc-2.3+dfsg' gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/<>/kmc-2.3+dfsg' dh_fixperms -a -O--parallel find debian/kmc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libkmc-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--parallel dh_strip -a -O--parallel strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libkmc-dev/usr/lib/aarch64-linux-gnu/libkmc.a rm -fr debian/.debhelper/libkmc-dev/dbgsym-root install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3e/36e800473edd78ec3bd82c60c66cb046aa2caf.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3e/36e800473edd78ec3bd82c60c66cb046aa2caf.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3e/36e800473edd78ec3bd82c60c66cb046aa2caf.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3e/36e800473edd78ec3bd82c60c66cb046aa2caf.debug debian/kmc/bin/kmc_tools install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/73739eb8a2893d92e436328bd3bc224137a8ce.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/73739eb8a2893d92e436328bd3bc224137a8ce.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/73739eb8a2893d92e436328bd3bc224137a8ce.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/73739eb8a2893d92e436328bd3bc224137a8ce.debug debian/kmc/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/f2/b211078bce795420493ba406952c4dd1e79cf5.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/f2/b211078bce795420493ba406952c4dd1e79cf5.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/f2/b211078bce795420493ba406952c4dd1e79cf5.debug strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/f2/b211078bce795420493ba406952c4dd1e79cf5.debug debian/kmc/bin/kmc_dump rm -fr debian/.debhelper/kmc/dbgsym-root dh_makeshlibs -a -O--parallel rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a -O--parallel install -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/bin/kmc_tools debian/kmc/bin/kmc debian/kmc/bin/kmc_dump dh_installdeb -a -O--parallel install -d debian/libkmc-dev/DEBIAN dh_gencontrol -a -O--parallel echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc -UMulti-Arch echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev -UMulti-Arch dpkg-gencontrol: warning: Depends field of package libkmc-dev: unknown substitution variable ${shlibs:Depends} chmod 0644 -- debian/libkmc-dev/DEBIAN/control chown 0:0 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/kmc/DEBIAN/control chown 0:0 -- debian/kmc/DEBIAN/control dh_md5sums -a -O--parallel (cd debian/kmc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libkmc-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/kmc/DEBIAN/md5sums chown 0:0 -- debian/kmc/DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chown 0:0 -- debian/libkmc-dev/DEBIAN/md5sums dh_builddeb -a -O--parallel dpkg-deb --build debian/kmc .. dpkg-deb --build debian/libkmc-dev .. INFO: pkgstriptranslations version 138.18.04.0 INFO: pkgstriptranslations version 138.18.04.0 pkgstriptranslations: processing kmc (in debian/kmc); do_strip: , oemstrip: pkgstriptranslations: processing libkmc-dev (in debian/libkmc-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libkmc-dev/DEBIAN/control, package libkmc-dev, directory debian/libkmc-dev pkgstripfiles: processing control file: debian/kmc/DEBIAN/control, package kmc, directory debian/kmc INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package kmc ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kmc' in '../kmc_2.3+dfsg-5_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libkmc-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_2.3+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kmc_2.3+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build kmc-2.3+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190223-1416 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-5_arm64.changes: ----------------------------- Format: 1.8 Date: Sun, 24 Apr 2016 12:08:34 +0000 Source: kmc Binary: kmc libkmc-dev Architecture: arm64 Version: 2.3+dfsg-5 Distribution: bionic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: kmc - count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Closes: 822390 Changes: kmc (2.3+dfsg-5) unstable; urgency=medium . * Add missing include to header, fixes FTBFS. Closes: #822390 Checksums-Sha1: b3e0e894631efa4dd04295d7b8b3a95e39b3d57a 6461 kmc_2.3+dfsg-5_arm64.buildinfo 6a1bc4e838c325b8a3f19a638ba9388b08c0e584 468380 kmc_2.3+dfsg-5_arm64.deb 3cf9bdf611af40a444fc8b570fb63812c2fa1bca 27036 libkmc-dev_2.3+dfsg-5_arm64.deb Checksums-Sha256: e40cc3f1ad0ecc35fe1bde4ab293dd95653264c0cb002dc312b7d53128e17032 6461 kmc_2.3+dfsg-5_arm64.buildinfo 9ccadcb9d02fde02aacc34132a1ecfe24a7999d5b5a746555eb54aa3d7804771 468380 kmc_2.3+dfsg-5_arm64.deb 8c8bd67a88f9f050b8150dc71dd5646f96a47f4db9122e0d30ce428606a6c6ab 27036 libkmc-dev_2.3+dfsg-5_arm64.deb Files: 63c06a64f18c94008dbffbac91518528 6461 science optional kmc_2.3+dfsg-5_arm64.buildinfo e914523088c8bdd772ac55dfc1d1ea5a 468380 science optional kmc_2.3+dfsg-5_arm64.deb 61a157bbe34ad007f6fdae3c8080aebd 27036 libdevel optional libkmc-dev_2.3+dfsg-5_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-5_arm64.deb ------------------------ new debian package, version 2.0. size 468380 bytes: control archive=1736 bytes. 