Author: Andreas Tille
Revision Date: 2015-09-01 17:40:57 UTC

* Moved to Git

* start of automatic changelog entry *

* Changes in metapackage dependencies
 -med-tools
  removed:
    Depends: python3-fitbitscraper
 -med-bio
  added:
    Depends: sortmerna, r-bioc-limma, r-cran-metamix, iqtree,
              relion-bin+gui | relion-bin+mpi+gui, berkeley-express,
              daligner, mhap, sumatra, hyphy-mpi | hyphy-pt,
              python-pbalign, bio-rainbow, python-kineticstools,
              ea-utils, suitename, wgsim, r-bioc-annotate, r-bioc-edger,
              adun-core, r-bioc-genefilter, hyphygui, sumtrees, blasr,
              repeatmasker-recon, pbdagcon, relion-bin | relion-bin+mpi,
              axe-demultiplexer, tantan
    Suggests: adun.app
  removed:
    Depends: relion-bin | relion-bin-mpi, express, relion-gui, hyphy,
              adun.app
 -med-imaging-dev
  added:
    Depends: libvtk-dicom-java, libmaxflow-dev, libvtk-dicom0.5-dev
    Suggests: liblimereg-dev
  removed:
    Depends: libvtk-dicom0.4-dev
    Suggests: limereg-dev
 -med-bio-dev
  added:
    Depends: libdivsufsort-dev, python3-cutadapt | python-cutadapt,
              python3-skbio | python-skbio, python3-dendropy |
              python-dendropy, python3-ruffus | python-ruffus,
              python3-hyphy | python-hyphy
  removed:
    Depends: librdp-readseq-java, librdp-alignment-java

Author: Andreas Tille
Revision Date: 2015-09-01 17:40:57 UTC

* Moved to Git

* start of automatic changelog entry *

* Changes in metapackage dependencies
 -med-tools
  removed:
    Depends: python3-fitbitscraper
 -med-bio
  added:
    Depends: sortmerna, r-bioc-limma, r-cran-metamix, iqtree,
              relion-bin+gui | relion-bin+mpi+gui, berkeley-express,
              daligner, mhap, sumatra, hyphy-mpi | hyphy-pt,
              python-pbalign, bio-rainbow, python-kineticstools,
              ea-utils, suitename, wgsim, r-bioc-annotate, r-bioc-edger,
              adun-core, r-bioc-genefilter, hyphygui, sumtrees, blasr,
              repeatmasker-recon, pbdagcon, relion-bin | relion-bin+mpi,
              axe-demultiplexer, tantan
    Suggests: adun.app
  removed:
    Depends: relion-bin | relion-bin-mpi, express, relion-gui, hyphy,
              adun.app
 -med-imaging-dev
  added:
    Depends: libvtk-dicom-java, libmaxflow-dev, libvtk-dicom0.5-dev
    Suggests: liblimereg-dev
  removed:
    Depends: libvtk-dicom0.4-dev
    Suggests: limereg-dev
 -med-bio-dev
  added:
    Depends: libdivsufsort-dev, python3-cutadapt | python-cutadapt,
              python3-skbio | python-skbio, python3-dendropy |
              python-dendropy, python3-ruffus | python-ruffus,
              python3-hyphy | python-hyphy
  removed:
    Depends: librdp-readseq-java, librdp-alignment-java

Author: Andreas Tille
Revision Date: 2015-03-29 13:47:07 UTC

* Fixed syntax of med-cloud and rerender dependencies
* Versioned Build-Depends: blends-dev (>= 0.6.92.2) to ensure no packages
  from non-free or unstable will be included by accident
* Since last metapackage creation (and before freeze) the following
  packages made it into testing:
   fastaq,
   relion-bin + librelion-dev
  These were adde to the list of Recommends
* After the freeze the package
   psychopy
  was removed from testing and thus it is removed from Recommends

Author: Andreas Tille
Revision Date: 2012-12-20 09:13:33 UTC

* Build-Depends: blends-dev (>= 0.6.16.2)
* Added dependency in imaging-dev: libopenigtlink1-dev

Author: Andreas Tille
Revision Date: 2010-11-18 08:16:45 UTC

[Steffen Möller]
* Added task cloud: Cloud computing image for Debian Med

[Andreas Tille]
* config/control: Depends: blends-common (>= 0.6.15)
* debian/control.stub: Build-Depends-Indep: blends-dev (>= 0.6.15)
  which provides postrm / preinst scripts for each metapackage to
  enable handling failed-upgrade
  Closes: ##603853

Author: Andreas Tille
Revision Date: 2009-01-06 10:01:49 UTC

* Make use of blends-dev instead of cdd-dev
* Versioned build depends from blends-dev >= 0.6.1 because this
  also supports dist experimental
* Adapted Vcs fields to new location (cdd -> blends)
* tasks/practice: Depends: aeskulap
* Added link to tasks page in long description of med-tasks
  (thanks to James Busser <jbusser@interchange.ubc.ca> for the
  hint)
* tasks/*: several updates of newly uploaded packages and
  prospective packages

Author: Andreas Tille
Revision Date: 2008-06-30 09:59:37 UTC

* tasks/bio-dev
  - Added libgenome
  - Added libmems as prospective package
  - Moved bioconductor from bio to bio-dev
  - Added prospective projects where Steffen Möller started some
    packaging work
  - libqsearch -> libqsearch-dev
* tasks/bio
  - Added prospective projects where Steffen Möller started some
    packaging work
  - Suggests: texlive-latex-extra (because of TeXShade)
  - Removed line breaks in Dependencies, because cdd-gen-control
    is not compliant to RFC 822 and requires '\' at the end of
    lines to continue parsing the tasks files. To simply circumvent
    this problem the relevant lines were concatenated to not miss
    the dependencies in the resulting control file
  - Renamed dialign-t to dialign-tx
* tasks/tools
  - Added mssstest
  - Added wgerman-medical, hunspell-de-med (remark: these are not
    really tools but we have no better section, typesetting might be
    an option but does also fit not really good)
* tasks/imaging
  - Added prospective packages from static page
* tasks/imaging-dev
  - Removed libgtkimreg
  - Added libvtk5
  - Added prospective packages from static page
  - libminc0-dev | libminc-dev -> libminc-dev
  - insighttoolkit -> insighttoolkit3
* tasks/physics
  - octave | octave2.1 -> octave3.0
* debian/control.stub: XS-DM-Upload-Allowed -> DM-Upload-Allowed
* Standards-Version: 3.8.0 (no changes needed)
* Fixed typing of Debian Med: sed -i 's/Debian-Med/Debian Med/' *