lp:ismrmrd
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Branches
Name | Last Modified | Last Commit |
---|---|---|
hansenms/ |
2024-02-14 01:06:50 UTC |
Fixed some conan issues
Author:
Michael Hansen
Fixed some conan issues |
master | 2023-11-07 12:17:10 UTC |
Fix argument name in matlab AcquisitionHeader.append() (#243)
Author:
gabuzi
Fix argument name in matlab AcquisitionHead Appending to an an acquisition header fails in matlab due to Co-authored-by: David Christoffer Hansen <dchansen@ |
hansenms/ |
2023-10-30 21:36:48 UTC |
PR comments
Author:
Michael Hansen
PR comments |
debian | 2023-03-03 13:22:17 UTC |
Merge master into debian (#233)
Author:
David Christoffer Hansen
Merge master into debian (#233) * Add fixed PatientID and generated MeasurementID to header information in generate_ * Add PatientID and random MeasurmentID to header * Whitespace fixes * Add header template option * Update generate_ * Reverting to non-template version with fixed PatientID and generated MeasurementID * Update ismrmrd_ Added boost-uuid to the windows test. * Update CMakeLists.txt Co-authored-by: David Christoffer Hansen <dchansen@ * Fixed missing flags in Matlab acquisition header (#212) * Fixed missing flags in Matlab acquisition header * Update AcquisitionHeader.m * Update AcquisitionHeader.m * Added userParameterString to trajectoryParams (#213) * Fixed missing flags in Matlab acquisition header * Added userParameterString to trajectoryParams * Fixed ACQ bug * Update CMakeLists.txt * Conda build (#214) * First working package build * Added github workflow for conda packages * Added build environment * Fixes to pipeline * Cleaned working directory * Fixed phantom generator * Fixed formatting * Using matrix strategy * Fixed YAML bug Co-authored-by: Michael Hansen <mihansen@ * Fix pipeline (#215) Co-authored-by: Michael Hansen <mihansen@ * Another pipeline fix (#216) Co-authored-by: Michael Hansen <mihansen@ * Added support for multiband slices. Added tests for the ISMRMRD header (#209) * Added support for multiband slices. Added tests for the ISMRMRD header * Added missing files * Fixed a bug regarding protocolName * Removed redundant declaration of EncodingLimits equality operator * Cachced vcpkg deps * Fixed float conversion * Added binary cache * Updated binary cache * Updated binary cache * Updated multiband and added xml tests * Update xml version * Added missing test dependency * Updated multiband * Updated testing * Updated testing * Removed unused variables * Changed names of types to explicitly define precision * Update CMakeLists.txt * Changed Multiband to be part of parallelImaging * Fixed serialization/ * Added multiband factor * Updated schema hash * Updated multiband * Removed diffusion * Update CMakeLists.txt * Fixed a bug where multiband_factor would be read incorrectly (#219) * Serialization/ * Added devcontainer * Started work on serialization * First draft of serialization and stream converters * Added stream reconstruction example * Updated environment to include boost * Added command line arguments to stream tools and support for converting image series to streams * Added some explanations to the serialization.h file * Added basic serialization tests * Adapted to virtualized interface and implemented e2e test * Small cleanups and comments * Fixed ignored return values in tests * Fixing Mac and Windows build errors * Fixed comment typo * Fixes for build errors and code review * Fixed more windows/mac build problems * Fixed more windows/mac build problems (2) * Fixed windows build issues * Rework to fix compiler warnings * Fixed bug in image deserialization, fixed EXPORT statement for Windows * Some restructuring * Removed unused variable * Fixed exe detection on Windows * Path separator for e2e tests * Path changes for windows tests * Trying a bash shell for Windows tests * Fixed slashes in pipeline * Some fixes for Windows tests * Only disabling test on Windows run * Running e3e tests on Windows * Refactoring for file in and output * stdin support in stream tools * Added static asserts for ISMRMRD datatypes * Removed unneeded formatting changes * Added C++11 checks and some more layout checks * Added checks for eof and bad on serialize and deserialize * Rename Stream to StreamView * Changed message ids to enum * Added tests that use binary file intermediates for stream based reconstruction * Checking that input stream is empty * Better check for EOF * Simplified interface for iostream wrappers * Added serialization/ * Added cast to avoid Windows build error * PR feedback * Added test to make sure we handle strings with null terminator when deserializing. * Documentation rework (#210) * Add ImageHeader flag defines for first/last images of each loop counter * Initial rework of documentation * Update index.rst * Improve formatting of tables * Update table formatting and overview * Fix broken links and other cleanup * Re-add building.md and remove duplicate filestorage.md * Update streaming protocol to remove config echoing and make numbering consistent with diagram * Remove null terminator from text sent in most MRD serialization * Add offset values to fixed headers * Remove duplicate table for WaveformHeader and correct the size * Grammar fix Co-authored-by: Michael Hansen <mihansen@ * Buffered reading and writing MRD files, resulting in 6x speedup on read and 4x on write (#223) * Buffered reading from MRD file, resulting in 6x read speed * Added check of the vcpkg version * Converted to global file buffer for datasets. Not threadsafe, but neither is HDF5 * Adds support for diffusion (#220) * Added diffusionScheme * Fixed XML and XSD formatting * Multiple boost versions (#224) * Remove PugiXML sources from ISMRMRD and configure build to use system library. (#226) * Add pugixml as a dependency to various environment configurations. * Adding PugiXML package to CMake and Windows build, and configure build to use system PugiXML. * Completely remove option to use locally-provided PugiXML, and there was no way to revert to system PugiXML when build RPMs for Fedora. Now - system-provided PugiXML is the only option. * Increment patch version to note changes. * Also need to update patch version for vcpkg for Ubuntu conda, CMake, and RPM builds. * Fixed a bug where the diffusion header was not correctly read (#225) Co-authored-by: Michael Hansen <mihansen@ * Fixed an old reference to USE_SYSTEM_PUGIXML. (#228) * always include stdint.h on Windows Visual Studio remove obsolete code that tries to guess some typedefs for ints. Fixes #217 * Fixed an old reference to USE_SYSTEM_PUGIXML. Removed a duplicate reference to multiband in the schema * Updated version * Update vcpkg.json --------- Co-authored-by: Kris Thielemans <KrisThielemans * Updating build docs to be consistent with removal of Pugixml sources from ISMRMRD (#229) * Updating build docs to explicitly state Pugixml must now be installed externally, as ISMRMRD no longer includes a copy within its source code. * Update dependency installation in documentation to match what's done in automated workflows. --------- Co-authored-by: Andrew Dupuis <andrewpdupuis@ |
hansenms/ |
2022-10-11 01:16:29 UTC |
Work on E2E tests
Author:
Michael Hansen
Work on E2E tests |
hansenms/ |
2022-10-07 21:26:49 UTC |
Added basic serialization tests
Author:
Michael Hansen
Added basic serialization tests |
hansenms/ |
2022-08-09 16:00:03 UTC |
Another fix for conda pipeline
Author:
Michael Hansen
Another fix for conda pipeline |
hansenms/ |
2022-08-08 21:29:04 UTC |
Fixed YAML bug
Author:
Michael Hansen
Fixed YAML bug |
hansenms/ |
2022-03-05 00:11:26 UTC |
Renamed some files that are in fact not tests
Author:
Michael Hansen
Renamed some files that are in fact not tests |
hansenms/ |
2022-03-04 19:32:16 UTC |
Reordered documentation TOC
Author:
Michael Hansen
Reordered documentation TOC |
hansenms/ |
2021-02-18 15:05:18 UTC |
Added STATUS back on FFTW3 find
Author:
Michael Hansen
Added STATUS back on FFTW3 find |
hansenms/docs-reorg | 2021-02-16 21:19:33 UTC |
Fixed case for PugiXML_Found
Author:
Michael Hansen
Fixed case for PugiXML_Found |
hansenms-patch-1 | 2021-02-14 02:48:01 UTC |
Added github actions build status
Author:
Michael Hansen
Added github actions build status |
add_get_ |
2019-01-08 15:22:58 UTC |
add a member function to return all keys in a meta container
Author:
Hui Xue
add a member function to return all keys in a meta container |
2.x | 2016-08-08 16:56:13 UTC |
Merge pull request #69 from vadre/icp2
Author:
Michael Hansen
Merge pull request #69 from vadre/icp2 Icp2 |
alexandra | 2016-08-08 16:56:13 UTC |
Merge pull request #69 from vadre/icp2
Author:
Michael Hansen
Merge pull request #69 from vadre/icp2 Icp2 |
bug_fix_serialize | 2016-06-03 21:48:30 UTC |
fix a bug in serializing ismrmrd header
Author:
Hui Xue
fix a bug in serializing ismrmrd header |
add_sequence_type | 2015-05-09 13:39:51 UTC |
update matlab functions
Author:
Hui Xue
update matlab functions |
add_more_xsl_para | 2015-05-09 13:39:51 UTC |
update matlab functions
Author:
Hui Xue
update matlab functions |
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