1688 bytes, 32 lines control 1240 bytes, 18 lines md5sums Package: kmc Version: 2.3+dfsg-5 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2039 Depends: libbz2-1.0, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 6), zlib1g (>= 1:1.2.6) Section: science Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: count kmers in genomic sequences The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . Building de Bruijn graphs is a commonly used approach for genome assembly with data from second-generation sequencing. Unfortunately, sequencing errors (frequent in practice) result in huge memory requirements for de Bruijn graphs, as well as long build time. One of the popular approaches to handle this problem is filtering the input reads in such a way that unique k-mers (very likely obtained as a result of an error) are discarded. . Thus, KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows one to use KMC even on rather typical personal computers. When run on high-end servers (what is necessary for KMC competitors) it outperforms them in both memory requirements and speed of computation. The disk space necessary for computation is in order of the size of input data (usually it is smaller). drwxr-xr-x root/root 0 2016-04-24 12:08 ./ drwxr-xr-x root/root 0 2016-04-24 12:08 ./bin/ -rwxr-xr-x root/root 1228472 2016-04-24 12:08 ./bin/kmc -rwxr-xr-x root/root 47432 2016-04-24 12:08 ./bin/kmc_dump -rwxr-xr-x root/root 781736 2016-04-24 12:08 ./bin/kmc_tools drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/doc/kmc/ -rw-r--r-- root/root 825 2016-04-24 12:08 ./usr/share/doc/kmc/changelog.Debian.gz -rw-r--r-- root/root 1210 2015-12-22 22:42 ./usr/share/doc/kmc/copyright drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/man/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/man/man1/ -rw-r--r-- root/root 1132 2016-04-24 12:08 ./usr/share/man/man1/kmc.1.gz -rw-r--r-- root/root 613 2016-04-24 12:08 ./usr/share/man/man1/kmc_dump.1.gz -rw-r--r-- root/root 815 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-compact.1.gz -rw-r--r-- root/root 1294 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-complex.1.gz -rw-r--r-- root/root 992 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-counters_subtract.1.gz -rw-r--r-- root/root 839 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-dump.1.gz -rw-r--r-- root/root 1006 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-filter.1.gz -rw-r--r-- root/root 805 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-histogram.1.gz -rw-r--r-- root/root 951 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-intersect.1.gz -rw-r--r-- root/root 952 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-kmers_subtract.1.gz -rw-r--r-- root/root 862 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-sort.1.gz -rw-r--r-- root/root 931 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools-union.1.gz -rw-r--r-- root/root 1181 2016-04-24 12:08 ./usr/share/man/man1/kmc_tools.1.gz libkmc-dev_2.3+dfsg-5_arm64.deb ------------------------------- new debian package, version 2.0. size 27036 bytes: control archive=984 bytes. 694 bytes, 18 lines control 517 bytes, 8 lines md5sums Package: libkmc-dev Source: kmc Version: 2.3+dfsg-5 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 103 Section: libdevel Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: library to access KMC k-mer count files The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . This package contains the C++ library headers for accessing kmc's output file format. drwxr-xr-x root/root 0 2016-04-24 12:08 ./ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/include/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/include/kmc/ -rw-r--r-- root/root 5781 2015-09-10 15:25 ./usr/include/kmc/kmc_file.h -rw-r--r-- root/root 18341 2015-09-10 15:25 ./usr/include/kmc/kmer_api.h -rw-r--r-- root/root 1022 2015-09-10 15:25 ./usr/include/kmc/kmer_defs.h -rw-r--r-- root/root 4163 2015-09-10 15:25 ./usr/include/kmc/mmer.h -rw-r--r-- root/root 85 2015-09-10 15:25 ./usr/include/kmc/stdafx.h drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/lib/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 59506 2016-04-24 12:08 ./usr/lib/aarch64-linux-gnu/libkmc.a drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-04-24 12:08 ./usr/share/doc/libkmc-dev/ -rw-r--r-- root/root 825 2016-04-24 12:08 ./usr/share/doc/libkmc-dev/changelog.Debian.gz -rw-r--r-- root/root 1210 2015-12-22 22:42 ./usr/share/doc/libkmc-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 95792 Build-Time: 296 Distribution: bionic Host Architecture: arm64 Install-Time: 27 Job: kmc_2.3+dfsg-5.dsc Machine Architecture: arm64 Package: kmc Package-Time: 325 Source-Version: 2.3+dfsg-5 Space: 95792 Status: successful Version: 2.3+dfsg-5 -------------------------------------------------------------------------------- Finished at 20190223-1416 Build needed 00:05:25, 95792k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=arm64 PACKAGEBUILD-16135936 Scanning for processes to kill in build PACKAGEBUILD-16135936